Wall clock time and date at job start Tue Mar 31 2020 16:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47152 * 2 1 4 4 C 1.53000 * 109.47152 * 180.02562 * 3 2 1 5 5 C 1.50699 * 109.47631 * 180.02562 * 4 3 2 6 6 O 1.21284 * 119.99473 * 359.97438 * 5 4 3 7 7 N 1.34766 * 120.00748 * 180.02562 * 5 4 3 8 8 C 1.47009 * 122.46351 * 4.09455 * 7 5 4 9 9 S 1.83563 * 104.96780 * 175.93784 * 8 7 5 10 10 C 1.84245 * 94.86141 * 341.52794 * 9 8 7 11 11 C 1.46133 * 122.50418 * 184.15146 * 7 5 4 12 12 H 1.09001 * 109.46998 * 90.75858 * 11 7 5 13 13 C 1.50697 * 109.46773 * 330.76439 * 11 7 5 14 14 O 1.21285 * 120.00311 * 318.41145 * 13 11 7 15 15 N 1.34780 * 120.00259 * 138.40344 * 13 11 7 16 16 C 1.46497 * 120.00194 * 180.02562 * 15 13 11 17 17 C 1.52996 * 109.46999 * 180.02562 * 16 15 13 18 18 C 1.53006 * 109.47276 * 180.02562 * 17 16 15 19 19 C 1.50698 * 109.47240 * 180.02562 * 18 17 16 20 20 H 1.07999 * 120.00290 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00005 * 179.97438 * 19 18 17 22 22 N 1.31514 * 119.99919 * 179.97438 * 21 19 18 23 23 Si 1.86807 * 119.99838 * 359.97438 * 21 19 18 24 24 H 1.48496 * 109.47245 * 90.00311 * 23 21 19 25 25 H 1.48501 * 109.46948 * 210.00081 * 23 21 19 26 26 H 1.48493 * 109.46972 * 329.99829 * 23 21 19 27 27 H 1.09002 * 109.47243 * 300.00229 * 1 2 3 28 28 H 1.08999 * 109.46717 * 60.00270 * 1 2 3 29 29 H 1.08994 * 109.47345 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47601 * 239.99633 * 2 1 3 31 31 H 1.09007 * 109.46807 * 119.99375 * 2 1 3 32 32 H 1.08996 * 109.47572 * 60.00027 * 3 2 1 33 33 H 1.08999 * 109.47089 * 299.99502 * 3 2 1 34 34 H 1.09002 * 109.47243 * 59.99771 * 4 3 2 35 35 H 1.08998 * 109.47235 * 299.99798 * 4 3 2 36 36 H 1.08997 * 110.30941 * 57.08284 * 8 7 5 37 37 H 1.08998 * 110.46684 * 294.87215 * 8 7 5 38 38 H 1.08995 * 111.34699 * 275.51055 * 10 9 8 39 39 H 1.09008 * 111.34693 * 150.77519 * 10 9 8 40 40 H 0.97005 * 119.99704 * 0.02562 * 15 13 11 41 41 H 1.08998 * 109.47016 * 60.00581 * 16 15 13 42 42 H 1.08996 * 109.47079 * 300.00045 * 16 15 13 43 43 H 1.09003 * 109.47346 * 59.99859 * 17 16 15 44 44 H 1.09002 * 109.47188 * 300.00097 * 17 16 15 45 45 H 1.08998 * 109.47035 * 60.00022 * 18 17 16 46 46 H 1.09002 * 109.46935 * 300.00060 * 18 17 16 47 47 H 0.97005 * 119.99805 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0725 2.8632 0.0000 6 8 3.2843 3.7851 0.0004 7 7 5.3974 3.1096 -0.0009 8 6 6.3993 2.0375 -0.0912 9 16 8.0149 2.9045 -0.1779 10 6 7.2956 4.5256 -0.6770 11 6 5.9449 4.4615 0.0888 12 1 6.1080 4.7186 1.1354 13 6 4.9738 5.4382 -0.5228 14 8 4.3991 5.1572 -1.5532 15 7 4.7439 6.6239 0.0752 16 6 3.7995 7.5732 -0.5191 17 6 3.7240 8.8296 0.3506 18 6 2.7372 9.8208 -0.2697 19 6 2.6632 11.0586 0.5866 20 1 3.2600 11.1310 1.4838 21 6 1.8337 12.0987 0.2247 22 7 1.7688 13.1788 0.9723 23 14 0.8020 11.9738 -1.3276 24 1 -0.5132 11.3670 -1.0004 25 1 0.5938 13.3307 -1.8941 26 1 1.5053 11.1247 -2.3223 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6767 1.9564 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 3.9330 0.9287 -0.8908 35 1 3.9337 0.9286 0.8891 36 1 6.2387 1.4444 -0.9915 37 1 6.3576 1.4015 0.7931 38 1 7.1389 4.5753 -1.7545 39 1 7.9098 5.3563 -0.3291 40 1 5.2037 6.8488 0.8992 41 1 2.8130 7.1138 -0.5808 42 1 4.1375 7.8439 -1.5194 43 1 4.7106 9.2889 0.4120 44 1 3.3862 8.5592 1.3511 45 1 1.7506 9.3613 -0.3307 46 1 3.0745 10.0913 -1.2703 47 1 1.1849 13.9104 0.7178 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171499308.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:21 Heat of formation + Delta-G solvation = -84.246523 kcal Electronic energy + Delta-G solvation = -25943.057298 eV Core-core repulsion = 22251.587753 eV Total energy + Delta-G solvation = -3691.469545 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.94943 -38.91578 -36.67099 -35.60729 -35.38259 -33.31929 -32.27148 -31.30459 -30.37123 -27.93132 -27.15374 -25.53034 -24.04949 -22.56948 -21.51479 -20.85328 -20.38473 -19.28162 -17.90324 -17.62352 -17.06886 -16.76415 -16.27045 -15.68531 -15.42880 -15.22152 -15.13423 -14.53299 -14.20445 -14.11628 -14.04733 -13.98672 -13.45885 -13.29138 -13.16971 -12.75947 -12.68833 -12.63652 -12.51500 -11.97593 -11.86348 -11.65051 -11.52714 -11.30052 -11.13746 -11.04485 -10.88887 -10.86407 -10.18240 -10.00237 -9.92417 -9.77545 -9.62226 -9.22886 -9.19307 -8.78582 -8.53962 -8.36132 -6.04977 -4.03444 1.05056 1.42490 2.09883 2.36352 2.80458 3.27336 3.33059 3.40195 3.45031 3.84756 4.21216 4.37629 4.46066 4.47444 4.50391 4.61922 4.64399 4.69570 4.85009 4.88811 4.95515 5.09323 5.14556 5.27225 5.29340 5.50317 5.50887 5.58410 5.62243 5.67349 5.71886 5.87412 5.94518 6.06591 6.09246 6.39619 6.49720 6.72951 6.76027 6.82693 7.25475 7.38891 7.62044 7.78296 7.82358 8.36193 8.52009 8.98901 9.57542 11.08282 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010685 B = 0.002795 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2619.861227 B =10015.964282 C =12173.451930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.123 4.123 3 C -0.107 4.107 4 C -0.132 4.132 5 C 0.522 3.478 6 O -0.493 6.493 7 N -0.613 5.613 8 C 0.154 3.846 9 S -0.254 6.254 10 C -0.065 4.065 11 C 0.114 3.886 12 H 0.102 0.898 13 C 0.525 3.475 14 O -0.521 6.521 15 N -0.719 5.719 16 C 0.120 3.880 17 C -0.112 4.112 18 C -0.011 4.011 19 C -0.521 4.521 20 H 0.072 0.928 21 C 0.067 3.933 22 N -0.904 5.904 23 Si 0.879 3.121 24 H -0.276 1.276 25 H -0.288 1.288 26 H -0.264 1.264 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.106 0.894 38 H 0.110 0.890 39 H 0.132 0.868 40 H 0.397 0.603 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.060 0.940 44 H 0.060 0.940 45 H 0.014 0.986 46 H 0.018 0.982 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.266 -29.834 -0.851 31.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.145 4.145 4 C -0.172 4.172 5 C 0.309 3.691 6 O -0.365 6.365 7 N -0.352 5.352 8 C -0.080 4.080 9 S -0.027 6.027 10 C -0.214 4.214 11 C 0.005 3.995 12 H 0.120 0.880 13 C 0.307 3.693 14 O -0.397 6.397 15 N -0.370 5.370 16 C -0.003 4.003 17 C -0.150 4.150 18 C -0.049 4.049 19 C -0.559 4.559 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.543 5.543 23 Si 0.707 3.293 24 H -0.202 1.202 25 H -0.214 1.214 26 H -0.189 1.189 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.117 0.883 37 H 0.124 0.876 38 H 0.128 0.872 39 H 0.150 0.850 40 H 0.231 0.769 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.078 0.922 45 H 0.033 0.967 46 H 0.036 0.964 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.419 -29.743 -1.397 31.546 hybrid contribution -1.288 0.503 -0.519 1.477 sum 9.131 -29.239 -1.916 30.692 Atomic orbital electron populations 1.21762 0.95556 1.01525 1.02268 1.21529 0.96327 0.96359 1.01838 1.21413 0.92197 0.96843 1.04079 1.21693 0.98537 0.92748 1.04232 1.20731 0.80215 0.92493 0.75642 1.90828 1.53596 1.45809 1.46241 1.48216 1.06019 1.04405 1.76547 1.23902 0.86402 0.91830 1.05828 1.88284 1.12129 1.11585 1.90695 1.24705 0.95145 0.96992 1.04598 1.21784 0.92750 0.83909 1.01079 0.87984 1.19731 0.82297 0.82045 0.85186 1.90700 1.48887 1.75865 1.24209 1.45977 1.45708 1.17212 1.28101 1.21613 0.92302 0.89067 0.97278 1.21701 1.01229 0.93446 0.98666 1.19499 0.94122 0.94547 0.96714 1.21097 1.25662 0.99109 1.10036 0.91009 1.25023 0.96558 0.95154 0.96730 1.69914 1.39168 1.06570 1.38607 0.86779 0.81063 0.77313 0.84182 1.20225 1.21377 1.18900 0.92557 0.92534 0.92778 0.92021 0.92038 0.91019 0.90887 0.88849 0.88815 0.88289 0.87560 0.87190 0.85007 0.76912 0.91623 0.91982 0.92152 0.92151 0.96735 0.96354 0.92714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 37.16 0.37 -0.71 16 2 C -0.12 -0.81 5.93 -26.73 -0.16 -0.97 16 3 C -0.11 -0.95 4.50 -26.73 -0.12 -1.07 16 4 C -0.13 -1.00 4.68 -27.88 -0.13 -1.13 16 5 C 0.52 6.14 7.22 -10.99 -0.08 6.06 16 6 O -0.49 -8.19 12.75 -18.08 -0.23 -8.42 16 7 N -0.61 -6.03 3.13 -168.94 -0.53 -6.56 16 8 C 0.15 0.99 6.82 60.12 0.41 1.40 16 9 S -0.25 -1.95 23.32 -107.50 -2.51 -4.45 16 10 C -0.07 -0.53 7.04 38.43 0.27 -0.26 16 11 C 0.11 1.17 3.29 -68.01 -0.22 0.95 16 12 H 0.10 0.88 8.03 -51.93 -0.42 0.46 16 13 C 0.53 7.69 4.91 -10.99 -0.05 7.63 16 14 O -0.52 -9.81 14.87 -18.08 -0.27 -10.08 16 15 N -0.72 -10.27 5.56 -60.30 -0.33 -10.60 16 16 C 0.12 2.10 5.67 -4.05 -0.02 2.08 16 17 C -0.11 -2.16 5.27 -26.73 -0.14 -2.30 16 18 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 19 C -0.52 -14.89 9.66 -34.44 -0.33 -15.22 16 20 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 21 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 22 N -0.90 -28.04 13.96 55.43 0.77 -27.26 16 23 Si 0.88 22.11 27.47 -169.99 -4.67 17.44 16 24 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 H -0.26 -6.42 6.54 56.52 0.37 -6.05 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 33 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 34 H 0.09 0.55 8.01 -51.93 -0.42 0.13 16 35 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.10 0.52 8.02 -51.93 -0.42 0.10 16 37 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.11 1.01 8.10 -51.93 -0.42 0.59 16 39 H 0.13 0.80 8.14 -51.92 -0.42 0.38 16 40 H 0.40 4.50 8.39 -40.82 -0.34 4.16 16 41 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 42 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 43 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 44 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.01 0.35 7.57 -51.93 -0.39 -0.05 16 46 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 47 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 391.75 15.07 5.90 5.90 Total: -1.00 -36.39 391.75 -10.57 -46.96 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -8.28 Total: -0.88 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: -0.42 Total: -2.04 kcal Atomic # 7 Polarization: -44.33 SS G_CDS: -0.09 Total: -44.42 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: -0.50 Total: -18.50 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.67 Total: 17.44 kcal Atomic # 16 Polarization: -1.95 SS G_CDS: -2.51 Total: -4.45 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.39 -10.57 -46.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171499308.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.291 kcal (2) G-P(sol) polarization free energy of solvation -36.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds