Wall clock time and date at job start Tue Mar 31 2020 15:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47261 * 2 1 4 4 C 1.52993 * 109.47063 * 169.22304 * 3 2 1 5 5 C 1.52999 * 109.47196 * 185.00302 * 4 3 2 6 6 C 1.52998 * 109.47001 * 289.22542 * 3 2 1 7 7 N 1.46500 * 109.47044 * 293.51801 * 6 3 2 8 8 C 1.46494 * 120.00295 * 276.77536 * 7 6 3 9 9 C 1.50704 * 109.46820 * 264.60043 * 8 7 6 10 10 H 1.07996 * 120.00209 * 359.97438 * 9 8 7 11 11 C 1.37879 * 120.00055 * 180.02562 * 9 8 7 12 12 N 1.31520 * 120.00101 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00145 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47374 * 59.99516 * 13 11 9 15 15 H 1.48496 * 109.47472 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.46612 * 299.99757 * 13 11 9 17 17 C 1.34782 * 119.99474 * 96.77029 * 7 6 3 18 18 O 1.21283 * 119.99724 * 185.58132 * 17 7 6 19 19 C 1.50700 * 120.00265 * 5.58501 * 17 7 6 20 20 N 1.46498 * 109.46982 * 173.46206 * 19 17 7 21 21 C 1.47023 * 121.01205 * 270.00191 * 20 19 17 22 22 S 1.83706 * 103.10341 * 196.76091 * 21 20 19 23 23 C 1.83781 * 94.16169 * 338.08069 * 22 21 20 24 24 C 1.32766 * 121.01862 * 90.02348 * 20 19 17 25 25 O 1.21277 * 121.80963 * 359.64209 * 24 20 19 26 26 H 1.09001 * 109.46976 * 56.63668 * 1 2 3 27 27 H 1.08994 * 109.47200 * 176.63199 * 1 2 3 28 28 H 1.08994 * 109.47268 * 296.63776 * 1 2 3 29 29 H 1.09001 * 109.46915 * 240.00178 * 2 1 3 30 30 H 1.09006 * 109.46881 * 120.00059 * 2 1 3 31 31 H 1.09004 * 109.46531 * 49.22285 * 3 2 1 32 32 H 1.09003 * 109.47289 * 304.99656 * 4 3 2 33 33 H 1.09001 * 109.47329 * 65.00112 * 4 3 2 34 34 H 1.08996 * 109.47061 * 300.00130 * 5 4 3 35 35 H 1.09001 * 109.47137 * 59.99692 * 5 4 3 36 36 H 1.09001 * 109.47364 * 180.02562 * 5 4 3 37 37 H 1.09001 * 109.46629 * 173.52498 * 6 3 2 38 38 H 1.08994 * 109.47615 * 53.52467 * 6 3 2 39 39 H 1.08994 * 109.47295 * 24.59975 * 8 7 6 40 40 H 1.08997 * 109.47406 * 144.60793 * 8 7 6 41 41 H 0.96995 * 119.99727 * 180.02562 * 12 11 9 42 42 H 1.09000 * 109.47066 * 53.46022 * 19 17 7 43 43 H 1.08996 * 109.46702 * 293.45737 * 19 17 7 44 44 H 1.09000 * 110.69174 * 78.35597 * 21 20 19 45 45 H 1.08994 * 110.68990 * 315.16083 * 21 20 19 46 46 H 1.09006 * 110.85332 * 139.67761 * 23 22 21 47 47 H 1.09003 * 110.85369 * 263.10234 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5460 1.4509 0.2697 5 6 4.0339 2.8958 0.3936 6 6 1.7622 2.0816 -1.3620 7 7 2.5708 1.4172 -2.3873 8 6 3.9632 1.8210 -2.5976 9 6 4.0310 2.8252 -3.7192 10 1 3.1274 3.1316 -4.2251 11 6 5.2469 3.3520 -4.1004 12 7 6.3474 2.9785 -3.4847 13 14 5.3309 4.5973 -5.4902 14 1 4.5184 5.7890 -5.1369 15 1 6.7424 5.0056 -5.7044 16 1 4.7985 3.9865 -6.7348 17 6 2.0335 0.4344 -3.1369 18 8 2.7289 -0.1843 -3.9144 19 6 0.5686 0.1042 -3.0090 20 7 0.1991 -0.8803 -4.0290 21 6 -0.2719 -0.4563 -5.3556 22 16 -1.0655 -1.9739 -6.0204 23 6 -0.1377 -3.1069 -4.9100 24 6 0.2790 -2.1826 -3.7835 25 8 0.6642 -2.6094 -2.7156 26 1 -0.3633 0.5652 -0.8583 27 1 -0.3633 -1.0258 -0.0604 28 1 -0.3633 0.4607 0.9185 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.5283 2.0087 0.7783 32 1 3.7520 0.9172 1.1975 33 1 4.0655 0.9614 -0.5541 34 1 3.8279 3.4296 -0.5340 35 1 3.5144 3.3853 1.2175 36 1 5.1069 2.9018 0.5854 37 1 2.0197 3.1402 -1.3259 38 1 0.7055 1.9729 -1.6057 39 1 4.3533 2.2697 -1.6841 40 1 4.5600 0.9464 -2.8565 41 1 7.2027 3.3494 -3.7526 42 1 -0.0214 1.0102 -3.1478 43 1 0.3743 -0.3079 -2.0189 44 1 0.5662 -0.1534 -5.9832 45 1 -0.9989 0.3508 -5.2662 46 1 -0.7841 -3.9028 -4.5398 47 1 0.7330 -3.5214 -5.4182 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171567886.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:26 Heat of formation + Delta-G solvation = -51.801820 kcal Electronic energy + Delta-G solvation = -28239.372526 eV Core-core repulsion = 24549.309889 eV Total energy + Delta-G solvation = -3690.062637 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.56960 -39.23505 -37.04632 -35.71917 -33.88249 -32.58521 -32.22232 -30.77477 -28.61431 -28.18000 -26.75326 -25.60715 -24.98042 -22.85474 -21.61275 -20.24396 -19.93326 -18.29037 -17.77377 -17.13468 -16.72556 -16.38418 -16.01597 -15.57010 -15.12337 -14.98539 -14.52451 -14.19789 -14.06933 -13.89924 -13.75016 -13.31867 -13.12674 -12.90036 -12.78593 -12.54286 -12.37235 -12.28710 -12.08141 -11.51792 -11.41768 -11.26333 -11.13145 -11.03532 -10.98161 -10.69726 -10.55503 -10.26949 -10.22370 -10.14368 -10.09101 -10.00460 -9.63822 -9.50081 -8.61275 -8.42270 -8.12105 -7.66684 -6.06383 -4.10680 1.27160 1.59541 2.37357 2.69639 3.27831 3.29362 3.33550 3.36810 3.90964 4.01700 4.41494 4.77920 4.87205 4.93180 4.95770 5.03988 5.08854 5.15639 5.19954 5.24665 5.28610 5.36754 5.41007 5.55550 5.71628 5.79039 5.80533 5.88420 5.93976 6.03676 6.11981 6.21018 6.26870 6.38049 6.48228 6.56352 6.80693 6.82428 6.93592 7.11196 7.44381 7.52316 7.85231 7.90448 8.21857 8.35931 8.85688 9.02165 9.53596 11.01227 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010540 B = 0.005051 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2656.005222 B = 5542.242305 C = 7520.682312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.128 4.128 3 C -0.104 4.104 4 C -0.126 4.126 5 C -0.155 4.155 6 C 0.108 3.892 7 N -0.588 5.588 8 C 0.231 3.769 9 C -0.526 4.526 10 H 0.054 0.946 11 C 0.063 3.937 12 N -0.893 5.893 13 Si 0.895 3.105 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.278 1.278 17 C 0.492 3.508 18 O -0.532 6.532 19 C 0.074 3.926 20 N -0.589 5.589 21 C 0.156 3.844 22 S -0.255 6.255 23 C -0.094 4.094 24 C 0.522 3.478 25 O -0.515 6.515 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.051 0.949 33 H 0.081 0.919 34 H 0.073 0.927 35 H 0.042 0.958 36 H 0.052 0.948 37 H 0.083 0.917 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.036 0.964 41 H 0.263 0.737 42 H 0.103 0.897 43 H 0.135 0.865 44 H 0.108 0.892 45 H 0.116 0.884 46 H 0.136 0.864 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.413 -4.756 4.036 16.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.165 4.165 3 C -0.123 4.123 4 C -0.163 4.163 5 C -0.212 4.212 6 C -0.016 4.016 7 N -0.320 5.320 8 C 0.112 3.888 9 C -0.565 4.565 10 H 0.072 0.928 11 C -0.139 4.139 12 N -0.531 5.531 13 Si 0.722 3.278 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.203 1.203 17 C 0.277 3.723 18 O -0.409 6.409 19 C -0.053 4.053 20 N -0.322 5.322 21 C -0.078 4.078 22 S -0.029 6.029 23 C -0.245 4.245 24 C 0.308 3.692 25 O -0.391 6.391 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.102 0.898 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.054 0.946 41 H 0.073 0.927 42 H 0.121 0.879 43 H 0.153 0.847 44 H 0.127 0.873 45 H 0.134 0.866 46 H 0.154 0.846 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -15.457 -5.452 3.315 16.723 hybrid contribution 1.001 1.052 -0.135 1.459 sum -14.456 -4.400 3.179 15.442 Atomic orbital electron populations 1.22006 0.96501 1.01749 1.01471 1.21692 0.95166 0.96890 1.02794 1.21657 0.97125 0.96116 0.97431 1.21728 0.94903 0.97774 1.01880 1.21892 1.00808 0.96523 1.01930 1.21620 0.94446 0.98102 0.87444 1.48161 1.15312 1.34533 1.34016 1.19710 0.75119 0.95953 0.97970 1.21388 0.93157 1.24053 1.17929 0.92815 1.24895 0.95496 0.96885 0.96646 1.69914 0.98195 1.43617 1.41413 0.86620 0.77005 0.81416 0.82723 1.20289 1.21194 1.20332 1.20522 0.89126 0.80887 0.81783 1.90678 1.62108 1.50486 1.37588 1.22310 0.95764 0.92967 0.94256 1.47279 1.65136 1.06164 1.13632 1.24104 1.01688 0.96766 0.85261 1.88199 1.56977 1.03610 1.54153 1.24220 1.04390 0.99775 0.96132 1.19926 0.77941 0.82459 0.88905 1.90770 1.46353 1.76501 1.25458 0.92535 0.92481 0.92504 0.91342 0.91904 0.90687 0.93021 0.90064 0.90786 0.93864 0.92848 0.89832 0.91716 0.92026 0.94596 0.92695 0.87910 0.84747 0.87349 0.86633 0.84593 0.85187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 8.22 37.16 0.31 -1.45 16 2 C -0.13 -1.73 4.87 -26.73 -0.13 -1.86 16 3 C -0.10 -1.40 2.17 -90.62 -0.20 -1.60 16 4 C -0.13 -1.96 4.84 -26.73 -0.13 -2.09 16 5 C -0.15 -2.42 8.62 37.16 0.32 -2.10 16 6 C 0.11 1.62 4.87 -4.04 -0.02 1.60 16 7 N -0.59 -11.62 2.00 -175.07 -0.35 -11.97 16 8 C 0.23 5.69 3.58 -5.19 -0.02 5.67 16 9 C -0.53 -14.27 9.34 -34.44 -0.32 -14.59 16 10 H 0.05 1.45 7.81 -52.49 -0.41 1.04 16 11 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 12 N -0.89 -25.75 13.29 55.43 0.74 -25.01 16 13 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 14 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 15 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 C 0.49 9.88 6.29 -10.98 -0.07 9.81 16 18 O -0.53 -13.20 16.04 5.56 0.09 -13.11 16 19 C 0.07 1.10 3.78 -5.19 -0.02 1.08 16 20 N -0.59 -8.52 2.35 -177.90 -0.42 -8.93 16 21 C 0.16 1.84 7.84 60.13 0.47 2.31 16 22 S -0.25 -2.82 23.55 -107.50 -2.53 -5.36 16 23 C -0.09 -1.06 7.47 36.43 0.27 -0.79 16 24 C 0.52 7.96 7.62 -11.45 -0.09 7.87 16 25 O -0.52 -9.43 16.94 5.56 0.09 -9.34 16 26 H 0.06 0.58 4.72 -51.93 -0.25 0.33 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 1.15 5.38 -51.93 -0.28 0.87 16 30 H 0.06 0.82 8.08 -51.93 -0.42 0.40 16 31 H 0.07 0.86 8.11 -51.93 -0.42 0.44 16 32 H 0.05 0.73 8.11 -51.93 -0.42 0.31 16 33 H 0.08 1.56 5.33 -51.93 -0.28 1.28 16 34 H 0.07 1.32 5.28 -51.93 -0.27 1.05 16 35 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.08 1.29 6.87 -51.93 -0.36 0.93 16 38 H 0.06 0.78 4.61 -51.93 -0.24 0.54 16 39 H 0.06 1.47 3.35 -51.93 -0.17 1.30 16 40 H 0.04 1.04 7.52 -51.93 -0.39 0.65 16 41 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 42 H 0.10 1.20 7.26 -51.93 -0.38 0.82 16 43 H 0.14 1.92 2.42 -51.93 -0.13 1.79 16 44 H 0.11 1.42 8.14 -51.93 -0.42 1.00 16 45 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.14 1.23 8.14 -51.93 -0.42 0.80 16 47 H 0.13 1.38 8.14 -51.93 -0.42 0.96 16 LS Contribution 368.29 15.07 5.55 5.55 Total: -1.00 -33.52 368.29 -8.50 -42.02 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -6.93 Total: 4.33 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: 0.28 Total: 5.51 kcal Atomic # 7 Polarization: -45.88 SS G_CDS: -0.03 Total: -45.91 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: 0.18 Total: -22.45 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: -2.82 SS G_CDS: -2.53 Total: -5.36 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.52 -8.50 -42.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171567886.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.786 kcal (2) G-P(sol) polarization free energy of solvation -33.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds