Wall clock time and date at job start Tue Mar 31 2020 14:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50694 * 109.47099 * 2 1 4 4 N 1.30180 * 126.80436 * 270.16387 * 3 2 1 5 5 O 1.20921 * 111.60470 * 180.25508 * 4 3 2 6 6 C 1.34033 * 111.56907 * 359.74158 * 5 4 3 7 7 C 1.50698 * 126.77804 * 180.02562 * 6 5 4 8 8 C 1.53008 * 109.47066 * 269.99852 * 7 6 5 9 9 C 1.35455 * 106.44663 * 0.02562 * 6 5 4 10 10 C 1.50696 * 128.00426 * 179.97438 * 9 6 5 11 11 N 1.46503 * 109.47097 * 90.00864 * 10 9 6 12 12 C 1.34775 * 120.00199 * 179.97438 * 11 10 9 13 13 O 1.21548 * 120.00236 * 359.97438 * 12 11 10 14 14 C 1.47887 * 119.99987 * 179.97438 * 12 11 10 15 15 C 1.39922 * 120.02312 * 359.72091 * 14 12 11 16 16 C 1.38335 * 120.35868 * 179.78610 * 15 14 12 17 17 C 1.37753 * 120.40679 * 0.47173 * 16 15 14 18 18 C 1.40744 * 120.04382 * 359.78655 * 17 16 15 19 19 C 1.41436 * 120.17915 * 179.97438 * 18 17 16 20 20 H 1.07998 * 120.00447 * 334.93414 * 19 18 17 21 21 C 1.39940 * 119.99831 * 154.93493 * 19 18 17 22 22 N 1.30833 * 120.00073 * 342.57592 * 21 19 18 23 23 Si 1.86800 * 120.00118 * 162.58061 * 21 19 18 24 24 H 1.48502 * 109.47019 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.47054 * 119.99489 * 23 21 19 26 26 H 1.48504 * 109.47375 * 239.99886 * 23 21 19 27 27 C 1.38992 * 120.02728 * 180.02562 * 14 12 11 28 28 H 1.09006 * 109.46801 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47377 * 299.99705 * 1 2 3 30 30 H 1.09001 * 109.47013 * 60.00792 * 1 2 3 31 31 H 1.08997 * 109.47715 * 239.99403 * 2 1 3 32 32 H 1.09004 * 109.46732 * 119.99646 * 2 1 3 33 33 H 1.09001 * 109.47204 * 29.99136 * 7 6 5 34 34 H 1.08998 * 109.47557 * 150.00125 * 7 6 5 35 35 H 1.09004 * 109.47089 * 59.99561 * 8 7 6 36 36 H 1.08989 * 109.47554 * 179.97438 * 8 7 6 37 37 H 1.08999 * 109.46868 * 300.00393 * 8 7 6 38 38 H 1.09000 * 109.47046 * 210.00255 * 10 9 6 39 39 H 1.09001 * 109.47739 * 330.00551 * 10 9 6 40 40 H 0.97003 * 119.99488 * 359.97438 * 11 10 9 41 41 H 1.07997 * 119.82582 * 0.02562 * 15 14 12 42 42 H 1.07996 * 119.79795 * 180.23885 * 16 15 14 43 43 H 1.08006 * 119.97855 * 179.76310 * 17 16 15 44 44 H 0.96999 * 119.99884 * 180.02562 * 22 21 19 45 45 H 1.07996 * 120.20049 * 359.94906 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2894 2.1570 -1.0423 5 8 2.6840 3.2552 -0.7253 6 6 2.7357 3.3947 0.6067 7 6 3.1751 4.6179 1.3695 8 6 4.6818 4.5451 1.6259 9 6 2.3151 2.2191 1.1320 10 6 2.1840 1.8467 2.5864 11 7 0.8413 2.1921 3.0598 12 6 0.4941 1.9472 4.3389 13 8 1.2947 1.4395 5.0995 14 6 -0.8611 2.2964 4.8169 15 6 -1.7813 2.8863 3.9433 16 6 -3.0523 3.2117 4.3820 17 6 -3.4236 2.9678 5.6859 18 6 -2.5098 2.3801 6.5806 19 6 -2.8878 2.1289 7.9201 20 1 -3.6706 2.7144 8.3793 21 6 -2.2476 1.1215 8.6507 22 7 -1.5599 0.1986 8.0285 23 14 -2.3749 1.0944 10.5141 24 1 -3.2039 2.2389 10.9703 25 1 -3.0062 -0.1776 10.9487 26 1 -1.0165 1.2000 11.1048 27 6 -1.2197 2.0447 6.1360 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.9485 5.5105 0.7864 34 1 2.6463 4.6618 2.3216 35 1 5.2106 4.5011 0.6738 36 1 4.9997 5.4299 2.1771 37 1 4.9084 3.6524 2.2089 38 1 2.3459 0.7751 2.7030 39 1 2.9263 2.3919 3.1694 40 1 0.2023 2.5970 2.4527 41 1 -1.4991 3.0852 2.9200 42 1 -3.7565 3.6632 3.6990 43 1 -4.4164 3.2282 6.0220 44 1 -1.1164 -0.4998 8.5349 45 1 -0.5113 1.5933 6.8148 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176484782.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:13 Heat of formation + Delta-G solvation = 4.095446 kcal Electronic energy + Delta-G solvation = -27440.522274 eV Core-core repulsion = 23617.439573 eV Total energy + Delta-G solvation = -3823.082701 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -46.05370 -40.89945 -38.86975 -37.36657 -36.02205 -35.62487 -34.97156 -32.62754 -32.01858 -31.29651 -31.11344 -28.24907 -27.08153 -25.62460 -24.66327 -24.04745 -22.84402 -22.39888 -21.28486 -20.78495 -19.56459 -18.68834 -18.30231 -17.70030 -17.14797 -16.71212 -16.46358 -16.41812 -15.81949 -15.53134 -15.29660 -15.11658 -15.01904 -14.64731 -14.40289 -14.26133 -14.05244 -13.89569 -13.59378 -13.46629 -13.41056 -12.95628 -12.78712 -12.75153 -12.55390 -12.51721 -12.34915 -12.17481 -12.10564 -11.89990 -11.70748 -11.49183 -11.17284 -11.07049 -10.79986 -10.28255 -10.19547 -9.46118 -9.37375 -8.65351 -6.36963 0.33545 0.38775 0.98550 1.01487 1.38321 1.47601 1.54037 2.00735 2.10593 2.20733 2.40298 2.79903 3.05435 3.35942 3.63261 3.71340 3.79233 4.01501 4.08456 4.24937 4.27310 4.27892 4.38225 4.41786 4.43665 4.57270 4.58777 4.68265 4.80366 4.91381 4.93220 4.95802 5.00812 5.05390 5.10041 5.10506 5.19538 5.25321 5.31151 5.33157 5.38066 5.53182 5.86978 5.93477 6.06386 6.29653 6.49512 6.66549 6.89638 6.95426 7.20165 7.28092 8.31639 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016362 B = 0.002889 C = 0.002803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.829454 B = 9688.970347 C = 9985.635796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.049 4.049 3 C 0.038 3.962 4 N -0.387 5.387 5 O 0.093 5.907 6 C 0.011 3.989 7 C -0.048 4.048 8 C -0.148 4.148 9 C -0.229 4.229 10 C 0.208 3.792 11 N -0.708 5.708 12 C 0.566 3.434 13 O -0.583 6.583 14 C -0.136 4.136 15 C -0.197 4.197 16 C -0.096 4.096 17 C -0.217 4.217 18 C 0.069 3.931 19 C -0.497 4.497 20 H 0.083 0.917 21 C 0.031 3.969 22 N -0.824 5.824 23 Si 0.981 3.019 24 H -0.252 1.252 25 H -0.265 1.265 26 H -0.270 1.270 27 C -0.127 4.127 28 H 0.078 0.922 29 H 0.049 0.951 30 H 0.055 0.945 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.112 0.888 34 H 0.099 0.901 35 H 0.063 0.937 36 H 0.087 0.913 37 H 0.052 0.948 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.409 0.591 41 H 0.130 0.870 42 H 0.135 0.865 43 H 0.107 0.893 44 H 0.287 0.713 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.337 5.518 -14.262 17.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.087 4.087 3 C -0.122 4.122 4 N -0.094 5.094 5 O 0.032 5.968 6 C -0.053 4.053 7 C -0.086 4.086 8 C -0.206 4.206 9 C -0.233 4.233 10 C 0.084 3.916 11 N -0.361 5.361 12 C 0.357 3.643 13 O -0.464 6.464 14 C -0.139 4.139 15 C -0.217 4.217 16 C -0.114 4.114 17 C -0.237 4.237 18 C 0.066 3.934 19 C -0.527 4.527 20 H 0.101 0.899 21 C -0.184 4.184 22 N -0.450 5.450 23 Si 0.802 3.198 24 H -0.176 1.176 25 H -0.190 1.190 26 H -0.194 1.194 27 C -0.148 4.148 28 H 0.097 0.903 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.130 0.870 34 H 0.118 0.882 35 H 0.082 0.918 36 H 0.105 0.895 37 H 0.071 0.929 38 H 0.091 0.909 39 H 0.100 0.900 40 H 0.246 0.754 41 H 0.148 0.852 42 H 0.153 0.847 43 H 0.125 0.875 44 H 0.097 0.903 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 8.994 4.755 -15.058 18.173 hybrid contribution -0.343 -0.393 1.389 1.484 sum 8.650 4.362 -13.669 16.754 Atomic orbital electron populations 1.21693 0.93403 1.03235 1.01819 1.20059 0.96849 0.87337 1.04443 1.23740 1.00523 0.99779 0.88153 1.73856 1.18009 0.93185 1.24310 1.84802 1.62350 1.26763 1.22929 1.24860 0.98476 0.98720 0.83288 1.20394 0.98238 0.91224 0.98781 1.21778 0.92744 1.03383 1.02660 1.20787 1.11354 0.94871 0.96318 1.19263 0.84398 1.00938 0.86956 1.45788 1.15438 1.64240 1.10667 1.18628 0.87241 0.76781 0.81700 1.90688 1.53593 1.45536 1.56618 1.19727 0.93523 1.05093 0.95573 1.20785 0.94631 1.07531 0.98712 1.20893 0.96086 0.99152 0.95232 1.21397 0.98755 1.09192 0.94326 1.17932 0.90902 0.90654 0.93871 1.19881 1.19171 1.16389 0.97218 0.89927 1.26817 0.92469 0.93210 1.05897 1.69887 1.25152 1.09916 1.40026 0.85171 0.79125 0.79527 0.75995 1.17553 1.18989 1.19450 1.21433 0.96535 1.02273 0.94551 0.90323 0.93213 0.92562 0.89079 0.89147 0.87015 0.88221 0.91779 0.89466 0.92924 0.90937 0.89981 0.75372 0.85207 0.84680 0.87501 0.90294 0.88186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 9.89 71.98 0.71 -2.15 16 2 C -0.05 -0.98 6.44 29.85 0.19 -0.79 16 3 C 0.04 0.87 6.58 43.58 0.29 1.16 16 4 N -0.39 -9.63 12.07 -49.55 -0.60 -10.23 16 5 O 0.09 2.08 11.20 71.70 0.80 2.88 16 6 C 0.01 0.22 6.74 25.04 0.17 0.39 16 7 C -0.05 -0.66 6.30 29.85 0.19 -0.47 16 8 C -0.15 -1.78 9.90 71.98 0.71 -1.06 16 9 C -0.23 -5.09 5.69 -19.74 -0.11 -5.21 16 10 C 0.21 5.34 5.92 85.63 0.51 5.85 16 11 N -0.71 -21.20 5.50 -469.66 -2.58 -23.78 16 12 C 0.57 23.55 7.77 86.80 0.67 24.22 16 13 O -0.58 -28.73 16.33 -3.87 -0.06 -28.79 16 14 C -0.14 -6.20 5.87 -20.13 -0.12 -6.32 16 15 C -0.20 -7.52 9.55 22.70 0.22 -7.30 16 16 C -0.10 -3.72 10.01 22.18 0.22 -3.50 16 17 C -0.22 -9.97 9.78 22.77 0.22 -9.75 16 18 C 0.07 3.66 5.57 -21.32 -0.12 3.55 16 19 C -0.50 -26.71 9.05 23.47 0.21 -26.50 16 20 H 0.08 4.21 7.90 -2.91 -0.02 4.19 16 21 C 0.03 1.60 5.14 85.25 0.44 2.04 16 22 N -0.82 -45.20 10.97 21.83 0.24 -44.96 16 23 Si 0.98 39.05 29.59 68.60 2.03 41.08 16 24 H -0.25 -9.59 7.11 99.48 0.71 -8.88 16 25 H -0.27 -10.06 7.11 99.48 0.71 -9.36 16 26 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 27 C -0.13 -6.89 8.23 23.01 0.19 -6.70 16 28 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 29 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.09 1.75 7.65 -2.39 -0.02 1.74 16 33 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.10 1.45 8.05 -2.39 -0.02 1.43 16 35 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 36 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.07 1.98 7.65 -2.39 -0.02 1.96 16 39 H 0.08 2.07 8.08 -2.39 -0.02 2.05 16 40 H 0.41 10.64 6.48 -92.71 -0.60 10.04 16 41 H 0.13 3.83 6.38 -2.91 -0.02 3.81 16 42 H 0.14 4.12 8.06 -2.91 -0.02 4.10 16 43 H 0.11 4.55 8.06 -2.91 -0.02 4.53 16 44 H 0.29 14.43 8.30 -92.71 -0.77 13.66 16 45 H 0.10 6.04 5.77 -2.91 -0.02 6.02 16 Total: -1.00 -67.33 382.93 4.84 -62.49 By element: Atomic # 1 Polarization: 33.43 SS G_CDS: 0.42 Total: 33.85 kcal Atomic # 6 Polarization: -37.13 SS G_CDS: 4.59 Total: -32.54 kcal Atomic # 7 Polarization: -76.03 SS G_CDS: -2.94 Total: -78.97 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: 0.74 Total: -25.91 kcal Atomic # 14 Polarization: 39.05 SS G_CDS: 2.03 Total: 41.08 kcal Total: -67.33 4.84 -62.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176484782.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.583 kcal (2) G-P(sol) polarization free energy of solvation -67.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds