Wall clock time and date at job start Tue Mar 31 2020 14:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50694 * 109.47099 * 2 1 4 4 N 1.30180 * 126.80436 * 270.16387 * 3 2 1 5 5 O 1.20921 * 111.60470 * 180.25508 * 4 3 2 6 6 C 1.34033 * 111.56907 * 359.74158 * 5 4 3 7 7 C 1.50698 * 126.77804 * 180.02562 * 6 5 4 8 8 C 1.53008 * 109.47066 * 269.99852 * 7 6 5 9 9 C 1.35455 * 106.44663 * 0.02562 * 6 5 4 10 10 C 1.50696 * 128.00426 * 179.97438 * 9 6 5 11 11 N 1.46503 * 109.47097 * 90.00864 * 10 9 6 12 12 C 1.34775 * 120.00199 * 179.97438 * 11 10 9 13 13 O 1.21548 * 120.00236 * 359.97438 * 12 11 10 14 14 C 1.47887 * 119.99987 * 179.97438 * 12 11 10 15 15 C 1.39922 * 120.02312 * 359.72091 * 14 12 11 16 16 C 1.38335 * 120.35868 * 179.78610 * 15 14 12 17 17 C 1.37753 * 120.40679 * 0.47173 * 16 15 14 18 18 C 1.40744 * 120.04382 * 359.78655 * 17 16 15 19 19 C 1.41436 * 120.17915 * 179.97438 * 18 17 16 20 20 H 1.07998 * 120.00447 * 334.93414 * 19 18 17 21 21 C 1.39940 * 119.99831 * 154.93493 * 19 18 17 22 22 N 1.30833 * 120.00073 * 342.57592 * 21 19 18 23 23 Si 1.86800 * 120.00118 * 162.58061 * 21 19 18 24 24 H 1.48502 * 109.47019 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47054 * 119.99489 * 23 21 19 26 26 H 1.48504 * 109.47375 * 239.99886 * 23 21 19 27 27 C 1.38992 * 120.02728 * 180.02562 * 14 12 11 28 28 H 1.09006 * 109.46801 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47377 * 299.99705 * 1 2 3 30 30 H 1.09001 * 109.47013 * 60.00792 * 1 2 3 31 31 H 1.08997 * 109.47715 * 239.99403 * 2 1 3 32 32 H 1.09004 * 109.46732 * 119.99646 * 2 1 3 33 33 H 1.09001 * 109.47204 * 29.99136 * 7 6 5 34 34 H 1.08998 * 109.47557 * 150.00125 * 7 6 5 35 35 H 1.09004 * 109.47089 * 59.99561 * 8 7 6 36 36 H 1.08989 * 109.47554 * 179.97438 * 8 7 6 37 37 H 1.08999 * 109.46868 * 300.00393 * 8 7 6 38 38 H 1.09000 * 109.47046 * 210.00255 * 10 9 6 39 39 H 1.09001 * 109.47739 * 330.00551 * 10 9 6 40 40 H 0.97003 * 119.99488 * 359.97438 * 11 10 9 41 41 H 1.07997 * 119.82582 * 0.02562 * 15 14 12 42 42 H 1.07996 * 119.79795 * 180.23885 * 16 15 14 43 43 H 1.08006 * 119.97855 * 179.76310 * 17 16 15 44 44 H 0.96999 * 119.99884 * 180.02562 * 22 21 19 45 45 H 1.07996 * 120.20049 * 359.94906 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2894 2.1570 -1.0423 5 8 2.6840 3.2552 -0.7253 6 6 2.7357 3.3947 0.6067 7 6 3.1751 4.6179 1.3695 8 6 4.6818 4.5451 1.6259 9 6 2.3151 2.2191 1.1320 10 6 2.1840 1.8467 2.5864 11 7 0.8413 2.1921 3.0598 12 6 0.4941 1.9472 4.3389 13 8 1.2947 1.4395 5.0995 14 6 -0.8611 2.2964 4.8169 15 6 -1.7813 2.8863 3.9433 16 6 -3.0523 3.2117 4.3820 17 6 -3.4236 2.9678 5.6859 18 6 -2.5098 2.3801 6.5806 19 6 -2.8878 2.1289 7.9201 20 1 -3.6706 2.7144 8.3793 21 6 -2.2476 1.1215 8.6507 22 7 -1.5599 0.1986 8.0285 23 14 -2.3749 1.0944 10.5141 24 1 -3.2039 2.2389 10.9703 25 1 -3.0062 -0.1776 10.9487 26 1 -1.0165 1.2000 11.1048 27 6 -1.2197 2.0447 6.1360 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.9485 5.5105 0.7864 34 1 2.6463 4.6618 2.3216 35 1 5.2106 4.5011 0.6738 36 1 4.9997 5.4299 2.1771 37 1 4.9084 3.6524 2.2089 38 1 2.3459 0.7751 2.7030 39 1 2.9263 2.3919 3.1694 40 1 0.2023 2.5970 2.4527 41 1 -1.4991 3.0852 2.9200 42 1 -3.7565 3.6632 3.6990 43 1 -4.4164 3.2282 6.0220 44 1 -1.1164 -0.4998 8.5349 45 1 -0.5113 1.5933 6.8148 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176484782.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:14 Heat of formation + Delta-G solvation = 19.740794 kcal Electronic energy + Delta-G solvation = -27439.843841 eV Core-core repulsion = 23617.439573 eV Total energy + Delta-G solvation = -3822.404268 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -45.10112 -39.26677 -37.16160 -36.22237 -35.17390 -33.94149 -33.60595 -31.59676 -30.62800 -29.98481 -29.46502 -26.99951 -25.27579 -24.77844 -23.83534 -22.55496 -21.42279 -20.91415 -20.00965 -19.56067 -17.89019 -17.71994 -17.10871 -16.21237 -15.54737 -15.47726 -15.10153 -14.84881 -14.56102 -14.44448 -14.25900 -13.85526 -13.74537 -13.26276 -13.09255 -12.88529 -12.74378 -12.63712 -12.55100 -12.46474 -11.97541 -11.72634 -11.65239 -11.57400 -11.38253 -11.19096 -11.10519 -10.88072 -10.75998 -10.51542 -10.18183 -10.03038 -9.71806 -9.53089 -9.24830 -8.98915 -8.75492 -7.66452 -7.54884 -6.82628 -4.44193 1.24630 1.96792 2.16668 2.78040 2.88557 3.06568 3.11045 3.12711 3.77444 3.82200 3.90288 3.98778 4.21115 4.57942 4.63682 4.66228 4.86179 4.90590 4.98233 5.13158 5.18171 5.26041 5.45318 5.54566 5.54904 5.57124 5.66486 5.73740 5.76984 5.80888 5.84848 5.93494 5.97085 6.05223 6.13629 6.23960 6.68765 6.74151 6.95749 6.98117 7.18228 7.35000 7.66529 7.72184 7.88903 8.04093 8.12328 8.15535 8.47670 8.77582 8.80198 8.88289 10.12198 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016362 B = 0.002889 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.829454 B = 9688.970347 C = 9985.635796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.047 4.047 3 C 0.040 3.960 4 N -0.367 5.367 5 O 0.096 5.904 6 C -0.007 4.007 7 C -0.047 4.047 8 C -0.150 4.150 9 C -0.215 4.215 10 C 0.203 3.797 11 N -0.733 5.733 12 C 0.566 3.434 13 O -0.545 6.545 14 C -0.128 4.128 15 C -0.218 4.218 16 C -0.097 4.097 17 C -0.211 4.211 18 C 0.099 3.901 19 C -0.460 4.460 20 H 0.081 0.919 21 C 0.073 3.927 22 N -0.783 5.783 23 Si 0.909 3.091 24 H -0.260 1.260 25 H -0.274 1.274 26 H -0.270 1.270 27 C -0.091 4.091 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.399 0.601 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.096 0.904 44 H 0.284 0.716 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.459 4.144 -12.542 15.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.085 4.085 3 C -0.120 4.120 4 N -0.073 5.073 5 O 0.033 5.967 6 C -0.071 4.071 7 C -0.086 4.086 8 C -0.207 4.207 9 C -0.219 4.219 10 C 0.078 3.922 11 N -0.388 5.388 12 C 0.357 3.643 13 O -0.422 6.422 14 C -0.131 4.131 15 C -0.238 4.238 16 C -0.116 4.116 17 C -0.231 4.231 18 C 0.097 3.903 19 C -0.489 4.489 20 H 0.100 0.900 21 C -0.146 4.146 22 N -0.408 5.408 23 Si 0.734 3.266 24 H -0.183 1.183 25 H -0.199 1.199 26 H -0.195 1.195 27 C -0.111 4.111 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.106 0.894 33 H 0.108 0.892 34 H 0.119 0.881 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.235 0.765 41 H 0.106 0.894 42 H 0.111 0.889 43 H 0.114 0.886 44 H 0.095 0.905 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 9.122 3.350 -13.277 16.453 hybrid contribution -0.409 -0.058 1.097 1.172 sum 8.713 3.292 -12.180 15.334 Atomic orbital electron populations 1.21729 0.93477 1.02677 1.02650 1.19980 0.96856 0.87938 1.03754 1.23479 1.01037 0.99227 0.88237 1.73851 1.16933 0.92681 1.23802 1.84811 1.62397 1.27048 1.22429 1.24401 1.00595 0.98415 0.83724 1.20213 0.97701 0.91636 0.99017 1.21777 0.93522 1.03067 1.02373 1.21003 1.09459 0.94085 0.97375 1.19267 0.85899 1.01065 0.85919 1.46022 1.14287 1.65982 1.12481 1.18853 0.88154 0.76861 0.80475 1.90705 1.52802 1.43603 1.55138 1.19435 0.91893 1.05558 0.96195 1.20324 0.95496 1.10530 0.97417 1.20433 0.95225 1.00223 0.95670 1.21107 0.98637 1.09958 0.93387 1.17601 0.90284 0.89529 0.92934 1.19623 1.17838 1.15194 0.96212 0.90042 1.25963 0.93237 0.94084 1.01286 1.69796 1.23697 1.09013 1.38260 0.86240 0.79197 0.79160 0.82052 1.18341 1.19920 1.19536 1.21630 0.96594 0.99618 0.93259 0.91473 0.91729 0.92568 0.90169 0.89399 0.89158 0.88050 0.92157 0.91044 0.91921 0.90485 0.90515 0.76510 0.89416 0.88949 0.88619 0.90487 0.84855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.89 37.16 0.37 -1.22 16 2 C -0.05 -0.51 6.44 -27.89 -0.18 -0.69 16 3 C 0.04 0.49 6.58 -82.10 -0.54 -0.05 16 4 N -0.37 -4.90 12.07 33.42 0.40 -4.49 16 5 O 0.10 1.18 11.20 17.20 0.19 1.37 16 6 C -0.01 -0.07 6.74 -35.30 -0.24 -0.31 16 7 C -0.05 -0.39 6.30 -27.88 -0.18 -0.56 16 8 C -0.15 -1.07 9.90 37.16 0.37 -0.70 16 9 C -0.21 -2.58 5.69 -104.42 -0.59 -3.18 16 10 C 0.20 2.73 5.92 -5.19 -0.03 2.70 16 11 N -0.73 -11.54 5.50 -62.42 -0.34 -11.88 16 12 C 0.57 11.78 7.77 -12.31 -0.10 11.68 16 13 O -0.54 -13.04 16.33 5.32 0.09 -12.95 16 14 C -0.13 -2.91 5.87 -105.04 -0.62 -3.53 16 15 C -0.22 -4.45 9.55 -38.92 -0.37 -4.82 16 16 C -0.10 -2.03 10.01 -39.72 -0.40 -2.43 16 17 C -0.21 -4.92 9.78 -38.81 -0.38 -5.30 16 18 C 0.10 2.57 5.57 -106.87 -0.59 1.97 16 19 C -0.46 -11.88 9.05 -37.73 -0.34 -12.22 16 20 H 0.08 2.01 7.90 -52.49 -0.41 1.59 16 21 C 0.07 1.82 5.14 -17.34 -0.09 1.74 16 22 N -0.78 -20.39 10.97 55.55 0.61 -19.78 16 23 Si 0.91 18.47 29.59 -169.99 -5.03 13.44 16 24 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 25 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 26 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 27 C -0.09 -2.36 8.23 -38.44 -0.32 -2.68 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.09 0.90 7.65 -51.93 -0.40 0.51 16 33 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.10 0.87 8.05 -51.93 -0.42 0.45 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.42 8.14 -51.94 -0.42 0.00 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.08 1.08 7.65 -51.93 -0.40 0.68 16 39 H 0.08 1.01 8.08 -51.93 -0.42 0.59 16 40 H 0.40 5.76 6.48 -40.82 -0.26 5.50 16 41 H 0.09 1.50 6.38 -52.49 -0.33 1.17 16 42 H 0.09 1.64 8.06 -52.49 -0.42 1.22 16 43 H 0.10 2.08 8.06 -52.48 -0.42 1.66 16 44 H 0.28 6.77 8.30 -40.82 -0.34 6.44 16 45 H 0.13 3.76 5.77 -52.49 -0.30 3.46 16 LS Contribution 382.93 15.07 5.77 5.77 Total: -1.00 -29.56 382.93 -8.85 -38.41 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -6.31 Total: 9.72 kcal Atomic # 6 Polarization: -15.38 SS G_CDS: -4.23 Total: -19.61 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: 0.67 Total: -36.15 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.28 Total: -11.58 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.03 Total: 13.44 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -29.56 -8.85 -38.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176484782.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.151 kcal (2) G-P(sol) polarization free energy of solvation -29.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds