Wall clock time and date at job start Tue Mar 31 2020 15:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52991 * 109.47266 * 2 1 4 4 C 1.53001 * 109.47087 * 185.00035 * 3 2 1 5 5 C 1.53002 * 109.47088 * 65.00142 * 4 3 2 6 6 C 1.50703 * 109.47288 * 65.00368 * 3 2 1 7 7 C 1.41155 * 126.69340 * 84.99411 * 6 3 2 8 8 C 1.37024 * 103.84190 * 180.02562 * 7 6 3 9 9 C 1.47239 * 126.96531 * 180.02562 * 8 7 6 10 10 O 1.21644 * 119.99975 * 354.66836 * 9 8 7 11 11 N 1.34775 * 119.99859 * 174.66211 * 9 8 7 12 12 C 1.36752 * 119.99986 * 3.60151 * 11 9 8 13 13 H 1.08001 * 120.00073 * 306.32878 * 12 11 9 14 14 C 1.39075 * 119.99924 * 126.33982 * 12 11 9 15 15 N 1.31313 * 120.00522 * 3.07602 * 14 12 11 16 16 Si 1.86808 * 119.99866 * 183.07832 * 14 12 11 17 17 H 1.48506 * 109.47064 * 89.99565 * 16 14 12 18 18 H 1.48495 * 109.47217 * 209.99725 * 16 14 12 19 19 H 1.48508 * 109.46915 * 329.99907 * 16 14 12 20 20 C 1.39681 * 119.99949 * 183.59374 * 11 9 8 21 21 C 1.38995 * 120.07947 * 351.43078 * 20 11 9 22 22 C 1.38082 * 119.91753 * 179.81249 * 21 20 11 23 23 C 1.38313 * 120.07964 * 0.44200 * 22 21 20 24 24 C 1.38319 * 120.16398 * 359.78702 * 23 22 21 25 25 C 1.38082 * 120.07827 * 0.02562 * 24 23 22 26 26 O 1.34684 * 106.07336 * 0.02562 * 8 7 6 27 27 N 1.20885 * 111.44961 * 359.70619 * 26 8 7 28 28 H 1.09000 * 109.47301 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46792 * 300.00306 * 1 2 3 30 30 H 1.09003 * 109.46854 * 59.99529 * 1 2 3 31 31 H 1.08998 * 109.46792 * 239.99694 * 2 1 3 32 32 H 1.09003 * 109.46854 * 120.00471 * 2 1 3 33 33 H 1.09000 * 109.47404 * 305.00205 * 3 2 1 34 34 H 1.09003 * 109.47503 * 185.00244 * 4 3 2 35 35 H 1.09006 * 109.47013 * 305.00109 * 4 3 2 36 36 H 1.09001 * 109.47112 * 180.02562 * 5 4 3 37 37 H 1.09001 * 109.47112 * 299.99615 * 5 4 3 38 38 H 1.08997 * 109.47369 * 60.00047 * 5 4 3 39 39 H 1.08004 * 128.08115 * 0.02583 * 7 6 3 40 40 H 0.96999 * 120.00318 * 185.01358 * 15 14 12 41 41 H 1.07995 * 120.04086 * 359.97438 * 21 20 11 42 42 H 1.07999 * 119.95560 * 180.20806 * 22 21 20 43 43 H 1.08000 * 119.91803 * 179.76772 * 23 22 21 44 44 H 1.07997 * 119.95811 * 179.97438 * 24 23 22 45 45 H 1.07990 * 120.03708 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5649 1.4442 -0.1257 5 6 3.9649 0.8734 -1.4878 6 6 1.6415 2.1162 1.2877 7 6 2.3377 2.0695 2.5147 8 6 1.5712 2.8328 3.3558 9 6 1.8360 3.1249 4.7745 10 8 2.7708 2.5913 5.3411 11 7 1.0427 3.9835 5.4451 12 6 -0.0511 4.5268 4.8299 13 1 0.0591 5.0375 3.8846 14 6 -1.3054 4.4218 5.4214 15 7 -1.4306 3.8545 6.5990 16 14 -2.8121 5.0879 4.5407 17 1 -3.3990 4.0223 3.6889 18 1 -3.8156 5.5300 5.5420 19 1 -2.4195 6.2407 3.6909 20 6 1.3377 4.3185 6.7687 21 6 2.3379 3.6380 7.4532 22 6 2.6294 3.9745 8.7603 23 6 1.9212 4.9810 9.3914 24 6 0.9219 5.6571 8.7150 25 6 0.6276 5.3287 7.4065 26 8 0.5265 3.2618 2.6220 27 7 0.5901 2.8583 1.4843 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6054 1.9815 -0.8418 34 1 3.9357 2.4653 -0.0366 35 1 3.9954 0.8309 0.6659 36 1 5.0513 0.8743 -1.5772 37 1 3.5943 -0.1478 -1.5769 38 1 3.5344 1.4866 -2.2794 39 1 3.2593 1.5528 2.7384 40 1 -2.3121 3.7156 6.9793 41 1 2.8882 2.8489 6.9624 42 1 3.4087 3.4484 9.2916 43 1 2.1488 5.2395 10.4151 44 1 0.3708 6.4422 9.2112 45 1 -0.1530 5.8568 6.8792 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172810311.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:14 Heat of formation + Delta-G solvation = 46.185195 kcal Electronic energy + Delta-G solvation = -28324.150401 eV Core-core repulsion = 24502.892849 eV Total energy + Delta-G solvation = -3821.257553 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -45.79475 -41.54481 -38.96983 -38.48263 -37.00095 -34.13130 -33.86332 -33.04484 -32.51611 -31.37831 -30.40957 -27.95862 -27.24087 -25.35767 -24.15336 -23.72007 -23.30849 -22.56444 -21.66126 -20.68180 -19.86466 -18.63603 -18.30474 -17.45112 -17.32193 -16.95361 -16.61331 -15.91301 -15.87453 -15.56792 -15.43154 -14.99264 -14.80145 -14.73068 -14.44320 -14.33911 -13.95626 -13.78528 -13.53911 -13.37265 -13.14867 -12.89814 -12.72301 -12.68473 -12.61517 -12.41756 -12.25411 -12.13183 -11.91475 -11.76452 -11.56956 -11.49507 -11.13488 -10.89422 -10.67014 -10.61142 -10.33490 -9.51504 -8.79543 -8.24416 -6.47993 -0.20593 0.81463 0.85910 1.19426 1.39142 1.41784 1.50985 1.87271 2.14221 2.23365 2.65991 2.90461 3.07348 3.36197 3.55661 3.88142 3.99109 4.05102 4.13049 4.25963 4.34536 4.36113 4.37326 4.44819 4.55809 4.60728 4.67709 4.75354 4.83742 4.92723 4.96234 4.99295 5.06337 5.08005 5.08401 5.21964 5.23910 5.31481 5.32693 5.41424 5.42484 5.52104 5.76603 5.84154 5.86199 5.97110 6.21589 6.55670 6.84590 7.10477 7.30386 7.56059 8.55737 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013973 B = 0.004087 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2003.313223 B = 6849.743755 C = 8362.647519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.111 4.111 3 C -0.006 4.006 4 C -0.115 4.115 5 C -0.148 4.148 6 C 0.029 3.971 7 C -0.169 4.169 8 C -0.056 4.056 9 C 0.545 3.455 10 O -0.560 6.560 11 N -0.373 5.373 12 C -0.377 4.377 13 H 0.099 0.901 14 C 0.031 3.969 15 N -0.866 5.866 16 Si 0.975 3.025 17 H -0.275 1.275 18 H -0.271 1.271 19 H -0.256 1.256 20 C 0.151 3.849 21 C -0.204 4.204 22 C -0.121 4.121 23 C -0.156 4.156 24 C -0.125 4.125 25 C -0.100 4.100 26 O 0.117 5.883 27 N -0.384 5.384 28 H 0.067 0.933 29 H 0.022 0.978 30 H 0.060 0.940 31 H 0.104 0.896 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.057 0.943 39 H 0.193 0.807 40 H 0.278 0.722 41 H 0.158 0.842 42 H 0.138 0.862 43 H 0.144 0.856 44 H 0.134 0.866 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.898 -3.941 -9.268 11.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.149 4.149 3 C -0.025 4.025 4 C -0.153 4.153 5 C -0.205 4.205 6 C -0.129 4.129 7 C -0.192 4.192 8 C -0.122 4.122 9 C 0.336 3.664 10 O -0.446 6.446 11 N -0.079 5.079 12 C -0.504 4.504 13 H 0.116 0.884 14 C -0.177 4.177 15 N -0.498 5.498 16 Si 0.797 3.203 17 H -0.201 1.201 18 H -0.196 1.196 19 H -0.180 1.180 20 C 0.055 3.945 21 C -0.224 4.224 22 C -0.139 4.139 23 C -0.175 4.175 24 C -0.144 4.144 25 C -0.121 4.121 26 O 0.050 5.950 27 N -0.088 5.088 28 H 0.086 0.914 29 H 0.041 0.959 30 H 0.079 0.921 31 H 0.123 0.877 32 H 0.081 0.919 33 H 0.108 0.892 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.076 0.924 39 H 0.210 0.790 40 H 0.088 0.912 41 H 0.174 0.826 42 H 0.156 0.844 43 H 0.162 0.838 44 H 0.152 0.848 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 5.162 -3.779 -9.633 11.564 hybrid contribution -0.633 0.071 0.337 0.720 sum 4.529 -3.708 -9.297 10.986 Atomic orbital electron populations 1.21801 0.96599 1.01850 1.00958 1.21629 0.95330 0.94081 1.03857 1.19859 0.97596 0.95739 0.89315 1.21564 0.92007 1.01892 0.99871 1.21799 1.01888 1.01632 0.95182 1.23969 0.91592 0.98712 0.98602 1.22944 1.03068 1.02048 0.91132 1.24021 0.91151 1.02376 0.94640 1.17634 0.84315 0.80382 0.84046 1.90373 1.34030 1.53884 1.66344 1.41032 1.22521 1.34833 1.09563 1.19603 0.84610 1.39169 1.07034 0.88390 1.26262 1.01407 0.94877 0.95161 1.70037 1.25712 1.38711 1.15324 0.85194 0.77495 0.79217 0.78354 1.20059 1.19626 1.18000 1.18436 0.95375 0.95294 0.85371 1.22602 1.00283 1.03076 0.96425 1.21216 1.00511 0.98338 0.93873 1.21253 0.97602 0.97950 1.00654 1.21122 0.98631 1.00895 0.93728 1.20785 0.98583 0.97136 0.95584 1.85343 1.39398 1.55435 1.14803 1.73711 1.21814 1.14672 0.98604 0.91410 0.95906 0.92139 0.87730 0.91859 0.89209 0.92344 0.90852 0.91607 0.91172 0.92382 0.78951 0.91233 0.82593 0.84417 0.83833 0.84770 0.87189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 9.73 71.98 0.70 -2.90 16 2 C -0.11 -2.20 5.26 30.59 0.16 -2.04 16 3 C -0.01 -0.13 2.33 -11.54 -0.03 -0.16 16 4 C -0.12 -2.10 4.93 30.60 0.15 -1.95 16 5 C -0.15 -1.93 9.67 71.98 0.70 -1.23 16 6 C 0.03 0.95 5.30 43.52 0.23 1.18 16 7 C -0.17 -5.99 10.17 22.70 0.23 -5.76 16 8 C -0.06 -2.46 6.95 24.35 0.17 -2.29 16 9 C 0.55 27.16 7.57 86.61 0.66 27.82 16 10 O -0.56 -28.16 13.33 -4.17 -0.06 -28.22 16 11 N -0.37 -19.48 2.69 -462.56 -1.24 -20.72 16 12 C -0.38 -19.40 6.65 84.13 0.56 -18.84 16 13 H 0.10 4.99 6.73 -2.91 -0.02 4.97 16 14 C 0.03 1.55 4.13 84.97 0.35 1.91 16 15 N -0.87 -45.60 10.92 21.68 0.24 -45.37 16 16 Si 0.98 40.21 29.56 68.60 2.03 42.24 16 17 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 18 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 19 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 20 C 0.15 7.65 5.70 38.25 0.22 7.87 16 21 C -0.20 -9.67 9.03 22.41 0.20 -9.47 16 22 C -0.12 -4.72 10.04 22.25 0.22 -4.50 16 23 C -0.16 -5.60 10.04 22.31 0.22 -5.38 16 24 C -0.13 -4.95 10.04 22.25 0.22 -4.72 16 25 C -0.10 -4.76 7.55 22.41 0.17 -4.59 16 26 O 0.12 5.24 8.54 65.41 0.56 5.79 16 27 N -0.38 -15.07 11.65 -48.77 -0.57 -15.63 16 28 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.02 0.67 7.07 -2.39 -0.02 0.66 16 30 H 0.06 1.30 8.14 -2.39 -0.02 1.29 16 31 H 0.10 1.45 6.34 -2.39 -0.02 1.44 16 32 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.07 1.29 7.76 -2.38 -0.02 1.27 16 36 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.07 0.76 6.46 -2.39 -0.02 0.75 16 38 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.19 5.80 7.80 -2.91 -0.02 5.78 16 40 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 41 H 0.16 7.74 4.58 -58.98 -0.27 7.47 16 42 H 0.14 4.40 8.06 -2.91 -0.02 4.38 16 43 H 0.14 3.96 8.06 -2.91 -0.02 3.93 16 44 H 0.13 4.43 8.06 -2.91 -0.02 4.41 16 45 H 0.11 5.48 5.93 -2.92 -0.02 5.46 16 Total: -1.00 -62.04 365.24 6.84 -55.19 By element: Atomic # 1 Polarization: 31.02 SS G_CDS: 0.75 Total: 31.77 kcal Atomic # 6 Polarization: -30.19 SS G_CDS: 5.14 Total: -25.05 kcal Atomic # 7 Polarization: -80.14 SS G_CDS: -1.57 Total: -81.72 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: 0.50 Total: -22.43 kcal Atomic # 14 Polarization: 40.21 SS G_CDS: 2.03 Total: 42.24 kcal Total: -62.04 6.84 -55.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172810311.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.378 kcal (2) G-P(sol) polarization free energy of solvation -62.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds