Wall clock time and date at job start Tue Mar 31 2020 16:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47152 * 2 1 4 4 C 1.53000 * 109.47152 * 180.02562 * 3 2 1 5 5 C 1.50699 * 109.47631 * 180.02562 * 4 3 2 6 6 O 1.21284 * 119.99473 * 359.97438 * 5 4 3 7 7 N 1.34766 * 120.00748 * 180.02562 * 5 4 3 8 8 C 1.47009 * 122.46351 * 4.09455 * 7 5 4 9 9 S 1.83563 * 104.96780 * 175.93784 * 8 7 5 10 10 C 1.84245 * 94.86141 * 341.52794 * 9 8 7 11 11 C 1.46133 * 122.50418 * 184.15146 * 7 5 4 12 12 H 1.09001 * 109.46998 * 90.75858 * 11 7 5 13 13 C 1.50697 * 109.46773 * 330.76439 * 11 7 5 14 14 O 1.21285 * 120.00311 * 318.41145 * 13 11 7 15 15 N 1.34780 * 120.00259 * 138.40344 * 13 11 7 16 16 C 1.46497 * 120.00194 * 180.02562 * 15 13 11 17 17 C 1.52996 * 109.46999 * 180.02562 * 16 15 13 18 18 C 1.53006 * 109.47276 * 180.02562 * 17 16 15 19 19 C 1.50698 * 109.47240 * 180.02562 * 18 17 16 20 20 H 1.07999 * 120.00290 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00005 * 179.97438 * 19 18 17 22 22 N 1.31514 * 119.99919 * 179.97438 * 21 19 18 23 23 Si 1.86807 * 119.99838 * 359.97438 * 21 19 18 24 24 H 1.48496 * 109.47245 * 90.00311 * 23 21 19 25 25 H 1.48501 * 109.46948 * 210.00081 * 23 21 19 26 26 H 1.48493 * 109.46972 * 329.99829 * 23 21 19 27 27 H 1.09002 * 109.47243 * 300.00229 * 1 2 3 28 28 H 1.08999 * 109.46717 * 60.00270 * 1 2 3 29 29 H 1.08994 * 109.47345 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47601 * 239.99633 * 2 1 3 31 31 H 1.09007 * 109.46807 * 119.99375 * 2 1 3 32 32 H 1.08996 * 109.47572 * 60.00027 * 3 2 1 33 33 H 1.08999 * 109.47089 * 299.99502 * 3 2 1 34 34 H 1.09002 * 109.47243 * 59.99771 * 4 3 2 35 35 H 1.08998 * 109.47235 * 299.99798 * 4 3 2 36 36 H 1.08997 * 110.30941 * 57.08284 * 8 7 5 37 37 H 1.08998 * 110.46684 * 294.87215 * 8 7 5 38 38 H 1.08995 * 111.34699 * 275.51055 * 10 9 8 39 39 H 1.09008 * 111.34693 * 150.77519 * 10 9 8 40 40 H 0.97005 * 119.99704 * 0.02562 * 15 13 11 41 41 H 1.08998 * 109.47016 * 60.00581 * 16 15 13 42 42 H 1.08996 * 109.47079 * 300.00045 * 16 15 13 43 43 H 1.09003 * 109.47346 * 59.99859 * 17 16 15 44 44 H 1.09002 * 109.47188 * 300.00097 * 17 16 15 45 45 H 1.08998 * 109.47035 * 60.00022 * 18 17 16 46 46 H 1.09002 * 109.46935 * 300.00060 * 18 17 16 47 47 H 0.97005 * 119.99805 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0725 2.8632 0.0000 6 8 3.2843 3.7851 0.0004 7 7 5.3974 3.1096 -0.0009 8 6 6.3993 2.0375 -0.0912 9 16 8.0149 2.9045 -0.1779 10 6 7.2956 4.5256 -0.6770 11 6 5.9449 4.4615 0.0888 12 1 6.1080 4.7186 1.1354 13 6 4.9738 5.4382 -0.5228 14 8 4.3991 5.1572 -1.5532 15 7 4.7439 6.6239 0.0752 16 6 3.7995 7.5732 -0.5191 17 6 3.7240 8.8296 0.3506 18 6 2.7372 9.8208 -0.2697 19 6 2.6632 11.0586 0.5866 20 1 3.2600 11.1310 1.4838 21 6 1.8337 12.0987 0.2247 22 7 1.7688 13.1788 0.9723 23 14 0.8020 11.9738 -1.3276 24 1 -0.5132 11.3670 -1.0004 25 1 0.5938 13.3307 -1.8941 26 1 1.5053 11.1247 -2.3223 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6767 1.9564 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 3.9330 0.9287 -0.8908 35 1 3.9337 0.9286 0.8891 36 1 6.2387 1.4444 -0.9915 37 1 6.3576 1.4015 0.7931 38 1 7.1389 4.5753 -1.7545 39 1 7.9098 5.3563 -0.3291 40 1 5.2037 6.8488 0.8992 41 1 2.8130 7.1138 -0.5808 42 1 4.1375 7.8439 -1.5194 43 1 4.7106 9.2889 0.4120 44 1 3.3862 8.5592 1.3511 45 1 1.7506 9.3613 -0.3307 46 1 3.0745 10.0913 -1.2703 47 1 1.1849 13.9104 0.7178 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171499308.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:20 Heat of formation + Delta-G solvation = -108.189845 kcal Electronic energy + Delta-G solvation = -25944.095558 eV Core-core repulsion = 22251.587753 eV Total energy + Delta-G solvation = -3692.507805 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.87886 -40.00017 -37.55905 -36.88781 -36.25126 -35.17131 -33.52721 -32.70525 -31.02669 -29.18413 -28.28818 -26.27734 -25.26994 -23.84629 -22.34774 -22.21402 -21.55358 -20.28080 -19.03853 -18.73299 -18.38862 -17.84262 -17.06604 -16.74364 -16.57633 -16.36191 -16.16711 -15.89012 -15.50677 -15.17920 -14.81562 -14.69502 -14.59019 -14.49309 -14.23049 -13.88573 -13.79968 -13.66595 -13.40642 -13.28937 -13.15453 -12.76821 -12.73190 -12.24246 -12.11202 -12.00496 -11.89874 -11.82557 -11.77576 -11.63350 -11.47882 -11.36503 -10.96097 -10.79022 -10.78349 -10.15235 -10.00517 -8.92657 -8.31929 -6.35620 0.48162 0.81287 1.27640 1.34327 1.35268 1.47484 1.54471 1.83303 2.19094 2.33792 3.03604 3.10648 3.49434 3.61109 3.78503 3.86812 3.98656 4.06850 4.13261 4.15948 4.20910 4.26760 4.31175 4.43750 4.45873 4.47876 4.58014 4.68572 4.84230 4.85590 4.89417 4.94808 4.99106 5.00225 5.08315 5.26561 5.36083 5.36295 5.46825 5.47882 5.51672 5.62096 5.99895 6.24859 6.51491 6.71897 6.99606 7.26084 7.29206 8.84452 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010685 B = 0.002795 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2619.861227 B =10015.964282 C =12173.451930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.116 4.116 3 C -0.105 4.105 4 C -0.123 4.123 5 C 0.512 3.488 6 O -0.553 6.553 7 N -0.614 5.614 8 C 0.152 3.848 9 S -0.253 6.253 10 C -0.062 4.062 11 C 0.116 3.884 12 H 0.124 0.876 13 C 0.523 3.477 14 O -0.567 6.567 15 N -0.713 5.713 16 C 0.136 3.864 17 C -0.098 4.098 18 C -0.011 4.011 19 C -0.530 4.530 20 H 0.040 0.960 21 C 0.007 3.993 22 N -0.949 5.949 23 Si 0.945 3.055 24 H -0.269 1.269 25 H -0.281 1.281 26 H -0.250 1.250 27 H 0.047 0.953 28 H 0.043 0.957 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.050 0.950 33 H 0.040 0.960 34 H 0.117 0.883 35 H 0.129 0.871 36 H 0.116 0.884 37 H 0.138 0.862 38 H 0.096 0.904 39 H 0.153 0.847 40 H 0.413 0.587 41 H 0.042 0.958 42 H 0.057 0.943 43 H 0.071 0.929 44 H 0.060 0.940 45 H 0.013 0.987 46 H 0.022 0.978 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.740 -32.820 -1.177 34.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.153 4.153 3 C -0.144 4.144 4 C -0.163 4.163 5 C 0.302 3.698 6 O -0.429 6.429 7 N -0.351 5.351 8 C -0.080 4.080 9 S -0.026 6.026 10 C -0.211 4.211 11 C 0.007 3.993 12 H 0.141 0.859 13 C 0.308 3.692 14 O -0.445 6.445 15 N -0.366 5.366 16 C 0.012 3.988 17 C -0.136 4.136 18 C -0.049 4.049 19 C -0.568 4.568 20 H 0.058 0.942 21 C -0.190 4.190 22 N -0.589 5.589 23 Si 0.769 3.231 24 H -0.195 1.195 25 H -0.207 1.207 26 H -0.174 1.174 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.135 0.865 35 H 0.147 0.853 36 H 0.134 0.866 37 H 0.156 0.844 38 H 0.115 0.885 39 H 0.171 0.829 40 H 0.249 0.751 41 H 0.060 0.940 42 H 0.076 0.924 43 H 0.089 0.911 44 H 0.079 0.921 45 H 0.032 0.968 46 H 0.040 0.960 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 11.962 -32.770 -1.696 34.926 hybrid contribution -1.692 1.417 -0.346 2.234 sum 10.270 -31.353 -2.042 33.056 Atomic orbital electron populations 1.21805 0.96287 1.02118 1.01328 1.21496 0.95689 0.94751 1.03356 1.21349 0.93587 0.97909 1.01519 1.21755 0.97154 0.90431 1.06930 1.21537 0.80341 0.93582 0.74389 1.90803 1.55186 1.47758 1.49187 1.48342 1.06240 1.05009 1.75526 1.24237 0.84524 0.90958 1.08283 1.88339 1.12767 1.10961 1.90529 1.24674 0.94272 0.98550 1.03601 1.21871 0.92144 0.83258 1.02037 0.85878 1.20467 0.82159 0.82143 0.84470 1.90671 1.50821 1.76678 1.26368 1.45818 1.45133 1.16965 1.28659 1.21168 0.92065 0.88721 0.96845 1.21469 1.00456 0.93173 0.98474 1.19457 0.95460 0.93765 0.96264 1.21436 1.24845 1.00953 1.09561 0.94214 1.25948 0.98048 0.94758 1.00287 1.70050 1.40487 1.07606 1.40779 0.85728 0.79406 0.77813 0.80158 1.19474 1.20655 1.17356 0.93340 0.93746 0.91352 0.90700 0.90122 0.93119 0.94096 0.86469 0.85299 0.86581 0.84382 0.88510 0.82869 0.75080 0.93958 0.92419 0.91066 0.92137 0.96824 0.96015 0.92435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 9.91 71.98 0.71 -1.39 16 2 C -0.12 -1.30 5.93 30.59 0.18 -1.12 16 3 C -0.11 -1.83 4.50 30.59 0.14 -1.69 16 4 C -0.12 -1.57 4.68 29.85 0.14 -1.43 16 5 C 0.51 11.53 7.22 87.66 0.63 12.17 16 6 O -0.55 -18.87 12.75 19.56 0.25 -18.62 16 7 N -0.61 -10.76 3.13 -806.81 -2.53 -13.28 16 8 C 0.15 1.40 6.82 127.67 0.87 2.27 16 9 S -0.25 -3.11 23.32 -56.49 -1.32 -4.43 16 10 C -0.06 -0.88 7.04 72.81 0.51 -0.37 16 11 C 0.12 2.19 3.29 45.14 0.15 2.34 16 12 H 0.12 1.81 8.03 -2.39 -0.02 1.79 16 13 C 0.52 15.19 4.91 87.66 0.43 15.62 16 14 O -0.57 -21.80 14.87 19.56 0.29 -21.51 16 15 N -0.71 -20.11 5.56 -463.08 -2.57 -22.68 16 16 C 0.14 4.78 5.67 86.38 0.49 5.27 16 17 C -0.10 -3.74 5.27 30.59 0.16 -3.58 16 18 C -0.01 -0.55 4.04 29.85 0.12 -0.43 16 19 C -0.53 -30.81 9.66 25.60 0.25 -30.57 16 20 H 0.04 2.49 7.99 -2.91 -0.02 2.47 16 21 C 0.01 0.39 5.47 84.65 0.46 0.86 16 22 N -0.95 -60.03 13.96 21.45 0.30 -59.73 16 23 Si 0.95 45.63 27.47 68.60 1.88 47.52 16 24 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 25 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 26 H -0.25 -11.38 6.54 99.48 0.65 -10.73 16 27 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 32 H 0.05 1.07 8.10 -2.39 -0.02 1.05 16 33 H 0.04 0.95 8.10 -2.39 -0.02 0.93 16 34 H 0.12 0.97 8.01 -2.39 -0.02 0.95 16 35 H 0.13 0.75 8.14 -2.39 -0.02 0.74 16 36 H 0.12 0.74 8.02 -2.39 -0.02 0.72 16 37 H 0.14 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.10 1.67 8.10 -2.39 -0.02 1.65 16 39 H 0.15 1.47 8.14 -2.38 -0.02 1.46 16 40 H 0.41 8.88 8.39 -92.70 -0.78 8.10 16 41 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 43 H 0.07 2.56 8.14 -2.39 -0.02 2.55 16 44 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 45 H 0.01 0.65 7.57 -2.39 -0.02 0.63 16 46 H 0.02 1.02 7.20 -2.39 -0.02 1.00 16 47 H 0.27 15.74 8.31 -92.70 -0.77 14.97 16 Total: -1.00 -82.83 391.75 1.67 -81.17 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: 0.11 Total: 13.63 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: 5.25 Total: -2.05 kcal Atomic # 7 Polarization: -90.90 SS G_CDS: -4.80 Total: -95.70 kcal Atomic # 8 Polarization: -40.67 SS G_CDS: 0.54 Total: -40.13 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 1.88 Total: 47.52 kcal Atomic # 16 Polarization: -3.11 SS G_CDS: -1.32 Total: -4.43 kcal Total: -82.83 1.67 -81.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171499308.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.024 kcal (2) G-P(sol) polarization free energy of solvation -82.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds