Wall clock time and date at job start Tue Mar 31 2020 16:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47222 * 2 1 4 4 C 1.52993 * 109.47236 * 239.99448 * 2 1 3 5 5 C 1.50710 * 109.46864 * 119.99713 * 2 1 3 6 6 O 1.21281 * 119.99529 * 10.78333 * 5 2 1 7 7 N 1.34776 * 119.99852 * 190.78319 * 5 2 1 8 8 C 1.47602 * 122.43055 * 356.37223 * 7 5 2 9 9 S 1.84075 * 102.63731 * 204.78818 * 8 7 5 10 10 C 1.84215 * 93.90906 * 326.55946 * 9 8 7 11 11 C 1.45497 * 122.42674 * 176.34509 * 7 5 2 12 12 H 1.09003 * 108.75508 * 299.90823 * 11 7 5 13 13 C 1.50698 * 108.62889 * 58.06492 * 11 7 5 14 14 O 1.21281 * 119.99888 * 5.01769 * 13 11 7 15 15 N 1.34778 * 119.99853 * 185.01371 * 13 11 7 16 16 C 1.46502 * 119.99550 * 180.02562 * 15 13 11 17 17 C 1.53005 * 109.46760 * 179.97438 * 16 15 13 18 18 C 1.53006 * 109.46806 * 179.97438 * 17 16 15 19 19 C 1.50702 * 109.46828 * 179.97438 * 18 17 16 20 20 H 1.08001 * 120.00077 * 0.02562 * 19 18 17 21 21 C 1.37873 * 119.99869 * 180.02562 * 19 18 17 22 22 N 1.31513 * 120.00166 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99985 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.47109 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47212 * 120.00021 * 23 21 19 26 26 H 1.48511 * 109.46874 * 239.99615 * 23 21 19 27 27 H 1.09000 * 109.46851 * 300.00569 * 1 2 3 28 28 H 1.09006 * 109.46798 * 60.00322 * 1 2 3 29 29 H 1.08997 * 109.47478 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47022 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.46954 * 299.99189 * 3 2 1 32 32 H 1.09000 * 109.47672 * 59.99934 * 3 2 1 33 33 H 1.08998 * 109.47212 * 309.09722 * 4 2 1 34 34 H 1.09006 * 109.47379 * 69.09728 * 4 2 1 35 35 H 1.09007 * 109.47768 * 189.09671 * 4 2 1 36 36 H 1.08998 * 110.78100 * 86.49919 * 8 7 5 37 37 H 1.09007 * 110.77590 * 323.06752 * 8 7 5 38 38 H 1.09008 * 111.05381 * 150.26562 * 10 9 8 39 39 H 1.08991 * 111.05529 * 274.20764 * 10 9 8 40 40 H 0.96991 * 120.00122 * 359.97438 * 15 13 11 41 41 H 1.08994 * 109.47138 * 299.99673 * 16 15 13 42 42 H 1.09005 * 109.47148 * 60.00215 * 16 15 13 43 43 H 1.08994 * 109.47136 * 299.99807 * 17 16 15 44 44 H 1.08999 * 109.46765 * 59.99875 * 17 16 15 45 45 H 1.08994 * 109.47282 * 299.99921 * 18 17 16 46 46 H 1.09005 * 109.46959 * 60.00435 * 18 17 16 47 47 H 0.96997 * 120.00431 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 2.0323 -0.7104 1.2306 6 8 1.2616 -1.3383 1.9253 7 7 3.3379 -0.6479 1.5590 8 6 4.3355 0.0343 0.7116 9 16 5.9033 -0.8119 1.1746 10 6 5.3942 -1.0701 2.9260 11 6 3.8662 -1.2474 2.7750 12 1 3.3739 -0.7905 3.6335 13 6 3.5481 -2.7204 2.7629 14 8 3.0243 -3.2197 1.7896 15 7 3.8457 -3.4829 3.8336 16 6 3.5370 -4.9149 3.8216 17 6 3.9735 -5.5418 5.1473 18 6 3.6505 -7.0374 5.1350 19 6 4.0809 -7.6550 6.4405 20 1 4.5387 -7.0421 7.2029 21 6 3.8904 -9.0025 6.6616 22 7 3.3334 -9.7489 5.7331 23 14 4.4233 -9.7679 8.2801 24 1 5.0192 -8.7221 9.1497 25 1 3.2440 -10.3634 8.9581 26 1 5.4311 -10.8270 8.0186 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 3.1301 1.4424 -0.0005 31 1 1.6768 1.9562 -0.8901 32 1 1.6767 1.9564 0.8899 33 1 1.5501 -1.6913 -1.3340 34 1 1.8155 -0.1224 -2.1318 35 1 3.1179 -0.8642 -1.1717 36 1 4.3844 1.0966 0.9507 37 1 4.1127 -0.1156 -0.3448 38 1 5.8535 -1.9683 3.3390 39 1 5.6294 -0.1973 3.5349 40 1 4.2650 -3.0836 4.6118 41 1 2.4641 -5.0542 3.6893 42 1 4.0697 -5.3946 3.0004 43 1 5.0464 -5.4026 5.2792 44 1 3.4411 -5.0622 5.9687 45 1 2.5774 -7.1762 5.0033 46 1 4.1825 -7.5172 4.3135 47 1 3.1990 -10.6968 5.8888 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171632745.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:23 Heat of formation + Delta-G solvation = -88.838954 kcal Electronic energy + Delta-G solvation = -26610.649005 eV Core-core repulsion = 22918.980317 eV Total energy + Delta-G solvation = -3691.668688 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.08277 -40.40888 -37.48914 -37.06013 -36.65441 -35.26750 -33.42208 -32.07489 -28.92858 -28.65698 -28.35894 -27.79351 -25.97918 -24.99252 -23.07775 -22.37745 -21.25644 -20.24466 -18.74256 -18.63359 -18.37819 -17.61715 -16.97898 -16.67920 -16.48911 -16.32246 -16.18247 -15.78821 -15.44573 -15.21407 -14.94237 -14.73995 -14.32242 -14.24221 -13.97431 -13.78168 -13.73654 -13.46091 -13.30241 -13.09291 -12.97956 -12.87350 -12.78527 -12.61737 -12.58515 -12.37213 -11.96324 -11.81496 -11.71940 -11.64962 -11.44380 -11.28003 -11.09192 -10.70770 -10.58965 -10.15818 -9.93698 -8.94587 -8.21683 -6.33798 0.50753 0.89442 1.36597 1.40346 1.40814 1.52607 1.54162 1.65464 2.15575 2.40824 3.03104 3.12101 3.34239 3.52874 3.71927 3.85718 3.90536 3.95248 4.09446 4.13699 4.16223 4.20453 4.28803 4.39712 4.49130 4.63019 4.66676 4.76693 4.86815 4.87965 4.88739 4.92538 4.97103 5.02136 5.12627 5.17984 5.29639 5.32803 5.37862 5.49096 5.66103 5.80955 6.02236 6.18804 6.48997 6.83967 7.00476 7.21515 7.36165 8.90958 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.020299 B = 0.002470 C = 0.002303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.071904 B =11331.212881 C =12153.347507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.080 4.080 3 C -0.153 4.153 4 C -0.143 4.143 5 C 0.533 3.467 6 O -0.564 6.564 7 N -0.602 5.602 8 C 0.149 3.851 9 S -0.304 6.304 10 C -0.052 4.052 11 C 0.116 3.884 12 H 0.130 0.870 13 C 0.497 3.503 14 O -0.564 6.564 15 N -0.714 5.714 16 C 0.136 3.864 17 C -0.099 4.099 18 C 0.023 3.977 19 C -0.539 4.539 20 H 0.069 0.931 21 C -0.006 4.006 22 N -0.937 5.937 23 Si 0.970 3.030 24 H -0.256 1.256 25 H -0.281 1.281 26 H -0.279 1.279 27 H 0.053 0.947 28 H 0.093 0.907 29 H 0.034 0.966 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.063 0.937 33 H 0.037 0.963 34 H 0.104 0.896 35 H 0.064 0.936 36 H 0.145 0.855 37 H 0.134 0.866 38 H 0.128 0.872 39 H 0.158 0.842 40 H 0.416 0.584 41 H 0.036 0.964 42 H 0.047 0.953 43 H 0.074 0.926 44 H 0.067 0.933 45 H -0.013 1.013 46 H -0.009 1.009 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.654 31.520 -11.287 33.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.083 4.083 3 C -0.210 4.210 4 C -0.200 4.200 5 C 0.322 3.678 6 O -0.440 6.440 7 N -0.337 5.337 8 C -0.082 4.082 9 S -0.078 6.078 10 C -0.201 4.201 11 C 0.006 3.994 12 H 0.147 0.853 13 C 0.282 3.718 14 O -0.442 6.442 15 N -0.367 5.367 16 C 0.011 3.989 17 C -0.137 4.137 18 C -0.015 4.015 19 C -0.577 4.577 20 H 0.087 0.913 21 C -0.203 4.203 22 N -0.578 5.578 23 Si 0.794 3.206 24 H -0.180 1.180 25 H -0.206 1.206 26 H -0.205 1.205 27 H 0.072 0.928 28 H 0.112 0.888 29 H 0.053 0.947 30 H 0.105 0.895 31 H 0.113 0.887 32 H 0.082 0.918 33 H 0.057 0.943 34 H 0.122 0.878 35 H 0.083 0.917 36 H 0.162 0.838 37 H 0.151 0.849 38 H 0.146 0.854 39 H 0.176 0.824 40 H 0.253 0.747 41 H 0.055 0.945 42 H 0.065 0.935 43 H 0.093 0.907 44 H 0.086 0.914 45 H 0.005 0.995 46 H 0.009 0.991 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.823 30.367 -12.295 32.984 hybrid contribution -0.994 -1.186 1.574 2.207 sum 2.829 29.182 -10.722 31.217 Atomic orbital electron populations 1.21672 0.92044 1.01559 1.03048 1.20861 0.97931 0.97948 0.91532 1.22317 1.03101 0.91123 1.04486 1.22010 1.01075 1.00320 0.96590 1.21265 0.80169 0.79301 0.87019 1.90718 1.56222 1.42614 1.54490 1.48278 1.07776 1.55434 1.22247 1.25341 0.83805 0.99179 0.99905 1.88778 1.26094 1.78858 1.14055 1.24704 0.90298 1.09902 0.95156 1.21343 0.96963 0.89952 0.91108 0.85259 1.21351 0.77804 0.89949 0.82653 1.90683 1.43111 1.75004 1.35355 1.45858 1.63101 1.08973 1.18790 1.21146 0.98913 0.80090 0.98719 1.21584 1.01476 0.96007 0.94587 1.18947 0.94815 0.91715 0.95977 1.21699 1.39798 0.94233 1.01954 0.91275 1.26076 0.95202 0.98188 1.00868 1.70130 1.44988 1.06695 1.35948 0.85324 0.77924 0.78463 0.78869 1.17961 1.20640 1.20497 0.92766 0.88839 0.94712 0.89481 0.88655 0.91839 0.94344 0.87776 0.91721 0.83784 0.84870 0.85411 0.82446 0.74688 0.94510 0.93496 0.90747 0.91383 0.99470 0.99072 0.92805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.27 7.82 71.98 0.56 -1.71 16 2 C -0.08 -1.32 0.75 -52.93 -0.04 -1.36 16 3 C -0.15 -1.16 8.08 71.98 0.58 -0.58 16 4 C -0.14 -2.20 8.27 71.98 0.60 -1.61 16 5 C 0.53 13.58 5.60 87.66 0.49 14.07 16 6 O -0.56 -20.54 14.39 16.55 0.24 -20.30 16 7 N -0.60 -12.09 2.75 -807.45 -2.22 -14.31 16 8 C 0.15 1.83 5.32 127.56 0.68 2.51 16 9 S -0.30 -5.10 23.43 -56.49 -1.32 -6.42 16 10 C -0.05 -0.66 7.00 72.52 0.51 -0.16 16 11 C 0.12 2.32 2.92 44.97 0.13 2.45 16 12 H 0.13 2.15 8.14 -2.39 -0.02 2.13 16 13 C 0.50 15.52 6.30 87.66 0.55 16.07 16 14 O -0.56 -23.66 14.56 16.54 0.24 -23.42 16 15 N -0.71 -20.71 5.19 -463.05 -2.40 -23.11 16 16 C 0.14 5.17 5.67 86.38 0.49 5.66 16 17 C -0.10 -3.92 5.27 30.60 0.16 -3.76 16 18 C 0.02 1.25 4.97 29.85 0.15 1.39 16 19 C -0.54 -30.57 9.11 25.60 0.23 -30.33 16 20 H 0.07 3.66 7.74 -2.91 -0.02 3.63 16 21 C -0.01 -0.35 5.46 84.65 0.46 0.12 16 22 N -0.94 -58.51 13.29 21.45 0.28 -58.22 16 23 Si 0.97 44.36 29.54 68.60 2.03 46.39 16 24 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 25 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 26 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 27 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.09 1.07 8.14 -2.38 -0.02 1.06 16 29 H 0.03 0.84 7.98 -2.39 -0.02 0.82 16 30 H 0.09 0.37 3.76 -2.38 -0.01 0.36 16 31 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.04 0.82 8.12 -2.39 -0.02 0.80 16 34 H 0.10 0.89 8.12 -2.38 -0.02 0.87 16 35 H 0.06 0.97 5.12 -2.38 -0.01 0.96 16 36 H 0.14 0.69 6.80 -2.39 -0.02 0.67 16 37 H 0.13 1.45 4.23 -2.38 -0.01 1.44 16 38 H 0.13 1.68 7.34 -2.38 -0.02 1.66 16 39 H 0.16 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.42 8.53 8.23 -92.72 -0.76 7.76 16 41 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 43 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 44 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 45 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 46 H -0.01 -0.53 8.14 -2.38 -0.02 -0.55 16 47 H 0.26 15.39 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -86.50 380.46 2.61 -83.90 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 0.21 Total: 12.73 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: 5.56 Total: 2.77 kcal Atomic # 7 Polarization: -91.31 SS G_CDS: -4.34 Total: -95.65 kcal Atomic # 8 Polarization: -44.20 SS G_CDS: 0.48 Total: -43.72 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Atomic # 16 Polarization: -5.10 SS G_CDS: -1.32 Total: -6.42 kcal Total: -86.50 2.61 -83.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171632745.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.944 kcal (2) G-P(sol) polarization free energy of solvation -86.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds