Wall clock time and date at job start Tue Mar 31 2020 15:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47163 * 2 1 4 4 C 1.53004 * 109.47362 * 171.69867 * 3 2 1 5 5 C 1.52991 * 109.47576 * 184.80687 * 4 3 2 6 6 C 1.53001 * 109.47566 * 291.69915 * 3 2 1 7 7 N 1.46504 * 109.47022 * 294.95142 * 6 3 2 8 8 C 1.46494 * 119.99926 * 277.55684 * 7 6 3 9 9 C 1.50692 * 109.47465 * 271.72774 * 8 7 6 10 10 H 1.08001 * 119.99822 * 0.02562 * 9 8 7 11 11 C 1.37882 * 120.00129 * 180.02562 * 9 8 7 12 12 N 1.31511 * 119.99988 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 119.99865 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47604 * 59.99738 * 13 11 9 15 15 H 1.48502 * 109.46996 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.46874 * 299.99740 * 13 11 9 17 17 S 1.65603 * 119.99984 * 97.55962 * 7 6 3 18 18 O 1.42102 * 104.27747 * 340.78844 * 17 7 6 19 19 O 1.42095 * 104.27823 * 212.93235 * 17 7 6 20 20 C 1.81399 * 104.44994 * 96.85965 * 17 7 6 21 21 C 1.52994 * 109.47182 * 179.97438 * 20 17 7 22 22 C 1.47196 * 115.54973 * 325.67284 * 21 20 17 23 23 N 6.18372 * 88.74848 * 248.32946 * 2 1 3 24 24 C 1.52998 * 117.49944 * 180.02562 * 21 20 17 25 25 C 1.53001 * 60.03432 * 252.49920 * 24 21 20 26 26 H 1.09001 * 109.47167 * 60.33726 * 1 2 3 27 27 H 1.09001 * 109.47522 * 180.34146 * 1 2 3 28 28 H 1.09002 * 109.47274 * 300.33778 * 1 2 3 29 29 H 1.09001 * 109.46685 * 240.00298 * 2 1 3 30 30 H 1.08997 * 109.46916 * 120.00614 * 2 1 3 31 31 H 1.09001 * 109.47517 * 51.70206 * 3 2 1 32 32 H 1.08997 * 109.46765 * 304.81249 * 4 3 2 33 33 H 1.09004 * 109.46814 * 64.80345 * 4 3 2 34 34 H 1.08998 * 109.47403 * 300.00622 * 5 4 3 35 35 H 1.09004 * 109.47328 * 59.99973 * 5 4 3 36 36 H 1.08997 * 109.47696 * 180.02562 * 5 4 3 37 37 H 1.08993 * 109.47289 * 174.95083 * 6 3 2 38 38 H 1.09001 * 109.46821 * 54.95022 * 6 3 2 39 39 H 1.09000 * 109.47039 * 31.73347 * 8 7 6 40 40 H 1.09000 * 109.46866 * 151.72558 * 8 7 6 41 41 H 0.97000 * 120.00092 * 180.02562 * 12 11 9 42 42 H 1.09000 * 109.46922 * 59.99895 * 20 17 7 43 43 H 1.09001 * 109.47222 * 300.00392 * 20 17 7 44 44 H 1.09002 * 117.49954 * 0.02562 * 24 21 20 45 45 H 1.09004 * 117.49959 * 144.99350 * 24 21 20 46 46 H 1.08996 * 117.50043 * 107.50028 * 25 24 21 47 47 H 1.09000 * 117.49673 * 252.52672 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5558 1.4475 0.2083 5 6 4.0493 2.8907 0.3281 6 6 1.7072 2.1011 -1.3403 7 7 2.4472 1.4295 -2.4115 8 6 3.8411 1.7929 -2.6782 9 6 3.8834 2.9365 -3.6586 10 1 2.9639 3.3514 -4.0443 11 6 5.0960 3.4530 -4.0634 12 7 6.2157 2.9474 -3.5942 13 14 5.1484 4.8711 -5.2783 14 1 4.4336 6.0401 -4.7059 15 1 6.5614 5.2385 -5.5496 16 1 4.4919 4.4615 -6.5457 17 16 1.7079 0.2596 -3.3211 18 8 0.5964 -0.1459 -2.5341 19 8 2.7523 -0.6503 -3.6376 20 6 1.1491 1.1305 -4.8111 21 6 0.4421 0.1444 -5.7431 22 6 0.9806 -1.2255 -5.7445 23 7 1.3949 -2.2829 -5.7453 24 6 -0.1056 0.6893 -7.0637 25 6 -1.0674 0.3113 -5.9354 26 1 -0.3633 0.5086 -0.8930 27 1 -0.3634 -1.0276 0.0061 28 1 -0.3634 0.5191 0.8869 29 1 1.8932 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.5606 1.9973 0.8065 32 1 3.7989 0.9033 1.1208 33 1 4.0408 0.9670 -0.6414 34 1 3.8061 3.4348 -0.5844 35 1 3.5643 3.3712 1.1778 36 1 5.1292 2.8943 0.4760 37 1 1.9896 3.1534 -1.3080 38 1 0.6371 2.0178 -1.5302 39 1 4.3224 2.0940 -1.7477 40 1 4.3663 0.9349 -3.0978 41 1 7.0688 3.3110 -3.8787 42 1 2.0088 1.5618 -5.3237 43 1 0.4576 1.9248 -4.5298 44 1 0.0382 1.7501 -7.2687 45 1 -0.0673 0.0332 -7.9333 46 1 -1.5567 1.1236 -5.3979 47 1 -1.6615 -0.5937 -6.0625 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000165202129.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:28 Heat of formation + Delta-G solvation = -36.696382 kcal Electronic energy + Delta-G solvation = -28477.907175 eV Core-core repulsion = 24788.499559 eV Total energy + Delta-G solvation = -3689.407616 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -39.76122 -39.47610 -38.06708 -36.96729 -36.75102 -35.54054 -34.01196 -32.90706 -30.42759 -29.72983 -27.59050 -25.97552 -24.73853 -23.95899 -23.43436 -22.63465 -20.93470 -19.66831 -18.86983 -18.52819 -18.23345 -17.19485 -16.94770 -16.43014 -16.21721 -16.08069 -15.50512 -15.19788 -15.08612 -14.84933 -14.72340 -14.30759 -14.18028 -13.98445 -13.84125 -13.72797 -13.30341 -13.25622 -13.21236 -13.03745 -12.91430 -12.78224 -12.72867 -12.37913 -12.34756 -12.28523 -12.23335 -12.09376 -11.86109 -11.70812 -11.56532 -11.39164 -11.28503 -11.14203 -11.04157 -10.96327 -10.43658 -9.49944 -8.08474 -6.22833 -0.57184 1.29206 1.40286 1.48418 1.49398 1.56506 1.88497 2.47213 2.52699 2.77099 2.93181 3.22907 3.32186 3.41014 3.65056 3.88916 3.97590 4.00845 4.10225 4.29550 4.40446 4.52964 4.58411 4.69884 4.75794 4.77517 4.79054 4.83122 4.89381 5.00995 5.01280 5.01990 5.19747 5.22776 5.24588 5.28563 5.38816 5.44188 5.49729 5.60391 5.64770 5.74427 5.80991 5.86505 6.11491 6.20868 6.24278 6.91068 7.47308 8.98339 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.008994 B = 0.007201 C = 0.004633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3112.405114 B = 3887.294579 C = 6041.716031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.117 4.117 3 C -0.098 4.098 4 C -0.128 4.128 5 C -0.144 4.144 6 C 0.122 3.878 7 N -0.979 5.979 8 C 0.239 3.761 9 C -0.545 4.545 10 H 0.083 0.917 11 C 0.010 3.990 12 N -0.929 5.929 13 Si 0.952 3.048 14 H -0.260 1.260 15 H -0.297 1.297 16 H -0.264 1.264 17 S 2.583 3.417 18 O -0.956 6.956 19 O -1.011 7.011 20 C -0.575 4.575 21 C -0.088 4.088 22 C 0.211 3.789 23 N -0.444 5.444 24 C -0.111 4.111 25 C -0.114 4.114 26 H 0.079 0.921 27 H 0.035 0.965 28 H 0.063 0.937 29 H 0.020 0.980 30 H 0.055 0.945 31 H 0.105 0.895 32 H 0.058 0.942 33 H 0.044 0.956 34 H 0.056 0.944 35 H 0.072 0.928 36 H 0.034 0.966 37 H 0.086 0.914 38 H 0.100 0.900 39 H 0.065 0.935 40 H -0.004 1.004 41 H 0.262 0.738 42 H 0.144 0.856 43 H 0.189 0.811 44 H 0.144 0.856 45 H 0.116 0.884 46 H 0.152 0.848 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.466 3.952 0.149 17.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.155 4.155 3 C -0.118 4.118 4 C -0.166 4.166 5 C -0.201 4.201 6 C -0.003 4.003 7 N -0.816 5.816 8 C 0.116 3.884 9 C -0.584 4.584 10 H 0.101 0.899 11 C -0.189 4.189 12 N -0.569 5.569 13 Si 0.777 3.223 14 H -0.185 1.185 15 H -0.223 1.223 16 H -0.188 1.188 17 S 2.681 3.319 18 O -0.946 6.946 19 O -1.001 7.001 20 C -0.707 4.707 21 C -0.094 4.094 22 C -0.106 4.106 23 N -0.119 5.119 24 C -0.150 4.150 25 C -0.152 4.152 26 H 0.097 0.903 27 H 0.054 0.946 28 H 0.082 0.918 29 H 0.038 0.962 30 H 0.073 0.927 31 H 0.123 0.877 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.054 0.946 37 H 0.105 0.895 38 H 0.118 0.882 39 H 0.082 0.918 40 H 0.014 0.986 41 H 0.071 0.929 42 H 0.162 0.838 43 H 0.207 0.793 44 H 0.162 0.838 45 H 0.134 0.866 46 H 0.170 0.830 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -16.694 1.436 0.420 16.761 hybrid contribution 1.357 0.918 -0.978 1.908 sum -15.337 2.354 -0.557 15.526 Atomic orbital electron populations 1.21747 0.93968 1.01246 1.02384 1.21571 0.97866 0.96481 0.99555 1.21624 0.95208 0.96335 0.98591 1.21744 0.96426 0.97671 1.00745 1.21755 0.99873 0.96378 1.02113 1.21538 0.96030 0.97400 0.85308 1.57122 1.21936 1.57683 1.44882 1.19216 0.76906 0.94056 0.98218 1.21988 0.93193 1.17111 1.26128 0.89889 1.25812 0.95333 0.99545 0.98228 1.70084 0.98157 1.43227 1.45436 0.85693 0.76810 0.79955 0.79807 1.18473 1.22310 1.18833 1.05487 0.74184 0.75334 0.76888 1.93574 1.54154 1.81290 1.65575 1.93539 1.57516 1.62928 1.86146 1.30176 1.12688 1.10879 1.16909 1.18005 1.00944 0.82739 1.07691 1.28752 0.93145 0.94634 0.94074 1.81195 1.08556 1.14172 1.07983 1.23531 0.97487 1.04614 0.89374 1.23730 0.85408 1.05907 1.00118 0.90258 0.94553 0.91769 0.96163 0.92660 0.87710 0.92300 0.93737 0.92540 0.90934 0.94634 0.89547 0.88180 0.91758 0.98625 0.92943 0.83795 0.79313 0.83759 0.86594 0.83002 0.86315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.68 8.63 71.98 0.62 -3.06 16 2 C -0.12 -3.72 4.86 30.59 0.15 -3.57 16 3 C -0.10 -2.86 2.19 -10.79 -0.02 -2.88 16 4 C -0.13 -4.35 4.84 30.59 0.15 -4.20 16 5 C -0.14 -4.67 8.64 71.98 0.62 -4.05 16 6 C 0.12 3.68 4.90 86.38 0.42 4.10 16 7 N -0.98 -37.22 2.15 -519.87 -1.12 -38.33 16 8 C 0.24 11.48 4.00 85.63 0.34 11.82 16 9 C -0.54 -26.30 9.21 25.60 0.24 -26.06 16 10 H 0.08 3.53 7.81 -2.91 -0.02 3.50 16 11 C 0.01 0.52 5.46 84.66 0.46 0.99 16 12 N -0.93 -52.87 13.29 21.45 0.28 -52.59 16 13 Si 0.95 39.66 29.54 68.60 2.03 41.68 16 14 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 15 H -0.30 -12.79 7.11 99.48 0.71 -12.09 16 16 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 17 S 2.58 97.11 3.69 -56.49 -0.21 96.90 16 18 O -0.96 -33.66 11.37 -127.65 -1.45 -35.11 16 19 O -1.01 -50.26 15.41 -127.65 -1.97 -52.23 16 20 C -0.57 -15.32 6.33 71.98 0.46 -14.86 16 21 C -0.09 -2.10 2.37 -53.96 -0.13 -2.23 16 22 C 0.21 7.24 12.73 89.44 1.14 8.38 16 23 N -0.44 -18.10 18.47 20.00 0.37 -17.73 16 24 C -0.11 -1.53 9.93 30.59 0.30 -1.23 16 25 C -0.11 -1.47 9.86 30.62 0.30 -1.17 16 26 H 0.08 2.16 4.66 -2.39 -0.01 2.15 16 27 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.02 0.77 5.35 -2.39 -0.01 0.76 16 30 H 0.05 1.65 8.12 -2.39 -0.02 1.63 16 31 H 0.10 2.41 8.13 -2.39 -0.02 2.39 16 32 H 0.06 1.82 8.13 -2.39 -0.02 1.80 16 33 H 0.04 1.87 5.13 -2.39 -0.01 1.86 16 34 H 0.06 2.04 5.54 -2.39 -0.01 2.03 16 35 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.09 2.50 6.79 -2.39 -0.02 2.49 16 38 H 0.10 2.42 5.85 -2.39 -0.01 2.41 16 39 H 0.06 3.15 3.34 -2.39 -0.01 3.14 16 40 H 0.00 -0.25 6.98 -2.39 -0.02 -0.27 16 41 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 42 H 0.14 4.24 7.96 -2.39 -0.02 4.23 16 43 H 0.19 3.13 7.90 -2.39 -0.02 3.11 16 44 H 0.14 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 46 H 0.15 1.03 8.05 -2.39 -0.02 1.01 16 47 H 0.12 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -75.35 374.22 3.96 -71.39 By element: Atomic # 1 Polarization: 23.07 SS G_CDS: 0.97 Total: 24.04 kcal Atomic # 6 Polarization: -43.08 SS G_CDS: 5.05 Total: -38.03 kcal Atomic # 7 Polarization: -108.19 SS G_CDS: -0.46 Total: -108.65 kcal Atomic # 8 Polarization: -83.92 SS G_CDS: -3.42 Total: -87.34 kcal Atomic # 14 Polarization: 39.66 SS G_CDS: 2.03 Total: 41.68 kcal Atomic # 16 Polarization: 97.11 SS G_CDS: -0.21 Total: 96.90 kcal Total: -75.35 3.96 -71.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000165202129.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.693 kcal (2) G-P(sol) polarization free energy of solvation -75.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds