Wall clock time and date at job start Tue Mar 31 2020 15:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47147 * 2 1 4 4 C 1.50700 * 109.46829 * 120.00003 * 2 1 3 5 5 C 1.35338 * 126.43105 * 322.12888 * 4 2 1 6 6 C 1.41573 * 105.55699 * 180.24782 * 5 4 2 7 7 C 1.47544 * 126.45106 * 179.72037 * 6 5 4 8 8 O 1.21499 * 119.99370 * 0.02562 * 7 6 5 9 9 O 1.34734 * 120.00367 * 180.02562 * 7 6 5 10 10 C 1.45193 * 117.00448 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47549 * 179.97438 * 10 9 7 12 12 C 1.50698 * 109.47141 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99948 * 359.97438 * 12 11 10 14 14 C 1.37880 * 119.99826 * 180.02562 * 12 11 10 15 15 N 1.31510 * 120.00029 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99858 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47135 * 89.99759 * 16 14 12 18 18 H 1.48506 * 109.47059 * 209.99466 * 16 14 12 19 19 H 1.48498 * 109.47058 * 329.99565 * 16 14 12 20 20 N 1.31904 * 107.10458 * 359.74407 * 6 5 4 21 21 N 1.28482 * 110.10717 * 359.97438 * 20 6 5 22 22 C 1.40113 * 124.95091 * 180.02562 * 21 20 6 23 23 C 1.38861 * 120.06481 * 223.25310 * 22 21 20 24 24 C 1.38110 * 119.92585 * 179.97438 * 23 22 21 25 25 C 1.38279 * 120.07216 * 0.02562 * 24 23 22 26 26 C 1.38282 * 120.13661 * 359.97438 * 25 24 23 27 27 C 1.38108 * 120.07144 * 359.97438 * 26 25 24 28 28 H 1.08995 * 109.47619 * 300.00188 * 1 2 3 29 29 H 1.09008 * 109.46595 * 60.00684 * 1 2 3 30 30 H 1.09000 * 109.46877 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47125 * 239.99415 * 2 1 3 32 32 H 1.09002 * 109.46992 * 293.43871 * 3 2 1 33 33 H 1.08998 * 109.47433 * 53.43956 * 3 2 1 34 34 H 1.09000 * 109.47389 * 173.44595 * 3 2 1 35 35 H 1.08004 * 127.21917 * 359.97438 * 5 4 2 36 36 H 1.09004 * 109.46908 * 300.00085 * 10 9 7 37 37 H 1.08996 * 109.47193 * 59.99415 * 10 9 7 38 38 H 1.08993 * 109.46868 * 299.99897 * 11 10 9 39 39 H 1.09000 * 109.46706 * 59.99756 * 11 10 9 40 40 H 0.97004 * 120.00156 * 179.97438 * 15 14 12 41 41 H 1.07996 * 120.03350 * 0.25952 * 23 22 21 42 42 H 1.08003 * 119.96154 * 180.02562 * 24 23 22 43 43 H 1.08002 * 119.93135 * 179.97438 * 25 24 23 44 44 H 1.08002 * 119.96662 * 179.97438 * 26 25 24 45 45 H 1.07997 * 120.03710 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.4897 -0.6536 2.4690 6 6 2.3094 -1.4744 3.2806 7 6 2.1352 -1.7348 4.7224 8 8 1.2139 -1.2212 5.3254 9 8 2.9976 -2.5422 5.3703 10 6 2.7647 -2.7537 6.7877 11 6 3.8367 -3.6916 7.3464 12 6 3.5952 -3.9106 8.8177 13 1 2.7609 -3.4287 9.3056 14 6 4.4401 -4.7254 9.5412 15 7 5.4563 -5.3117 8.9472 16 14 4.1412 -4.9963 11.3651 17 1 3.2522 -6.1710 11.5519 18 1 5.4368 -5.2425 12.0478 19 1 3.4971 -3.7907 11.9456 20 7 3.2587 -1.9621 2.5054 21 7 3.1125 -1.5313 1.3038 22 6 3.9488 -1.8558 0.2275 23 6 4.3537 -0.8685 -0.6611 24 6 5.1785 -1.1914 -1.7207 25 6 5.6006 -2.4963 -1.8977 26 6 5.1990 -3.4816 -1.0145 27 6 4.3752 -3.1650 0.0478 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.7757 1.9212 -0.9429 33 1 1.5840 1.9891 0.8254 34 1 3.1237 1.4447 0.1173 35 1 0.6173 -0.0954 2.7751 36 1 2.8096 -1.7980 7.3099 37 1 1.7809 -3.2004 6.9316 38 1 3.7913 -4.6472 6.8242 39 1 4.8206 -3.2452 7.2025 40 1 6.0510 -5.8847 9.4562 41 1 4.0277 0.1515 -0.5210 42 1 5.4941 -0.4239 -2.4119 43 1 6.2452 -2.7463 -2.7273 44 1 5.5300 -4.5000 -1.1555 45 1 4.0616 -3.9351 0.7369 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178892305.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:34 Heat of formation + Delta-G solvation = 9.319768 kcal Electronic energy + Delta-G solvation = -26827.596734 eV Core-core repulsion = 23004.740576 eV Total energy + Delta-G solvation = -3822.856158 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.14445 -39.73476 -39.27599 -36.23101 -36.00043 -33.90528 -33.27148 -31.49299 -30.39717 -29.92331 -29.53158 -27.61862 -25.68576 -24.34304 -23.75332 -22.81821 -22.09740 -20.88661 -20.45654 -19.77125 -18.17903 -17.23636 -16.82466 -16.53556 -16.20691 -15.77847 -15.70756 -15.21529 -14.83346 -14.60098 -14.46492 -14.24059 -13.99093 -13.81524 -13.40779 -13.27719 -12.98261 -12.71657 -12.56346 -12.32448 -12.08264 -12.01180 -11.71173 -11.45033 -11.29456 -11.18808 -10.99629 -10.87800 -10.71164 -10.68522 -10.35964 -10.12185 -9.59070 -9.57204 -9.46512 -9.24618 -9.16101 -8.75282 -8.39205 -6.05157 -4.09371 0.49387 0.86990 1.57118 1.91999 2.12539 3.17810 3.23969 3.32083 3.37933 3.40023 3.42847 4.05635 4.24921 4.38452 4.42912 4.44959 4.61708 4.65022 4.69568 4.88605 4.95360 5.03079 5.07865 5.22673 5.30097 5.31201 5.32438 5.44940 5.48137 5.51552 5.56654 5.66140 5.81522 5.83510 5.91127 5.94151 6.01717 6.12947 6.16245 6.23951 6.29416 6.70060 6.75989 6.97663 7.61325 7.70016 7.72912 7.93335 8.25532 8.33171 8.96305 9.54517 11.06427 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014730 B = 0.002541 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.390811 B =11016.470873 C =12606.024685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.027 4.027 3 C -0.148 4.148 4 C 0.019 3.981 5 C -0.164 4.164 6 C 0.013 3.987 7 C 0.547 3.453 8 O -0.507 6.507 9 O -0.340 6.340 10 C 0.074 3.926 11 C 0.025 3.975 12 C -0.525 4.525 13 H 0.060 0.940 14 C 0.060 3.940 15 N -0.890 5.890 16 Si 0.900 3.100 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.272 1.272 20 N -0.224 5.224 21 N -0.237 5.237 22 C 0.129 3.871 23 C -0.121 4.121 24 C -0.105 4.105 25 C -0.111 4.111 26 C -0.103 4.103 27 C -0.095 4.095 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.057 0.943 35 H 0.168 0.832 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.029 0.971 39 H 0.029 0.971 40 H 0.263 0.737 41 H 0.138 0.862 42 H 0.134 0.866 43 H 0.131 0.869 44 H 0.136 0.864 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.218 10.935 -28.709 31.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.047 4.047 3 C -0.206 4.206 4 C -0.102 4.102 5 C -0.191 4.191 6 C -0.146 4.146 7 C 0.389 3.611 8 O -0.395 6.395 9 O -0.255 6.255 10 C 0.002 3.998 11 C -0.012 4.012 12 C -0.563 4.563 13 H 0.078 0.922 14 C -0.142 4.142 15 N -0.528 5.528 16 Si 0.727 3.273 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.197 1.197 20 N -0.057 5.057 21 N -0.020 5.020 22 C 0.039 3.961 23 C -0.141 4.141 24 C -0.124 4.124 25 C -0.130 4.130 26 C -0.121 4.121 27 C -0.115 4.115 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.103 0.897 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.186 0.814 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.072 0.928 41 H 0.156 0.844 42 H 0.152 0.848 43 H 0.149 0.851 44 H 0.154 0.846 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.350 10.221 -28.434 30.400 hybrid contribution -0.745 0.222 1.260 1.480 sum -4.095 10.443 -27.174 29.398 Atomic orbital electron populations 1.21838 0.92774 1.02735 1.02733 1.19768 0.96943 0.95399 0.92555 1.21971 1.01133 0.94534 1.02944 1.21602 0.91299 0.99192 0.98087 1.21451 1.03101 1.04066 0.90478 1.21036 0.96986 1.03739 0.92873 1.19518 0.79965 0.76543 0.85057 1.90821 1.31906 1.49350 1.67376 1.86676 1.51144 1.59962 1.27735 1.23715 1.01953 1.00945 0.73194 1.19165 0.93005 0.93903 0.95153 1.20986 1.12874 1.29341 0.93118 0.92210 1.24987 0.94910 0.95471 0.98827 1.69982 1.15632 1.30900 1.36335 0.86472 0.77593 0.78666 0.84575 1.20497 1.21084 1.19711 1.73953 1.22246 1.19688 0.89818 1.42816 1.20129 1.33344 1.05732 1.17545 0.96123 0.94528 0.87875 1.21307 0.98458 0.98961 0.95347 1.21033 0.97026 0.97023 0.97293 1.21353 0.99311 0.92979 0.99336 1.21145 0.96847 1.00320 0.93834 1.21197 0.97579 0.94558 0.98174 0.91590 0.91619 0.92082 0.89727 0.91403 0.91419 0.92445 0.81427 0.92114 0.92116 0.95298 0.95289 0.92753 0.84440 0.84778 0.85109 0.84629 0.84388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.94 8.82 37.16 0.33 -0.61 16 2 C -0.03 -0.20 2.39 -91.77 -0.22 -0.42 16 3 C -0.15 -0.92 8.75 37.15 0.33 -0.59 16 4 C 0.02 0.22 5.62 -81.84 -0.46 -0.24 16 5 C -0.16 -2.26 9.99 -39.34 -0.39 -2.66 16 6 C 0.01 0.23 7.16 -82.77 -0.59 -0.37 16 7 C 0.55 11.22 7.96 34.53 0.27 11.50 16 8 O -0.51 -10.91 16.71 -19.27 -0.32 -11.23 16 9 O -0.34 -7.74 10.23 -40.58 -0.42 -8.15 16 10 C 0.07 1.77 5.41 37.16 0.20 1.97 16 11 C 0.02 0.68 5.35 -27.89 -0.15 0.53 16 12 C -0.52 -15.22 9.11 -34.44 -0.31 -15.53 16 13 H 0.06 1.67 7.74 -52.49 -0.41 1.26 16 14 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 15 N -0.89 -27.08 13.29 55.43 0.74 -26.34 16 16 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 20 N -0.22 -3.85 11.75 33.41 0.39 -3.46 16 21 N -0.24 -3.23 3.43 -6.85 -0.02 -3.25 16 22 C 0.13 1.45 5.96 -83.61 -0.50 0.95 16 23 C -0.12 -1.02 8.17 -39.40 -0.32 -1.34 16 24 C -0.11 -0.67 10.04 -39.61 -0.40 -1.07 16 25 C -0.11 -0.70 10.04 -39.55 -0.40 -1.10 16 26 C -0.10 -0.80 10.04 -39.61 -0.40 -1.20 16 27 C -0.10 -1.01 9.77 -39.40 -0.38 -1.39 16 28 H 0.07 0.44 7.40 -51.93 -0.38 0.05 16 29 H 0.06 0.31 8.14 -51.92 -0.42 -0.11 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.60 6.69 -51.93 -0.35 0.25 16 32 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.38 6.04 -51.93 -0.31 0.06 16 35 H 0.17 2.00 7.54 -52.48 -0.40 1.60 16 36 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 37 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 38 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 41 H 0.14 0.99 4.59 -52.49 -0.24 0.75 16 42 H 0.13 0.49 8.06 -52.48 -0.42 0.07 16 43 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 44 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 45 H 0.14 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 381.98 15.07 5.76 5.76 Total: -1.00 -34.48 381.98 -8.69 -43.16 By element: Atomic # 1 Polarization: 2.87 SS G_CDS: -6.30 Total: -3.43 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: -3.49 Total: -9.92 kcal Atomic # 7 Polarization: -34.16 SS G_CDS: 1.11 Total: -33.05 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: -0.74 Total: -19.38 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.48 -8.69 -43.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178892305.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.481 kcal (2) G-P(sol) polarization free energy of solvation -34.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds