Wall clock time and date at job start Tue Mar 31 2020 15:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47163 * 2 1 4 4 C 1.53004 * 109.47362 * 171.69867 * 3 2 1 5 5 C 1.52991 * 109.47576 * 184.80687 * 4 3 2 6 6 C 1.53001 * 109.47566 * 291.69915 * 3 2 1 7 7 N 1.46504 * 109.47022 * 294.95142 * 6 3 2 8 8 C 1.46494 * 119.99926 * 277.55684 * 7 6 3 9 9 C 1.50692 * 109.47465 * 271.72774 * 8 7 6 10 10 H 1.08001 * 119.99822 * 0.02562 * 9 8 7 11 11 C 1.37882 * 120.00129 * 180.02562 * 9 8 7 12 12 N 1.31511 * 119.99988 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99865 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47604 * 59.99738 * 13 11 9 15 15 H 1.48502 * 109.46996 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.46874 * 299.99740 * 13 11 9 17 17 S 1.65603 * 119.99984 * 97.55962 * 7 6 3 18 18 O 1.42102 * 104.27747 * 340.78844 * 17 7 6 19 19 O 1.42095 * 104.27823 * 212.93235 * 17 7 6 20 20 C 1.81399 * 104.44994 * 96.85965 * 17 7 6 21 21 C 1.52994 * 109.47182 * 179.97438 * 20 17 7 22 22 C 1.47196 * 115.54973 * 325.67284 * 21 20 17 23 23 N 6.18372 * 88.74848 * 248.32946 * 2 1 3 24 24 C 1.52998 * 117.49944 * 180.02562 * 21 20 17 25 25 C 1.53001 * 60.03432 * 252.49920 * 24 21 20 26 26 H 1.09001 * 109.47167 * 60.33726 * 1 2 3 27 27 H 1.09001 * 109.47522 * 180.34146 * 1 2 3 28 28 H 1.09002 * 109.47274 * 300.33778 * 1 2 3 29 29 H 1.09001 * 109.46685 * 240.00298 * 2 1 3 30 30 H 1.08997 * 109.46916 * 120.00614 * 2 1 3 31 31 H 1.09001 * 109.47517 * 51.70206 * 3 2 1 32 32 H 1.08997 * 109.46765 * 304.81249 * 4 3 2 33 33 H 1.09004 * 109.46814 * 64.80345 * 4 3 2 34 34 H 1.08998 * 109.47403 * 300.00622 * 5 4 3 35 35 H 1.09004 * 109.47328 * 59.99973 * 5 4 3 36 36 H 1.08997 * 109.47696 * 180.02562 * 5 4 3 37 37 H 1.08993 * 109.47289 * 174.95083 * 6 3 2 38 38 H 1.09001 * 109.46821 * 54.95022 * 6 3 2 39 39 H 1.09000 * 109.47039 * 31.73347 * 8 7 6 40 40 H 1.09000 * 109.46866 * 151.72558 * 8 7 6 41 41 H 0.97000 * 120.00092 * 180.02562 * 12 11 9 42 42 H 1.09000 * 109.46922 * 59.99895 * 20 17 7 43 43 H 1.09001 * 109.47222 * 300.00392 * 20 17 7 44 44 H 1.09002 * 117.49954 * 0.02562 * 24 21 20 45 45 H 1.09004 * 117.49959 * 144.99350 * 24 21 20 46 46 H 1.08996 * 117.50043 * 107.50028 * 25 24 21 47 47 H 1.09000 * 117.49673 * 252.52672 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5558 1.4475 0.2083 5 6 4.0493 2.8907 0.3281 6 6 1.7072 2.1011 -1.3403 7 7 2.4472 1.4295 -2.4115 8 6 3.8411 1.7929 -2.6782 9 6 3.8834 2.9365 -3.6586 10 1 2.9639 3.3514 -4.0443 11 6 5.0960 3.4530 -4.0634 12 7 6.2157 2.9474 -3.5942 13 14 5.1484 4.8711 -5.2783 14 1 4.4336 6.0401 -4.7059 15 1 6.5614 5.2385 -5.5496 16 1 4.4919 4.4615 -6.5457 17 16 1.7079 0.2596 -3.3211 18 8 0.5964 -0.1459 -2.5341 19 8 2.7523 -0.6503 -3.6376 20 6 1.1491 1.1305 -4.8111 21 6 0.4421 0.1444 -5.7431 22 6 0.9806 -1.2255 -5.7445 23 7 1.3949 -2.2829 -5.7453 24 6 -0.1056 0.6893 -7.0637 25 6 -1.0674 0.3113 -5.9354 26 1 -0.3633 0.5086 -0.8930 27 1 -0.3634 -1.0276 0.0061 28 1 -0.3634 0.5191 0.8869 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.5606 1.9973 0.8065 32 1 3.7989 0.9033 1.1208 33 1 4.0408 0.9670 -0.6414 34 1 3.8061 3.4348 -0.5844 35 1 3.5643 3.3712 1.1778 36 1 5.1292 2.8943 0.4760 37 1 1.9896 3.1534 -1.3080 38 1 0.6371 2.0178 -1.5302 39 1 4.3224 2.0940 -1.7477 40 1 4.3663 0.9349 -3.0978 41 1 7.0688 3.3110 -3.8787 42 1 2.0088 1.5618 -5.3237 43 1 0.4576 1.9248 -4.5298 44 1 0.0382 1.7501 -7.2687 45 1 -0.0673 0.0332 -7.9333 46 1 -1.5567 1.1236 -5.3979 47 1 -1.6615 -0.5937 -6.0625 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000165202129.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:29 Heat of formation + Delta-G solvation = -17.520213 kcal Electronic energy + Delta-G solvation = -28477.075634 eV Core-core repulsion = 24788.499559 eV Total energy + Delta-G solvation = -3688.576075 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -38.76917 -38.14112 -36.54269 -35.66021 -35.27386 -33.92857 -32.27699 -31.59551 -29.34317 -28.15401 -26.04947 -24.59460 -23.55516 -22.77924 -22.32814 -21.30748 -19.59785 -18.30489 -17.52256 -17.00297 -16.62638 -15.77156 -15.56106 -15.21747 -14.79825 -14.62385 -14.27093 -13.98147 -13.88176 -13.40383 -13.27794 -12.96031 -12.76969 -12.70116 -12.45909 -12.22316 -12.09532 -11.95967 -11.77717 -11.74306 -11.52787 -11.33967 -11.24431 -11.18876 -11.14907 -10.92886 -10.77390 -10.53428 -10.49767 -10.30139 -10.19998 -10.08955 -9.93501 -9.81020 -9.74153 -9.58245 -8.50582 -7.96056 -6.15891 -4.23866 0.83492 2.44198 2.66162 3.20213 3.24530 3.27764 3.30917 3.59881 3.69277 4.12227 4.30637 4.45879 4.61847 4.63998 4.80335 5.17197 5.24578 5.28553 5.32306 5.35890 5.37557 5.47271 5.60300 5.77495 5.82330 5.82689 5.94129 5.96623 6.04771 6.06343 6.12273 6.26762 6.35275 6.46683 6.52022 6.63587 6.69931 6.73809 6.96002 7.00004 7.04247 7.39774 7.41441 7.49097 7.64893 7.80919 8.10491 8.80258 9.42262 10.91176 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.008994 B = 0.007201 C = 0.004633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3112.405114 B = 3887.294579 C = 6041.716031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.113 4.113 3 C -0.101 4.101 4 C -0.129 4.129 5 C -0.153 4.153 6 C 0.131 3.869 7 N -0.975 5.975 8 C 0.223 3.777 9 C -0.550 4.550 10 H 0.061 0.939 11 C 0.068 3.932 12 N -0.884 5.884 13 Si 0.889 3.111 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.276 1.276 17 S 2.597 3.403 18 O -0.957 6.957 19 O -0.949 6.949 20 C -0.600 4.600 21 C -0.038 4.038 22 C 0.197 3.803 23 N -0.378 5.378 24 C -0.134 4.134 25 C -0.140 4.140 26 H 0.081 0.919 27 H 0.043 0.957 28 H 0.035 0.965 29 H 0.054 0.946 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.047 0.953 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.040 0.960 36 H 0.049 0.951 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.047 0.953 41 H 0.266 0.734 42 H 0.155 0.845 43 H 0.142 0.858 44 H 0.119 0.881 45 H 0.107 0.893 46 H 0.119 0.881 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.577 0.901 0.613 13.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.151 4.151 3 C -0.122 4.122 4 C -0.166 4.166 5 C -0.210 4.210 6 C 0.005 3.995 7 N -0.814 5.814 8 C 0.101 3.899 9 C -0.590 4.590 10 H 0.079 0.921 11 C -0.136 4.136 12 N -0.521 5.521 13 Si 0.717 3.283 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.202 1.202 17 S 2.688 3.312 18 O -0.947 6.947 19 O -0.939 6.939 20 C -0.727 4.727 21 C -0.044 4.044 22 C -0.121 4.121 23 N -0.052 5.052 24 C -0.173 4.173 25 C -0.178 4.178 26 H 0.099 0.901 27 H 0.062 0.938 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.066 0.934 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.065 0.935 41 H 0.075 0.925 42 H 0.173 0.827 43 H 0.160 0.840 44 H 0.137 0.863 45 H 0.125 0.875 46 H 0.138 0.862 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -12.784 -1.593 0.831 12.910 hybrid contribution 0.219 1.921 -1.136 2.243 sum -12.565 0.328 -0.305 12.573 Atomic orbital electron populations 1.21776 0.95562 1.01253 1.01163 1.21536 0.96457 0.96167 1.00913 1.21603 0.96464 0.96498 0.97598 1.21793 0.95211 0.97617 1.01957 1.21854 1.00517 0.96772 1.01857 1.21238 0.94880 0.97408 0.86007 1.57330 1.23231 1.57700 1.43134 1.19696 0.74894 0.96394 0.98886 1.21564 0.92603 1.17851 1.26949 0.92123 1.24927 0.95557 0.96854 0.96272 1.69912 0.97601 1.41271 1.43347 0.86708 0.77294 0.82694 0.81635 1.20120 1.21154 1.20153 1.05420 0.74677 0.75439 0.75621 1.93583 1.55272 1.81101 1.64790 1.93606 1.55026 1.60209 1.85079 1.30477 1.11774 1.10293 1.20137 1.17571 0.97643 0.85013 1.04124 1.27824 0.94554 0.93849 0.95880 1.81212 1.06530 1.11830 1.05666 1.23242 1.00083 1.03241 0.90712 1.23376 0.88459 1.04561 1.01407 0.90079 0.93822 0.94602 0.92694 0.93213 0.91035 0.93382 0.89710 0.90624 0.94106 0.93153 0.90168 0.91034 0.91123 0.93532 0.92454 0.82711 0.84023 0.86258 0.87471 0.86248 0.87323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 8.63 37.16 0.32 -1.74 16 2 C -0.11 -1.83 4.86 -26.74 -0.13 -1.96 16 3 C -0.10 -1.56 2.19 -90.62 -0.20 -1.76 16 4 C -0.13 -2.15 4.84 -26.73 -0.13 -2.28 16 5 C -0.15 -2.50 8.64 37.15 0.32 -2.18 16 6 C 0.13 2.09 4.90 -4.04 -0.02 2.07 16 7 N -0.98 -18.43 2.15 -115.67 -0.25 -18.67 16 8 C 0.22 5.11 4.00 -5.20 -0.02 5.09 16 9 C -0.55 -13.26 9.21 -34.44 -0.32 -13.58 16 10 H 0.06 1.35 7.81 -52.49 -0.41 0.94 16 11 C 0.07 1.73 5.46 -17.82 -0.10 1.64 16 12 N -0.88 -24.13 13.29 55.43 0.74 -23.39 16 13 Si 0.89 19.59 29.54 -169.99 -5.02 14.56 16 14 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 15 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 16 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 17 S 2.60 48.31 3.69 -107.50 -0.40 47.92 16 18 O -0.96 -17.15 11.37 -57.54 -0.65 -17.80 16 19 O -0.95 -21.97 15.41 -57.54 -0.89 -22.86 16 20 C -0.60 -8.75 6.33 37.15 0.24 -8.52 16 21 C -0.04 -0.51 2.37 -157.26 -0.37 -0.88 16 22 C 0.20 3.36 12.73 -20.77 -0.26 3.09 16 23 N -0.38 -7.34 18.47 42.14 0.78 -6.57 16 24 C -0.13 -1.23 9.93 -26.73 -0.27 -1.49 16 25 C -0.14 -1.25 9.86 -26.69 -0.26 -1.52 16 26 H 0.08 1.22 4.66 -51.93 -0.24 0.98 16 27 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.05 1.03 5.35 -51.93 -0.28 0.75 16 30 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 31 H 0.07 0.96 8.13 -51.93 -0.42 0.54 16 32 H 0.05 0.74 8.13 -51.93 -0.42 0.32 16 33 H 0.08 1.67 5.13 -51.93 -0.27 1.40 16 34 H 0.07 1.37 5.54 -51.93 -0.29 1.09 16 35 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.08 1.26 6.79 -51.93 -0.35 0.91 16 38 H 0.07 0.99 5.85 -51.93 -0.30 0.69 16 39 H 0.07 1.63 3.34 -51.93 -0.17 1.46 16 40 H 0.05 1.23 6.98 -51.93 -0.36 0.87 16 41 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 42 H 0.15 2.42 7.96 -51.92 -0.41 2.01 16 43 H 0.14 1.56 7.90 -51.92 -0.41 1.15 16 44 H 0.12 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.12 0.82 8.05 -51.93 -0.42 0.40 16 47 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 374.22 15.07 5.64 5.64 Total: -1.00 -31.13 374.22 -8.53 -39.66 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -7.28 Total: 5.52 kcal Atomic # 6 Polarization: -22.81 SS G_CDS: -1.20 Total: -24.01 kcal Atomic # 7 Polarization: -49.90 SS G_CDS: 1.27 Total: -48.63 kcal Atomic # 8 Polarization: -39.11 SS G_CDS: -1.54 Total: -40.66 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.02 Total: 14.56 kcal Atomic # 16 Polarization: 48.31 SS G_CDS: -0.40 Total: 47.92 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.13 -8.53 -39.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165202129.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.139 kcal (2) G-P(sol) polarization free energy of solvation -31.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds