Wall clock time and date at job start Tue Mar 31 2020 15:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47261 * 2 1 4 4 C 1.52993 * 109.47063 * 169.22304 * 3 2 1 5 5 C 1.52999 * 109.47196 * 185.00302 * 4 3 2 6 6 C 1.52998 * 109.47001 * 289.22542 * 3 2 1 7 7 N 1.46500 * 109.47044 * 293.51801 * 6 3 2 8 8 C 1.46494 * 120.00295 * 276.77536 * 7 6 3 9 9 C 1.50704 * 109.46820 * 264.60043 * 8 7 6 10 10 H 1.07996 * 120.00209 * 359.97438 * 9 8 7 11 11 C 1.37879 * 120.00055 * 180.02562 * 9 8 7 12 12 N 1.31520 * 120.00101 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00145 * 180.02562 * 11 9 8 14 14 H 1.48496 * 109.47374 * 59.99516 * 13 11 9 15 15 H 1.48496 * 109.47472 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.46612 * 299.99757 * 13 11 9 17 17 C 1.34782 * 119.99474 * 96.77029 * 7 6 3 18 18 O 1.21283 * 119.99724 * 185.58132 * 17 7 6 19 19 C 1.50700 * 120.00265 * 5.58501 * 17 7 6 20 20 N 1.46498 * 109.46982 * 173.46206 * 19 17 7 21 21 C 1.47023 * 121.01205 * 270.00191 * 20 19 17 22 22 S 1.83706 * 103.10341 * 196.76091 * 21 20 19 23 23 C 1.83781 * 94.16169 * 338.08069 * 22 21 20 24 24 C 1.32766 * 121.01862 * 90.02348 * 20 19 17 25 25 O 1.21277 * 121.80963 * 359.64209 * 24 20 19 26 26 H 1.09001 * 109.46976 * 56.63668 * 1 2 3 27 27 H 1.08994 * 109.47200 * 176.63199 * 1 2 3 28 28 H 1.08994 * 109.47268 * 296.63776 * 1 2 3 29 29 H 1.09001 * 109.46915 * 240.00178 * 2 1 3 30 30 H 1.09006 * 109.46881 * 120.00059 * 2 1 3 31 31 H 1.09004 * 109.46531 * 49.22285 * 3 2 1 32 32 H 1.09003 * 109.47289 * 304.99656 * 4 3 2 33 33 H 1.09001 * 109.47329 * 65.00112 * 4 3 2 34 34 H 1.08996 * 109.47061 * 300.00130 * 5 4 3 35 35 H 1.09001 * 109.47137 * 59.99692 * 5 4 3 36 36 H 1.09001 * 109.47364 * 180.02562 * 5 4 3 37 37 H 1.09001 * 109.46629 * 173.52498 * 6 3 2 38 38 H 1.08994 * 109.47615 * 53.52467 * 6 3 2 39 39 H 1.08994 * 109.47295 * 24.59975 * 8 7 6 40 40 H 1.08997 * 109.47406 * 144.60793 * 8 7 6 41 41 H 0.96995 * 119.99727 * 180.02562 * 12 11 9 42 42 H 1.09000 * 109.47066 * 53.46022 * 19 17 7 43 43 H 1.08996 * 109.46702 * 293.45737 * 19 17 7 44 44 H 1.09000 * 110.69174 * 78.35597 * 21 20 19 45 45 H 1.08994 * 110.68990 * 315.16083 * 21 20 19 46 46 H 1.09006 * 110.85332 * 139.67761 * 23 22 21 47 47 H 1.09003 * 110.85369 * 263.10234 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5460 1.4509 0.2697 5 6 4.0339 2.8958 0.3936 6 6 1.7622 2.0816 -1.3620 7 7 2.5708 1.4172 -2.3873 8 6 3.9632 1.8210 -2.5976 9 6 4.0310 2.8252 -3.7192 10 1 3.1274 3.1316 -4.2251 11 6 5.2469 3.3520 -4.1004 12 7 6.3474 2.9785 -3.4847 13 14 5.3309 4.5973 -5.4902 14 1 4.5184 5.7890 -5.1369 15 1 6.7424 5.0056 -5.7044 16 1 4.7985 3.9865 -6.7348 17 6 2.0335 0.4344 -3.1369 18 8 2.7289 -0.1843 -3.9144 19 6 0.5686 0.1042 -3.0090 20 7 0.1991 -0.8803 -4.0290 21 6 -0.2719 -0.4563 -5.3556 22 16 -1.0655 -1.9739 -6.0204 23 6 -0.1377 -3.1069 -4.9100 24 6 0.2790 -2.1826 -3.7835 25 8 0.6642 -2.6094 -2.7156 26 1 -0.3633 0.5652 -0.8583 27 1 -0.3633 -1.0258 -0.0604 28 1 -0.3633 0.4607 0.9185 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.5283 2.0087 0.7783 32 1 3.7520 0.9172 1.1975 33 1 4.0655 0.9614 -0.5541 34 1 3.8279 3.4296 -0.5340 35 1 3.5144 3.3853 1.2175 36 1 5.1069 2.9018 0.5854 37 1 2.0197 3.1402 -1.3259 38 1 0.7055 1.9729 -1.6057 39 1 4.3533 2.2697 -1.6841 40 1 4.5600 0.9464 -2.8565 41 1 7.2027 3.3494 -3.7526 42 1 -0.0214 1.0102 -3.1478 43 1 0.3743 -0.3079 -2.0189 44 1 0.5662 -0.1534 -5.9832 45 1 -0.9989 0.3508 -5.2662 46 1 -0.7841 -3.9028 -4.5398 47 1 0.7330 -3.5214 -5.4182 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171567886.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:25 Heat of formation + Delta-G solvation = -73.055240 kcal Electronic energy + Delta-G solvation = -28240.294143 eV Core-core repulsion = 24549.309889 eV Total energy + Delta-G solvation = -3690.984255 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.86017 -40.59115 -38.47571 -36.95635 -35.58503 -34.33837 -33.57760 -31.88025 -30.14304 -29.37817 -28.05866 -27.02073 -26.19096 -24.67813 -22.77814 -21.60073 -21.12887 -19.64701 -18.91292 -18.75963 -18.27713 -17.63878 -17.24564 -17.00413 -16.75857 -16.11176 -16.03913 -15.56063 -15.38025 -15.12248 -14.89006 -14.73386 -14.42213 -14.21715 -13.95676 -13.83435 -13.73689 -13.43312 -13.38007 -13.07412 -12.93386 -12.74110 -12.55844 -12.40557 -12.30007 -12.16484 -12.04340 -11.83669 -11.66083 -11.49776 -11.38220 -11.27489 -11.18973 -10.97141 -10.56704 -9.99248 -9.36448 -8.98752 -8.18313 -6.31755 0.36876 0.65184 1.19356 1.36185 1.39777 1.46630 1.63522 1.78322 2.32696 2.49368 2.99454 3.11317 3.58886 3.81760 3.90189 3.96858 3.98218 4.01180 4.07973 4.19251 4.24981 4.34308 4.37862 4.48664 4.58139 4.59208 4.67890 4.76133 4.81366 4.87824 5.03596 5.09240 5.16381 5.19341 5.25648 5.26414 5.33564 5.44849 5.53724 5.57356 5.66176 5.82013 5.91235 6.13757 6.65869 6.74992 6.82010 7.30348 7.46991 8.87854 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010540 B = 0.005051 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2656.005222 B = 5542.242305 C = 7520.682312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.125 4.125 3 C -0.095 4.095 4 C -0.125 4.125 5 C -0.147 4.147 6 C 0.100 3.900 7 N -0.588 5.588 8 C 0.250 3.750 9 C -0.538 4.538 10 H 0.053 0.947 11 C 0.009 3.991 12 N -0.927 5.927 13 Si 0.960 3.040 14 H -0.258 1.258 15 H -0.283 1.283 16 H -0.280 1.280 17 C 0.483 3.517 18 O -0.594 6.594 19 C 0.082 3.918 20 N -0.593 5.593 21 C 0.148 3.852 22 S -0.231 6.231 23 C -0.091 4.091 24 C 0.510 3.490 25 O -0.555 6.555 26 H 0.067 0.933 27 H 0.049 0.951 28 H 0.083 0.917 29 H 0.027 0.973 30 H 0.065 0.935 31 H 0.116 0.884 32 H 0.066 0.934 33 H 0.033 0.967 34 H 0.048 0.952 35 H 0.079 0.921 36 H 0.036 0.964 37 H 0.083 0.917 38 H 0.104 0.896 39 H 0.068 0.932 40 H -0.026 1.026 41 H 0.264 0.736 42 H 0.145 0.855 43 H 0.145 0.855 44 H 0.090 0.910 45 H 0.152 0.848 46 H 0.162 0.838 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.885 -3.296 4.506 19.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.114 4.114 4 C -0.163 4.163 5 C -0.204 4.204 6 C -0.022 4.022 7 N -0.319 5.319 8 C 0.129 3.871 9 C -0.577 4.577 10 H 0.071 0.929 11 C -0.190 4.190 12 N -0.567 5.567 13 Si 0.785 3.215 14 H -0.182 1.182 15 H -0.208 1.208 16 H -0.206 1.206 17 C 0.271 3.729 18 O -0.475 6.475 19 C -0.044 4.044 20 N -0.324 5.324 21 C -0.085 4.085 22 S -0.006 6.006 23 C -0.242 4.242 24 C 0.297 3.703 25 O -0.434 6.434 26 H 0.086 0.914 27 H 0.068 0.932 28 H 0.102 0.898 29 H 0.046 0.954 30 H 0.083 0.917 31 H 0.134 0.866 32 H 0.085 0.915 33 H 0.052 0.948 34 H 0.067 0.933 35 H 0.097 0.903 36 H 0.055 0.945 37 H 0.101 0.899 38 H 0.122 0.878 39 H 0.085 0.915 40 H -0.008 1.008 41 H 0.073 0.927 42 H 0.163 0.837 43 H 0.162 0.838 44 H 0.108 0.892 45 H 0.169 0.831 46 H 0.179 0.821 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -18.986 -3.964 3.793 19.763 hybrid contribution 2.131 0.541 -0.252 2.213 sum -16.855 -3.423 3.542 17.560 Atomic orbital electron populations 1.21961 0.93913 1.01913 1.03343 1.21639 0.97356 0.96280 1.00986 1.21645 0.95543 0.96618 0.97566 1.21685 0.96447 0.97443 1.00719 1.21803 1.00267 0.96443 1.01899 1.21992 0.95685 0.97682 0.86863 1.48109 1.13922 1.34814 1.35050 1.19188 0.77626 0.92756 0.97530 1.21718 0.93241 1.24222 1.18490 0.92871 1.25776 0.95147 0.98909 0.99122 1.70053 0.98709 1.44930 1.43034 0.85577 0.77303 0.79424 0.79167 1.18220 1.20835 1.20588 1.21517 0.91223 0.79787 0.80415 1.90638 1.64106 1.52527 1.40230 1.22351 0.91923 0.94911 0.95246 1.47453 1.64445 1.06047 1.14461 1.24293 1.02049 0.98427 0.83731 1.88133 1.56086 1.02563 1.53797 1.24258 1.05265 0.99737 0.94965 1.20623 0.77180 0.83203 0.89281 1.90742 1.48075 1.77272 1.27281 0.91428 0.93185 0.89787 0.95407 0.91660 0.86647 0.91503 0.94848 0.93283 0.90258 0.94505 0.89889 0.87807 0.91468 1.00764 0.92689 0.83741 0.83803 0.89158 0.83076 0.82062 0.84766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 8.22 71.98 0.59 -2.28 16 2 C -0.12 -3.21 4.87 30.60 0.15 -3.06 16 3 C -0.09 -2.37 2.17 -10.80 -0.02 -2.39 16 4 C -0.13 -3.95 4.84 30.59 0.15 -3.80 16 5 C -0.15 -4.57 8.62 71.98 0.62 -3.95 16 6 C 0.10 2.83 4.87 86.38 0.42 3.25 16 7 N -0.59 -23.86 2.00 -826.17 -1.66 -25.52 16 8 C 0.25 13.07 3.58 85.64 0.31 13.38 16 9 C -0.54 -30.14 9.34 25.60 0.24 -29.90 16 10 H 0.05 2.91 7.81 -2.91 -0.02 2.88 16 11 C 0.01 0.53 5.46 84.65 0.46 0.99 16 12 N -0.93 -55.73 13.29 21.45 0.28 -55.45 16 13 Si 0.96 44.27 29.54 68.60 2.03 46.30 16 14 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 15 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 16 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 17 C 0.48 19.96 6.29 87.66 0.55 20.51 16 18 O -0.59 -31.36 16.04 -3.04 -0.05 -31.41 16 19 C 0.08 2.34 3.78 85.63 0.32 2.66 16 20 N -0.59 -16.55 2.35 -836.27 -1.96 -18.51 16 21 C 0.15 3.25 7.84 127.67 1.00 4.25 16 22 S -0.23 -4.65 23.55 -56.49 -1.33 -5.98 16 23 C -0.09 -1.96 7.47 71.51 0.53 -1.43 16 24 C 0.51 15.41 7.62 88.24 0.67 16.08 16 25 O -0.55 -20.70 16.94 -3.02 -0.05 -20.76 16 26 H 0.07 1.09 4.72 -2.39 -0.01 1.07 16 27 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.03 0.94 5.38 -2.39 -0.01 0.93 16 30 H 0.06 1.62 8.08 -2.38 -0.02 1.60 16 31 H 0.12 2.08 8.11 -2.38 -0.02 2.06 16 32 H 0.07 1.87 8.11 -2.39 -0.02 1.85 16 33 H 0.03 1.37 5.33 -2.39 -0.01 1.35 16 34 H 0.05 1.76 5.28 -2.39 -0.01 1.75 16 35 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.08 2.40 6.87 -2.39 -0.02 2.38 16 38 H 0.10 2.11 4.61 -2.39 -0.01 2.10 16 39 H 0.07 3.42 3.35 -2.39 -0.01 3.41 16 40 H -0.03 -1.65 7.52 -2.39 -0.02 -1.66 16 41 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 42 H 0.15 2.83 7.26 -2.39 -0.02 2.81 16 43 H 0.14 3.88 2.42 -2.39 -0.01 3.88 16 44 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 45 H 0.15 2.20 8.14 -2.39 -0.02 2.18 16 46 H 0.16 2.60 8.14 -2.38 -0.02 2.58 16 47 H 0.13 2.79 8.14 -2.39 -0.02 2.77 16 Total: -1.00 -80.14 368.29 4.25 -75.89 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: 0.99 Total: 21.11 kcal Atomic # 6 Polarization: 8.32 SS G_CDS: 6.00 Total: 14.32 kcal Atomic # 7 Polarization: -96.14 SS G_CDS: -3.33 Total: -99.48 kcal Atomic # 8 Polarization: -52.07 SS G_CDS: -0.10 Total: -52.17 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Atomic # 16 Polarization: -4.65 SS G_CDS: -1.33 Total: -5.98 kcal Total: -80.14 4.25 -75.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171567886.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.838 kcal (2) G-P(sol) polarization free energy of solvation -80.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds