Wall clock time and date at job start Tue Mar 31 2020 15:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47147 * 2 1 4 4 C 1.50700 * 109.46829 * 120.00003 * 2 1 3 5 5 C 1.35338 * 126.43105 * 322.12888 * 4 2 1 6 6 C 1.41573 * 105.55699 * 180.24782 * 5 4 2 7 7 C 1.47544 * 126.45106 * 179.72037 * 6 5 4 8 8 O 1.21499 * 119.99370 * 0.02562 * 7 6 5 9 9 O 1.34734 * 120.00367 * 180.02562 * 7 6 5 10 10 C 1.45193 * 117.00448 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47549 * 179.97438 * 10 9 7 12 12 C 1.50698 * 109.47141 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99948 * 359.97438 * 12 11 10 14 14 C 1.37880 * 119.99826 * 180.02562 * 12 11 10 15 15 N 1.31510 * 120.00029 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99858 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47135 * 89.99759 * 16 14 12 18 18 H 1.48506 * 109.47059 * 209.99466 * 16 14 12 19 19 H 1.48498 * 109.47058 * 329.99565 * 16 14 12 20 20 N 1.31904 * 107.10458 * 359.74407 * 6 5 4 21 21 N 1.28482 * 110.10717 * 359.97438 * 20 6 5 22 22 C 1.40113 * 124.95091 * 180.02562 * 21 20 6 23 23 C 1.38861 * 120.06481 * 223.25310 * 22 21 20 24 24 C 1.38110 * 119.92585 * 179.97438 * 23 22 21 25 25 C 1.38279 * 120.07216 * 0.02562 * 24 23 22 26 26 C 1.38282 * 120.13661 * 359.97438 * 25 24 23 27 27 C 1.38108 * 120.07144 * 359.97438 * 26 25 24 28 28 H 1.08995 * 109.47619 * 300.00188 * 1 2 3 29 29 H 1.09008 * 109.46595 * 60.00684 * 1 2 3 30 30 H 1.09000 * 109.46877 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47125 * 239.99415 * 2 1 3 32 32 H 1.09002 * 109.46992 * 293.43871 * 3 2 1 33 33 H 1.08998 * 109.47433 * 53.43956 * 3 2 1 34 34 H 1.09000 * 109.47389 * 173.44595 * 3 2 1 35 35 H 1.08004 * 127.21917 * 359.97438 * 5 4 2 36 36 H 1.09004 * 109.46908 * 300.00085 * 10 9 7 37 37 H 1.08996 * 109.47193 * 59.99415 * 10 9 7 38 38 H 1.08993 * 109.46868 * 299.99897 * 11 10 9 39 39 H 1.09000 * 109.46706 * 59.99756 * 11 10 9 40 40 H 0.97004 * 120.00156 * 179.97438 * 15 14 12 41 41 H 1.07996 * 120.03350 * 0.25952 * 23 22 21 42 42 H 1.08003 * 119.96154 * 180.02562 * 24 23 22 43 43 H 1.08002 * 119.93135 * 179.97438 * 25 24 23 44 44 H 1.08002 * 119.96662 * 179.97438 * 26 25 24 45 45 H 1.07997 * 120.03710 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.4897 -0.6536 2.4690 6 6 2.3094 -1.4744 3.2806 7 6 2.1352 -1.7348 4.7224 8 8 1.2139 -1.2212 5.3254 9 8 2.9976 -2.5422 5.3703 10 6 2.7647 -2.7537 6.7877 11 6 3.8367 -3.6916 7.3464 12 6 3.5952 -3.9106 8.8177 13 1 2.7609 -3.4287 9.3056 14 6 4.4401 -4.7254 9.5412 15 7 5.4563 -5.3117 8.9472 16 14 4.1412 -4.9963 11.3651 17 1 3.2522 -6.1710 11.5519 18 1 5.4368 -5.2425 12.0478 19 1 3.4971 -3.7907 11.9456 20 7 3.2587 -1.9621 2.5054 21 7 3.1125 -1.5313 1.3038 22 6 3.9488 -1.8558 0.2275 23 6 4.3537 -0.8685 -0.6611 24 6 5.1785 -1.1914 -1.7207 25 6 5.6006 -2.4963 -1.8977 26 6 5.1990 -3.4816 -1.0145 27 6 4.3752 -3.1650 0.0478 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.7757 1.9212 -0.9429 33 1 1.5840 1.9891 0.8254 34 1 3.1237 1.4447 0.1173 35 1 0.6173 -0.0954 2.7751 36 1 2.8096 -1.7980 7.3099 37 1 1.7809 -3.2004 6.9316 38 1 3.7913 -4.6472 6.8242 39 1 4.8206 -3.2452 7.2025 40 1 6.0510 -5.8847 9.4562 41 1 4.0277 0.1515 -0.5210 42 1 5.4941 -0.4239 -2.4119 43 1 6.2452 -2.7463 -2.7273 44 1 5.5300 -4.5000 -1.1555 45 1 4.0616 -3.9351 0.7369 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178892305.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:33 Heat of formation + Delta-G solvation = -9.362972 kcal Electronic energy + Delta-G solvation = -26828.406878 eV Core-core repulsion = 23004.740576 eV Total energy + Delta-G solvation = -3823.666302 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.21978 -41.33191 -40.07061 -37.77882 -36.91541 -35.49047 -34.82180 -32.42926 -32.11456 -30.90546 -30.55828 -28.10956 -27.47360 -25.89101 -24.58641 -23.59868 -23.09072 -22.77649 -21.65509 -20.91770 -19.16049 -18.75391 -18.12938 -17.83561 -17.71115 -17.24406 -17.14727 -16.52692 -15.96045 -15.58038 -15.27171 -15.14347 -14.99694 -14.77118 -14.57365 -14.45336 -14.36922 -13.96864 -13.78260 -13.21328 -13.09518 -13.02429 -12.75506 -12.67081 -12.63763 -12.59365 -12.30799 -12.10933 -12.00634 -11.93534 -11.86640 -11.63977 -11.55776 -11.45078 -11.06903 -10.64241 -10.20484 -10.08136 -9.61526 -8.29038 -6.43371 -0.33251 0.25359 0.28162 0.95165 1.10431 1.39422 1.42345 1.53474 1.70690 1.91476 2.38429 2.59852 3.04973 3.18933 3.29727 3.69330 3.77493 3.82385 4.05765 4.12625 4.15376 4.16442 4.19371 4.23997 4.33691 4.36262 4.40044 4.50538 4.58964 4.63251 4.81988 4.87537 4.96576 4.98293 5.05018 5.11740 5.14426 5.20967 5.29391 5.37269 5.38203 5.40174 5.40916 5.44439 5.64027 5.69047 5.93437 6.02196 6.44137 6.69710 6.74824 7.26484 8.84133 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014730 B = 0.002541 C = 0.002221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.390811 B =11016.470873 C =12606.024685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.023 4.023 3 C -0.146 4.146 4 C 0.037 3.963 5 C -0.172 4.172 6 C -0.021 4.021 7 C 0.548 3.452 8 O -0.522 6.522 9 O -0.357 6.357 10 C 0.089 3.911 11 C 0.032 3.968 12 C -0.550 4.550 13 H 0.069 0.931 14 C 0.004 3.996 15 N -0.929 5.929 16 Si 0.979 3.021 17 H -0.269 1.269 18 H -0.278 1.278 19 H -0.261 1.261 20 N -0.262 5.262 21 N -0.227 5.227 22 C 0.088 3.912 23 C -0.119 4.119 24 C -0.096 4.096 25 C -0.099 4.099 26 C -0.106 4.106 27 C -0.120 4.120 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.049 0.951 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.062 0.938 34 H 0.053 0.947 35 H 0.183 0.817 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.003 0.997 39 H 0.003 0.997 40 H 0.268 0.732 41 H 0.151 0.849 42 H 0.172 0.828 43 H 0.166 0.834 44 H 0.153 0.847 45 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.312 12.540 -31.213 33.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.043 4.043 3 C -0.204 4.204 4 C -0.085 4.085 5 C -0.198 4.198 6 C -0.177 4.177 7 C 0.391 3.609 8 O -0.410 6.410 9 O -0.272 6.272 10 C 0.016 3.984 11 C -0.005 4.005 12 C -0.588 4.588 13 H 0.087 0.913 14 C -0.195 4.195 15 N -0.568 5.568 16 Si 0.802 3.198 17 H -0.194 1.194 18 H -0.203 1.203 19 H -0.185 1.185 20 N -0.097 5.097 21 N -0.011 5.011 22 C 0.000 4.000 23 C -0.138 4.138 24 C -0.114 4.114 25 C -0.117 4.117 26 C -0.125 4.125 27 C -0.140 4.140 28 H 0.082 0.918 29 H 0.110 0.890 30 H 0.069 0.931 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.200 0.800 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.022 0.978 39 H 0.021 0.979 40 H 0.077 0.923 41 H 0.168 0.832 42 H 0.190 0.810 43 H 0.184 0.816 44 H 0.170 0.830 45 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -3.453 11.833 -30.952 33.316 hybrid contribution -0.614 -0.286 1.773 1.897 sum -4.067 11.547 -29.180 31.644 Atomic orbital electron populations 1.21867 0.91758 1.02462 1.03979 1.19998 0.97667 0.96001 0.90643 1.21987 1.00785 0.93196 1.04396 1.22315 0.89654 0.97596 0.98924 1.21668 1.03473 1.04036 0.90666 1.20849 0.99143 1.06225 0.91530 1.19962 0.79162 0.75543 0.86206 1.90783 1.32296 1.49871 1.68078 1.86661 1.52355 1.61144 1.27056 1.23315 1.00629 1.00259 0.74221 1.18974 0.92946 0.93267 0.95304 1.21363 1.13557 1.30043 0.93792 0.91321 1.26043 0.94288 0.94723 1.04447 1.70118 1.16592 1.31419 1.38670 0.85249 0.77884 0.79097 0.77610 1.19385 1.20285 1.18526 1.73850 1.23104 1.21198 0.91557 1.43116 1.20506 1.32393 1.05101 1.17994 0.97932 0.95741 0.88320 1.21545 0.98441 0.98781 0.95055 1.21512 0.95292 0.98002 0.96637 1.21811 0.98286 0.92454 0.99190 1.21414 0.96021 1.01905 0.93131 1.21209 0.99323 0.94161 0.99315 0.91754 0.89003 0.93148 0.88520 0.88510 0.91859 0.92804 0.79958 0.91582 0.91564 0.97843 0.97868 0.92283 0.83195 0.81043 0.81621 0.82953 0.86933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 8.82 71.98 0.64 -0.95 16 2 C -0.02 -0.31 2.39 -11.54 -0.03 -0.34 16 3 C -0.15 -1.39 8.75 71.98 0.63 -0.76 16 4 C 0.04 0.86 5.62 41.26 0.23 1.09 16 5 C -0.17 -4.87 9.99 22.42 0.22 -4.65 16 6 C -0.02 -0.78 7.16 42.41 0.30 -0.48 16 7 C 0.55 23.84 7.96 70.28 0.56 24.40 16 8 O -0.52 -23.40 16.71 19.84 0.33 -23.07 16 9 O -0.36 -17.33 10.23 -56.44 -0.58 -17.90 16 10 C 0.09 4.42 5.41 71.98 0.39 4.81 16 11 C 0.03 1.88 5.35 29.85 0.16 2.04 16 12 C -0.55 -32.70 9.11 25.60 0.23 -32.47 16 13 H 0.07 3.87 7.74 -2.91 -0.02 3.85 16 14 C 0.00 0.22 5.46 84.66 0.46 0.68 16 15 N -0.93 -57.96 13.29 21.45 0.28 -57.67 16 16 Si 0.98 45.07 29.54 68.60 2.03 47.10 16 17 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 18 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 19 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 20 N -0.26 -9.66 11.75 -48.21 -0.57 -10.23 16 21 N -0.23 -6.42 3.43 -175.58 -0.60 -7.02 16 22 C 0.09 2.00 5.96 38.11 0.23 2.23 16 23 C -0.12 -1.74 8.17 22.39 0.18 -1.55 16 24 C -0.10 -0.85 10.04 22.25 0.22 -0.63 16 25 C -0.10 -0.90 10.04 22.29 0.22 -0.68 16 26 C -0.11 -1.52 10.04 22.25 0.22 -1.30 16 27 C -0.12 -2.65 9.77 22.39 0.22 -2.44 16 28 H 0.06 0.74 7.40 -2.39 -0.02 0.73 16 29 H 0.09 0.56 8.14 -2.38 -0.02 0.55 16 30 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.10 1.10 6.69 -2.39 -0.02 1.08 16 32 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.05 0.56 6.04 -2.39 -0.01 0.55 16 35 H 0.18 4.40 7.54 -2.91 -0.02 4.38 16 36 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 37 H 0.07 3.20 8.14 -2.39 -0.02 3.18 16 38 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 39 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 40 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 41 H 0.15 1.75 4.59 -2.91 -0.01 1.73 16 42 H 0.17 0.29 8.06 -2.91 -0.02 0.26 16 43 H 0.17 0.39 8.06 -2.91 -0.02 0.37 16 44 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 45 H 0.11 2.94 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -79.30 381.98 6.99 -72.31 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: 1.00 Total: 7.46 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: 5.10 Total: -10.97 kcal Atomic # 7 Polarization: -74.03 SS G_CDS: -0.88 Total: -74.92 kcal Atomic # 8 Polarization: -40.73 SS G_CDS: -0.25 Total: -40.98 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -79.30 6.99 -72.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178892305.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.942 kcal (2) G-P(sol) polarization free energy of solvation -79.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds