Wall clock time and date at job start Tue Mar 31 2020 16:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47222 * 2 1 4 4 C 1.52993 * 109.47236 * 239.99448 * 2 1 3 5 5 C 1.50710 * 109.46864 * 119.99713 * 2 1 3 6 6 O 1.21281 * 119.99529 * 10.78333 * 5 2 1 7 7 N 1.34776 * 119.99852 * 190.78319 * 5 2 1 8 8 C 1.47602 * 122.43055 * 356.37223 * 7 5 2 9 9 S 1.84075 * 102.63731 * 204.78818 * 8 7 5 10 10 C 1.84215 * 93.90906 * 326.55946 * 9 8 7 11 11 C 1.45497 * 122.42674 * 176.34509 * 7 5 2 12 12 H 1.09003 * 108.75508 * 299.90823 * 11 7 5 13 13 C 1.50698 * 108.62889 * 58.06492 * 11 7 5 14 14 O 1.21281 * 119.99888 * 5.01769 * 13 11 7 15 15 N 1.34778 * 119.99853 * 185.01371 * 13 11 7 16 16 C 1.46502 * 119.99550 * 180.02562 * 15 13 11 17 17 C 1.53005 * 109.46760 * 179.97438 * 16 15 13 18 18 C 1.53006 * 109.46806 * 179.97438 * 17 16 15 19 19 C 1.50702 * 109.46828 * 179.97438 * 18 17 16 20 20 H 1.08001 * 120.00077 * 0.02562 * 19 18 17 21 21 C 1.37873 * 119.99869 * 180.02562 * 19 18 17 22 22 N 1.31513 * 120.00166 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99985 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.47109 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47212 * 120.00021 * 23 21 19 26 26 H 1.48511 * 109.46874 * 239.99615 * 23 21 19 27 27 H 1.09000 * 109.46851 * 300.00569 * 1 2 3 28 28 H 1.09006 * 109.46798 * 60.00322 * 1 2 3 29 29 H 1.08997 * 109.47478 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47022 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.46954 * 299.99189 * 3 2 1 32 32 H 1.09000 * 109.47672 * 59.99934 * 3 2 1 33 33 H 1.08998 * 109.47212 * 309.09722 * 4 2 1 34 34 H 1.09006 * 109.47379 * 69.09728 * 4 2 1 35 35 H 1.09007 * 109.47768 * 189.09671 * 4 2 1 36 36 H 1.08998 * 110.78100 * 86.49919 * 8 7 5 37 37 H 1.09007 * 110.77590 * 323.06752 * 8 7 5 38 38 H 1.09008 * 111.05381 * 150.26562 * 10 9 8 39 39 H 1.08991 * 111.05529 * 274.20764 * 10 9 8 40 40 H 0.96991 * 120.00122 * 359.97438 * 15 13 11 41 41 H 1.08994 * 109.47138 * 299.99673 * 16 15 13 42 42 H 1.09005 * 109.47148 * 60.00215 * 16 15 13 43 43 H 1.08994 * 109.47136 * 299.99807 * 17 16 15 44 44 H 1.08999 * 109.46765 * 59.99875 * 17 16 15 45 45 H 1.08994 * 109.47282 * 299.99921 * 18 17 16 46 46 H 1.09005 * 109.46959 * 60.00435 * 18 17 16 47 47 H 0.96997 * 120.00431 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 2.0323 -0.7104 1.2306 6 8 1.2616 -1.3383 1.9253 7 7 3.3379 -0.6479 1.5590 8 6 4.3355 0.0343 0.7116 9 16 5.9033 -0.8119 1.1746 10 6 5.3942 -1.0701 2.9260 11 6 3.8662 -1.2474 2.7750 12 1 3.3739 -0.7905 3.6335 13 6 3.5481 -2.7204 2.7629 14 8 3.0243 -3.2197 1.7896 15 7 3.8457 -3.4829 3.8336 16 6 3.5370 -4.9149 3.8216 17 6 3.9735 -5.5418 5.1473 18 6 3.6505 -7.0374 5.1350 19 6 4.0809 -7.6550 6.4405 20 1 4.5387 -7.0421 7.2029 21 6 3.8904 -9.0025 6.6616 22 7 3.3334 -9.7489 5.7331 23 14 4.4233 -9.7679 8.2801 24 1 5.0192 -8.7221 9.1497 25 1 3.2440 -10.3634 8.9581 26 1 5.4311 -10.8270 8.0186 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 3.1301 1.4424 -0.0005 31 1 1.6768 1.9562 -0.8901 32 1 1.6767 1.9564 0.8899 33 1 1.5501 -1.6913 -1.3340 34 1 1.8155 -0.1224 -2.1318 35 1 3.1179 -0.8642 -1.1717 36 1 4.3844 1.0966 0.9507 37 1 4.1127 -0.1156 -0.3448 38 1 5.8535 -1.9683 3.3390 39 1 5.6294 -0.1973 3.5349 40 1 4.2650 -3.0836 4.6118 41 1 2.4641 -5.0542 3.6893 42 1 4.0697 -5.3946 3.0004 43 1 5.0464 -5.4026 5.2792 44 1 3.4411 -5.0622 5.9687 45 1 2.5774 -7.1762 5.0033 46 1 4.1825 -7.5172 4.3135 47 1 3.1990 -10.6968 5.8888 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171632745.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:24 Heat of formation + Delta-G solvation = -63.934023 kcal Electronic energy + Delta-G solvation = -26609.569046 eV Core-core repulsion = 22918.980317 eV Total energy + Delta-G solvation = -3690.588729 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.13938 -39.24565 -36.47956 -36.08124 -35.26837 -33.39333 -32.00341 -30.74278 -28.21282 -27.76903 -27.28846 -26.70769 -24.99258 -23.37250 -21.97748 -20.69782 -20.15810 -19.29142 -17.74299 -17.57628 -16.80963 -16.39364 -15.80396 -15.42941 -15.35808 -15.21652 -14.91250 -14.52232 -14.43881 -14.28347 -14.00742 -13.72191 -13.44937 -13.00178 -12.76551 -12.64392 -12.51294 -12.43960 -12.27921 -12.12428 -11.98826 -11.81917 -11.64750 -11.29833 -11.15347 -10.91636 -10.74561 -10.72180 -10.57007 -10.08033 -9.86277 -9.80410 -9.49786 -9.13357 -8.92867 -8.75510 -8.36923 -8.24985 -6.01120 -4.04287 1.15446 1.53945 2.24038 2.49323 2.71281 3.30291 3.31379 3.37825 3.41372 3.79955 4.08434 4.34555 4.39566 4.44506 4.47358 4.53470 4.61378 4.75837 4.88293 4.91716 5.01422 5.12934 5.22905 5.32717 5.34670 5.45574 5.54300 5.57361 5.64054 5.72055 5.80085 5.82684 5.91317 6.03004 6.18011 6.49044 6.61506 6.83749 6.87328 7.01272 7.64678 7.66920 7.77255 7.92482 7.97771 8.37203 8.41150 9.02648 9.59908 11.10259 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.020299 B = 0.002470 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.071904 B =11331.212881 C =12153.347507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.081 4.081 3 C -0.160 4.160 4 C -0.146 4.146 5 C 0.543 3.457 6 O -0.505 6.505 7 N -0.601 5.601 8 C 0.143 3.857 9 S -0.260 6.260 10 C -0.068 4.068 11 C 0.113 3.887 12 H 0.111 0.889 13 C 0.505 3.495 14 O -0.512 6.512 15 N -0.726 5.726 16 C 0.120 3.880 17 C -0.120 4.120 18 C 0.023 3.977 19 C -0.521 4.521 20 H 0.056 0.944 21 C 0.056 3.944 22 N -0.893 5.893 23 Si 0.893 3.107 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.284 1.284 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.104 0.896 37 H 0.127 0.873 38 H 0.128 0.872 39 H 0.114 0.886 40 H 0.396 0.604 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.054 0.946 44 H 0.054 0.946 45 H 0.019 0.981 46 H 0.019 0.981 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.813 28.199 -12.226 30.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.084 4.084 3 C -0.218 4.218 4 C -0.203 4.203 5 C 0.330 3.670 6 O -0.377 6.377 7 N -0.338 5.338 8 C -0.090 4.090 9 S -0.033 6.033 10 C -0.217 4.217 11 C 0.004 3.996 12 H 0.128 0.872 13 C 0.288 3.712 14 O -0.386 6.386 15 N -0.378 5.378 16 C -0.002 4.002 17 C -0.158 4.158 18 C -0.014 4.014 19 C -0.560 4.560 20 H 0.074 0.926 21 C -0.145 4.145 22 N -0.533 5.533 23 Si 0.721 3.279 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.210 1.210 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.122 0.878 37 H 0.144 0.856 38 H 0.146 0.854 39 H 0.132 0.868 40 H 0.229 0.771 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.037 0.963 46 H 0.037 0.963 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.921 26.985 -13.248 30.123 hybrid contribution -0.385 -0.123 1.929 1.971 sum 1.536 26.862 -11.319 29.190 Atomic orbital electron populations 1.21677 0.91457 1.03399 1.01954 1.20760 0.98315 0.95981 0.93330 1.22327 1.02218 0.93995 1.03236 1.22005 1.01451 1.01311 0.95521 1.20434 0.79963 0.80024 0.86550 1.90752 1.54551 1.40018 1.52382 1.48148 1.07704 1.55982 1.21974 1.24979 0.86218 0.97869 0.99919 1.88571 1.24776 1.77998 1.11993 1.24577 0.93297 1.07909 0.95918 1.21203 0.94528 0.93858 0.90057 0.87180 1.20379 0.79252 0.87878 0.83712 1.90703 1.40930 1.73536 1.33408 1.46106 1.63239 1.10678 1.17781 1.21631 1.00924 0.77667 1.00024 1.21884 1.00157 1.00112 0.93612 1.19033 0.97297 0.87687 0.97399 1.21235 1.40001 0.93605 1.01122 0.92601 1.25036 0.95278 0.97425 0.96778 1.69975 1.43620 1.06249 1.33415 0.86527 0.78326 0.79265 0.83814 1.19766 1.20992 1.21000 0.92130 0.91796 0.91369 0.91015 0.91024 0.91907 0.91224 0.91076 0.91815 0.87816 0.85605 0.85402 0.86767 0.77103 0.91777 0.91822 0.92759 0.92734 0.96270 0.96288 0.92973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.15 7.82 37.16 0.29 -0.86 16 2 C -0.08 -0.71 0.75 -155.66 -0.12 -0.83 16 3 C -0.16 -0.89 8.08 37.16 0.30 -0.59 16 4 C -0.15 -1.19 8.27 37.15 0.31 -0.88 16 5 C 0.54 6.92 5.60 -10.98 -0.06 6.86 16 6 O -0.50 -8.75 14.39 -14.92 -0.21 -8.96 16 7 N -0.60 -6.47 2.75 -169.15 -0.46 -6.93 16 8 C 0.14 1.08 5.32 60.45 0.32 1.40 16 9 S -0.26 -2.45 23.43 -107.50 -2.52 -4.97 16 10 C -0.07 -0.53 7.00 37.98 0.27 -0.27 16 11 C 0.11 1.23 2.92 -68.80 -0.20 1.02 16 12 H 0.11 1.05 8.14 -51.93 -0.42 0.62 16 13 C 0.51 7.81 6.30 -10.99 -0.07 7.74 16 14 O -0.51 -10.21 14.56 -14.92 -0.22 -10.43 16 15 N -0.73 -10.61 5.19 -60.29 -0.31 -10.92 16 16 C 0.12 2.20 5.67 -4.04 -0.02 2.18 16 17 C -0.12 -2.37 5.27 -26.73 -0.14 -2.51 16 18 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 19 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 20 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 21 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 22 N -0.89 -27.15 13.29 55.43 0.74 -26.41 16 23 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 24 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.76 7.98 -51.93 -0.41 0.35 16 30 H 0.07 0.31 3.76 -51.92 -0.20 0.12 16 31 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.71 8.12 -51.93 -0.42 0.29 16 34 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 35 H 0.06 0.52 5.12 -51.93 -0.27 0.25 16 36 H 0.10 0.49 6.80 -51.93 -0.35 0.14 16 37 H 0.13 0.86 4.23 -51.92 -0.22 0.64 16 38 H 0.13 1.01 7.34 -51.92 -0.38 0.63 16 39 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.40 4.42 8.23 -40.82 -0.34 4.08 16 41 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 380.46 15.07 5.73 5.73 Total: -1.00 -36.84 380.46 -9.58 -46.42 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -7.62 Total: -0.40 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: 0.32 Total: 0.24 kcal Atomic # 7 Polarization: -44.22 SS G_CDS: -0.04 Total: -44.26 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.43 Total: -19.39 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: -2.45 SS G_CDS: -2.52 Total: -4.97 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.84 -9.58 -46.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171632745.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.518 kcal (2) G-P(sol) polarization free energy of solvation -36.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds