Wall clock time and date at job start Tue Mar 31 2020 15:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52991 * 109.47266 * 2 1 4 4 C 1.53001 * 109.47087 * 185.00035 * 3 2 1 5 5 C 1.53002 * 109.47088 * 65.00142 * 4 3 2 6 6 C 1.50703 * 109.47288 * 65.00368 * 3 2 1 7 7 C 1.41155 * 126.69340 * 84.99411 * 6 3 2 8 8 C 1.37024 * 103.84190 * 180.02562 * 7 6 3 9 9 C 1.47239 * 126.96531 * 180.02562 * 8 7 6 10 10 O 1.21644 * 119.99975 * 354.66836 * 9 8 7 11 11 N 1.34775 * 119.99859 * 174.66211 * 9 8 7 12 12 C 1.36752 * 119.99986 * 3.60151 * 11 9 8 13 13 H 1.08001 * 120.00073 * 306.32878 * 12 11 9 14 14 C 1.39075 * 119.99924 * 126.33982 * 12 11 9 15 15 N 1.31313 * 120.00522 * 3.07602 * 14 12 11 16 16 Si 1.86808 * 119.99866 * 183.07832 * 14 12 11 17 17 H 1.48506 * 109.47064 * 89.99565 * 16 14 12 18 18 H 1.48495 * 109.47217 * 209.99725 * 16 14 12 19 19 H 1.48508 * 109.46915 * 329.99907 * 16 14 12 20 20 C 1.39681 * 119.99949 * 183.59374 * 11 9 8 21 21 C 1.38995 * 120.07947 * 351.43078 * 20 11 9 22 22 C 1.38082 * 119.91753 * 179.81249 * 21 20 11 23 23 C 1.38313 * 120.07964 * 0.44200 * 22 21 20 24 24 C 1.38319 * 120.16398 * 359.78702 * 23 22 21 25 25 C 1.38082 * 120.07827 * 0.02562 * 24 23 22 26 26 O 1.34684 * 106.07336 * 0.02562 * 8 7 6 27 27 N 1.20885 * 111.44961 * 359.70619 * 26 8 7 28 28 H 1.09000 * 109.47301 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46792 * 300.00306 * 1 2 3 30 30 H 1.09003 * 109.46854 * 59.99529 * 1 2 3 31 31 H 1.08998 * 109.46792 * 239.99694 * 2 1 3 32 32 H 1.09003 * 109.46854 * 120.00471 * 2 1 3 33 33 H 1.09000 * 109.47404 * 305.00205 * 3 2 1 34 34 H 1.09003 * 109.47503 * 185.00244 * 4 3 2 35 35 H 1.09006 * 109.47013 * 305.00109 * 4 3 2 36 36 H 1.09001 * 109.47112 * 180.02562 * 5 4 3 37 37 H 1.09001 * 109.47112 * 299.99615 * 5 4 3 38 38 H 1.08997 * 109.47369 * 60.00047 * 5 4 3 39 39 H 1.08004 * 128.08115 * 0.02583 * 7 6 3 40 40 H 0.96999 * 120.00318 * 185.01358 * 15 14 12 41 41 H 1.07995 * 120.04086 * 359.97438 * 21 20 11 42 42 H 1.07999 * 119.95560 * 180.20806 * 22 21 20 43 43 H 1.08000 * 119.91803 * 179.76772 * 23 22 21 44 44 H 1.07997 * 119.95811 * 179.97438 * 24 23 22 45 45 H 1.07990 * 120.03708 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5649 1.4442 -0.1257 5 6 3.9649 0.8734 -1.4878 6 6 1.6415 2.1162 1.2877 7 6 2.3377 2.0695 2.5147 8 6 1.5712 2.8328 3.3558 9 6 1.8360 3.1249 4.7745 10 8 2.7708 2.5913 5.3411 11 7 1.0427 3.9835 5.4451 12 6 -0.0511 4.5268 4.8299 13 1 0.0591 5.0375 3.8846 14 6 -1.3054 4.4218 5.4214 15 7 -1.4306 3.8545 6.5990 16 14 -2.8121 5.0879 4.5407 17 1 -3.3990 4.0223 3.6889 18 1 -3.8156 5.5300 5.5420 19 1 -2.4195 6.2407 3.6909 20 6 1.3377 4.3185 6.7687 21 6 2.3379 3.6380 7.4532 22 6 2.6294 3.9745 8.7603 23 6 1.9212 4.9810 9.3914 24 6 0.9219 5.6571 8.7150 25 6 0.6276 5.3287 7.4065 26 8 0.5265 3.2618 2.6220 27 7 0.5901 2.8583 1.4843 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6054 1.9815 -0.8418 34 1 3.9357 2.4653 -0.0366 35 1 3.9954 0.8309 0.6659 36 1 5.0513 0.8743 -1.5772 37 1 3.5943 -0.1478 -1.5769 38 1 3.5344 1.4866 -2.2794 39 1 3.2593 1.5528 2.7384 40 1 -2.3121 3.7156 6.9793 41 1 2.8882 2.8489 6.9624 42 1 3.4087 3.4484 9.2916 43 1 2.1488 5.2395 10.4151 44 1 0.3708 6.4422 9.2112 45 1 -0.1530 5.8568 6.8792 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172810311.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:15 Heat of formation + Delta-G solvation = 58.257468 kcal Electronic energy + Delta-G solvation = -28323.626908 eV Core-core repulsion = 24502.892849 eV Total energy + Delta-G solvation = -3820.734060 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.30994 -39.77535 -37.45418 -37.26255 -35.22439 -32.76386 -32.04149 -31.88613 -31.27746 -29.70192 -28.74228 -26.98534 -25.39250 -23.74776 -22.91152 -22.68537 -21.64369 -20.95461 -20.40192 -19.16566 -18.24436 -17.11032 -16.72224 -15.80751 -15.50402 -15.40690 -15.11634 -14.73945 -14.56687 -14.16081 -14.04231 -13.74490 -13.43728 -13.20121 -13.05659 -12.81395 -12.50182 -12.24591 -12.12730 -12.01271 -11.76059 -11.73279 -11.42527 -11.37189 -11.20070 -10.97850 -10.95234 -10.87991 -10.64969 -10.53784 -10.48022 -10.10805 -9.58281 -9.31811 -9.05174 -8.88732 -8.56317 -7.83023 -6.99106 -6.43420 -4.58643 1.43535 2.44190 2.53395 2.63357 3.07594 3.14692 3.16457 3.49232 3.86547 3.96897 4.23386 4.35553 4.67907 4.73399 4.88972 5.08730 5.12817 5.16973 5.21782 5.30614 5.39247 5.59028 5.65347 5.69435 5.69807 5.81762 5.84594 5.86858 5.92809 5.99315 6.04334 6.08956 6.13001 6.17906 6.27388 6.34677 6.44142 6.64332 6.67213 6.79955 7.06429 7.22600 7.44173 7.53066 7.58413 7.66227 8.02679 8.31037 8.65427 8.77071 9.03181 9.38820 10.39483 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013973 B = 0.004087 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.313223 B = 6849.743755 C = 8362.647519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.115 4.115 3 C -0.005 4.005 4 C -0.117 4.117 5 C -0.152 4.152 6 C 0.009 3.991 7 C -0.189 4.189 8 C -0.025 4.025 9 C 0.555 3.445 10 O -0.546 6.546 11 N -0.358 5.358 12 C -0.371 4.371 13 H 0.104 0.896 14 C 0.063 3.937 15 N -0.836 5.836 16 Si 0.919 3.081 17 H -0.270 1.270 18 H -0.280 1.280 19 H -0.262 1.262 20 C 0.182 3.818 21 C -0.181 4.181 22 C -0.123 4.123 23 C -0.165 4.165 24 C -0.125 4.125 25 C -0.081 4.081 26 O 0.149 5.851 27 N -0.370 5.370 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.055 0.945 37 H 0.058 0.942 38 H 0.054 0.946 39 H 0.171 0.829 40 H 0.278 0.722 41 H 0.170 0.830 42 H 0.106 0.894 43 H 0.101 0.899 44 H 0.106 0.894 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.029 -3.365 -8.645 10.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.154 4.154 3 C -0.025 4.025 4 C -0.155 4.155 5 C -0.209 4.209 6 C -0.148 4.148 7 C -0.212 4.212 8 C -0.092 4.092 9 C 0.345 3.655 10 O -0.431 6.431 11 N -0.064 5.064 12 C -0.498 4.498 13 H 0.121 0.879 14 C -0.149 4.149 15 N -0.467 5.467 16 Si 0.744 3.256 17 H -0.195 1.195 18 H -0.205 1.205 19 H -0.186 1.186 20 C 0.086 3.914 21 C -0.200 4.200 22 C -0.141 4.141 23 C -0.184 4.184 24 C -0.144 4.144 25 C -0.101 4.101 26 O 0.077 5.923 27 N -0.070 5.070 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.103 0.897 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.189 0.811 40 H 0.088 0.912 41 H 0.187 0.813 42 H 0.124 0.876 43 H 0.119 0.881 44 H 0.124 0.876 45 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.289 -3.231 -9.047 10.521 hybrid contribution -0.460 -0.065 0.166 0.494 sum 3.829 -3.295 -8.881 10.217 Atomic orbital electron populations 1.21787 0.95558 1.01315 1.02442 1.21606 0.96348 0.94991 1.02412 1.19587 0.95925 0.95294 0.91662 1.21558 0.93917 1.01978 0.98087 1.21822 1.01138 1.01154 0.96818 1.23276 0.93362 1.00619 0.97506 1.22577 1.03159 1.03929 0.91503 1.24158 0.89691 1.00256 0.95063 1.17320 0.84587 0.80598 0.82974 1.90403 1.33710 1.53351 1.65599 1.40830 1.22198 1.34350 1.09056 1.19523 0.84099 1.39047 1.07142 0.87889 1.25630 0.99489 0.94934 0.94817 1.69936 1.25371 1.37258 1.14155 0.86026 0.80418 0.79889 0.79300 1.19482 1.20486 1.18645 1.18077 0.94166 0.94102 0.85081 1.22559 0.99908 1.02691 0.94850 1.20830 1.00066 0.98247 0.95005 1.20812 0.99152 0.99441 0.99043 1.20737 0.98402 1.00457 0.94823 1.20773 0.98428 0.96768 0.94174 1.85382 1.38787 1.54077 1.14042 1.73715 1.20486 1.13475 0.99279 0.92885 0.92352 0.92777 0.90999 0.91551 0.89713 0.91508 0.91246 0.92588 0.92335 0.92732 0.81134 0.91178 0.81336 0.87601 0.88069 0.87636 0.85516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.73 37.16 0.36 -1.53 16 2 C -0.12 -1.29 5.26 -26.73 -0.14 -1.43 16 3 C -0.01 -0.07 2.33 -91.77 -0.21 -0.28 16 4 C -0.12 -1.21 4.93 -26.73 -0.13 -1.35 16 5 C -0.15 -1.25 9.67 37.16 0.36 -0.89 16 6 C 0.01 0.15 5.30 -82.19 -0.44 -0.28 16 7 C -0.19 -3.32 10.17 -38.92 -0.40 -3.72 16 8 C -0.03 -0.53 6.95 -36.37 -0.25 -0.78 16 9 C 0.56 13.14 7.57 -12.60 -0.10 13.05 16 10 O -0.55 -13.14 13.33 5.24 0.07 -13.07 16 11 N -0.36 -8.89 2.69 -60.18 -0.16 -9.05 16 12 C -0.37 -9.08 6.65 -15.05 -0.10 -9.18 16 13 H 0.10 2.47 6.73 -52.49 -0.35 2.12 16 14 C 0.06 1.51 4.13 -17.46 -0.07 1.44 16 15 N -0.84 -21.30 10.92 55.50 0.61 -20.69 16 16 Si 0.92 19.07 29.56 -169.99 -5.02 14.04 16 17 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 18 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 19 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 20 C 0.18 4.45 5.70 -83.72 -0.48 3.97 16 21 C -0.18 -4.19 9.03 -39.36 -0.36 -4.54 16 22 C -0.12 -2.48 10.04 -39.61 -0.40 -2.88 16 23 C -0.17 -3.19 10.04 -39.52 -0.40 -3.59 16 24 C -0.13 -2.55 10.04 -39.61 -0.40 -2.95 16 25 C -0.08 -1.88 7.55 -39.36 -0.30 -2.17 16 26 O 0.15 3.18 8.54 15.43 0.13 3.31 16 27 N -0.37 -7.10 11.65 33.53 0.39 -6.71 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.88 7.07 -51.93 -0.37 0.52 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.65 6.34 -51.93 -0.33 0.32 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.70 7.76 -51.93 -0.40 0.30 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.44 6.46 -51.93 -0.34 0.10 16 38 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.17 2.64 7.80 -52.48 -0.41 2.23 16 40 H 0.28 6.71 8.31 -40.82 -0.34 6.37 16 41 H 0.17 4.03 4.58 -56.03 -0.26 3.77 16 42 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 43 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 44 H 0.11 1.86 8.06 -52.49 -0.42 1.44 16 45 H 0.13 3.03 5.93 -52.49 -0.31 2.72 16 LS Contribution 365.24 15.07 5.50 5.50 Total: -1.00 -27.12 365.24 -8.05 -35.17 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -6.13 Total: 8.59 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: -3.44 Total: -17.11 kcal Atomic # 7 Polarization: -37.29 SS G_CDS: 0.83 Total: -36.45 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.20 Total: -9.75 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.02 Total: 14.04 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -27.12 -8.05 -35.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172810311.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.432 kcal (2) G-P(sol) polarization free energy of solvation -27.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds