Wall clock time and date at job start Tue Mar 31 2020 16:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47141 * 2 1 4 4 C 1.53001 * 109.46850 * 179.97438 * 3 2 1 5 5 C 1.50698 * 109.46765 * 179.97438 * 4 3 2 6 6 O 1.21280 * 120.00404 * 0.02562 * 5 4 3 7 7 N 1.34776 * 119.99985 * 179.97438 * 5 4 3 8 8 C 1.47603 * 122.43109 * 0.02877 * 7 5 4 9 9 S 1.84067 * 102.64015 * 204.78823 * 8 7 5 10 10 C 1.84213 * 93.90938 * 326.56242 * 9 8 7 11 11 C 1.45503 * 122.43393 * 180.02562 * 7 5 4 12 12 H 1.09000 * 108.75342 * 299.76008 * 11 7 5 13 13 C 1.50709 * 108.74998 * 57.97685 * 11 7 5 14 14 O 1.21282 * 119.99977 * 0.02562 * 13 11 7 15 15 N 1.34777 * 119.99692 * 180.02562 * 13 11 7 16 16 C 1.46497 * 120.00015 * 180.02562 * 15 13 11 17 17 H 1.09003 * 109.46733 * 325.00143 * 16 15 13 18 18 C 1.50694 * 109.47115 * 204.99781 * 16 15 13 19 19 H 1.08000 * 120.00563 * 359.97438 * 18 16 15 20 20 C 1.37885 * 119.99902 * 180.02562 * 18 16 15 21 21 N 1.31516 * 119.99913 * 359.97438 * 20 18 16 22 22 Si 1.86798 * 119.99766 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47353 * 269.99586 * 22 20 18 24 24 H 1.48501 * 109.47293 * 30.00037 * 22 20 18 25 25 H 1.48504 * 109.46680 * 149.99835 * 22 20 18 26 26 C 1.53000 * 109.47145 * 84.99707 * 16 15 13 27 27 C 1.52999 * 109.47339 * 295.00254 * 26 16 15 28 28 H 1.09005 * 109.46806 * 59.99955 * 1 2 3 29 29 H 1.09000 * 109.46799 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47066 * 300.00190 * 1 2 3 31 31 H 1.09002 * 109.47587 * 239.99741 * 2 1 3 32 32 H 1.09005 * 109.46806 * 120.00045 * 2 1 3 33 33 H 1.08992 * 109.47210 * 60.00001 * 3 2 1 34 34 H 1.08999 * 109.46712 * 299.99417 * 3 2 1 35 35 H 1.09002 * 109.47016 * 60.00018 * 4 3 2 36 36 H 1.08997 * 109.47396 * 299.99869 * 4 3 2 37 37 H 1.09001 * 110.77665 * 323.07548 * 8 7 5 38 38 H 1.09005 * 110.77877 * 86.49796 * 8 7 5 39 39 H 1.09004 * 111.05087 * 274.24286 * 10 9 8 40 40 H 1.08999 * 111.05263 * 150.27618 * 10 9 8 41 41 H 0.97005 * 120.00104 * 359.97438 * 15 13 11 42 42 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 43 43 H 1.08995 * 109.47417 * 54.99847 * 26 16 15 44 44 H 1.09002 * 109.47354 * 175.00441 * 26 16 15 45 45 H 1.09008 * 109.46826 * 300.00212 * 27 26 16 46 46 H 1.09001 * 109.47268 * 59.99832 * 27 26 16 47 47 H 1.08999 * 109.47792 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 0.0006 5 6 4.0724 2.8633 0.0000 6 8 3.2843 3.7851 -0.0004 7 7 5.3974 3.1096 0.0009 8 6 6.4033 2.0294 0.0020 9 16 7.8706 2.8460 0.7559 10 6 7.4851 4.4937 0.0279 11 6 5.9403 4.4595 0.0009 12 1 5.5963 4.9755 -0.8955 13 6 5.4180 5.1917 1.2103 14 8 4.6708 4.6302 1.9832 15 7 5.7812 6.4704 1.4328 16 6 5.2740 7.1819 2.6086 17 1 4.2542 6.8583 2.8171 18 6 5.2859 8.6651 2.3420 19 1 5.6366 9.0403 1.3919 20 6 4.8499 9.5433 3.3115 21 7 4.4233 9.0865 4.4686 22 14 4.8654 11.3818 2.9812 23 1 6.1702 11.9500 3.4053 24 1 4.6675 11.6257 1.5298 25 1 3.7706 12.0312 3.7461 26 6 6.1636 6.8734 3.8145 27 6 6.0541 5.3874 4.1622 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8935 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 1.6768 1.9564 0.8899 34 1 1.6768 1.9563 -0.8900 35 1 3.9337 0.9285 -0.8891 36 1 3.9330 0.9288 0.8908 37 1 6.0702 1.1913 0.6142 38 1 6.6221 1.7037 -1.0150 39 1 7.8928 4.5818 -0.9792 40 1 7.8478 5.2987 0.6670 41 1 6.3791 6.9193 0.8147 42 1 4.1170 9.7044 5.1508 43 1 7.1988 7.1147 3.5736 44 1 5.8402 7.4707 4.6670 45 1 5.0187 5.1460 4.4031 46 1 6.3775 4.7900 3.3098 47 1 6.6875 5.1676 5.0216 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183840068.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:29 Heat of formation + Delta-G solvation = -97.926012 kcal Electronic energy + Delta-G solvation = -27246.525819 eV Core-core repulsion = 23554.463087 eV Total energy + Delta-G solvation = -3692.062732 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.69867 -40.06800 -37.51622 -36.65893 -36.21212 -34.43818 -33.35958 -32.22518 -30.93294 -28.90389 -28.31253 -26.19478 -25.28340 -24.28745 -22.45307 -21.80373 -21.12933 -20.40886 -19.09364 -18.58278 -17.92036 -17.75131 -17.11947 -16.86986 -16.40804 -16.17851 -15.89001 -15.73196 -14.90340 -14.75893 -14.64495 -14.60191 -14.44858 -14.28345 -14.01519 -13.58013 -13.55947 -13.35823 -13.19205 -13.11547 -13.09047 -12.91137 -12.67281 -12.21586 -12.19018 -12.08819 -12.06552 -11.87988 -11.63264 -11.52893 -11.45755 -11.07132 -10.90398 -10.78849 -10.54873 -9.80593 -9.60010 -8.88241 -8.17249 -6.35075 0.58032 0.95981 1.42057 1.43579 1.50398 1.54246 1.76026 1.87149 2.35046 2.60452 3.11673 3.16866 3.56012 3.77864 3.89694 4.00517 4.09927 4.12317 4.27399 4.31529 4.38348 4.41861 4.46823 4.48240 4.55728 4.59254 4.72267 4.75175 4.91850 4.99592 5.03373 5.07178 5.10982 5.24237 5.28635 5.38257 5.42479 5.49650 5.54893 5.62110 5.77921 5.92661 6.15089 6.16067 6.73568 6.96838 7.16433 7.32692 7.61058 8.88067 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012344 B = 0.003689 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.689879 B = 7587.467293 C = 8931.728536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.115 4.115 3 C -0.105 4.105 4 C -0.124 4.124 5 C 0.521 3.479 6 O -0.567 6.567 7 N -0.605 5.605 8 C 0.160 3.840 9 S -0.295 6.295 10 C -0.053 4.053 11 C 0.116 3.884 12 H 0.116 0.884 13 C 0.492 3.508 14 O -0.562 6.562 15 N -0.707 5.707 16 C 0.286 3.714 17 H -0.014 1.014 18 C -0.548 4.548 19 H 0.072 0.928 20 C 0.013 3.987 21 N -0.916 5.916 22 Si 0.971 3.029 23 H -0.268 1.268 24 H -0.265 1.265 25 H -0.288 1.288 26 C -0.116 4.116 27 C -0.118 4.118 28 H 0.051 0.949 29 H 0.069 0.931 30 H 0.040 0.960 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.033 0.967 34 H 0.056 0.944 35 H 0.134 0.866 36 H 0.108 0.892 37 H 0.130 0.870 38 H 0.141 0.859 39 H 0.153 0.847 40 H 0.120 0.880 41 H 0.402 0.598 42 H 0.264 0.736 43 H 0.043 0.957 44 H 0.068 0.932 45 H 0.016 0.984 46 H 0.048 0.952 47 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.881 -18.662 -14.356 24.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.153 4.153 3 C -0.143 4.143 4 C -0.163 4.163 5 C 0.311 3.689 6 O -0.444 6.444 7 N -0.341 5.341 8 C -0.072 4.072 9 S -0.070 6.070 10 C -0.201 4.201 11 C 0.006 3.994 12 H 0.134 0.866 13 C 0.277 3.723 14 O -0.440 6.440 15 N -0.357 5.357 16 C 0.182 3.818 17 H 0.004 0.996 18 C -0.586 4.586 19 H 0.090 0.910 20 C -0.187 4.187 21 N -0.554 5.554 22 Si 0.796 3.204 23 H -0.193 1.193 24 H -0.189 1.189 25 H -0.214 1.214 26 C -0.155 4.155 27 C -0.176 4.176 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.059 0.941 31 H 0.103 0.897 32 H 0.088 0.912 33 H 0.052 0.948 34 H 0.074 0.926 35 H 0.152 0.848 36 H 0.126 0.874 37 H 0.148 0.852 38 H 0.159 0.841 39 H 0.171 0.829 40 H 0.139 0.861 41 H 0.237 0.763 42 H 0.073 0.927 43 H 0.062 0.938 44 H 0.087 0.913 45 H 0.035 0.965 46 H 0.067 0.933 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 5.726 -18.937 -12.889 23.612 hybrid contribution -1.063 2.030 -0.304 2.312 sum 4.663 -16.907 -13.193 21.946 Atomic orbital electron populations 1.21799 0.96065 1.02179 1.01349 1.21501 0.95877 0.94562 1.03325 1.21347 0.93480 0.98036 1.01432 1.21753 0.97354 0.90595 1.06607 1.21395 0.80218 0.93300 0.74014 1.90744 1.55533 1.48533 1.49601 1.48346 1.06316 1.04461 1.75013 1.24653 0.85119 0.91787 1.05612 1.88594 1.36512 1.10956 1.70897 1.24660 0.91145 0.96879 1.07451 1.21233 0.95179 0.85396 0.97570 0.86604 1.21143 0.81150 0.82645 0.87372 1.90656 1.36911 1.67794 1.48629 1.46165 1.49549 1.12129 1.27894 1.18244 0.91455 0.90064 0.82003 0.99644 1.21591 1.44496 0.91119 1.01394 0.90975 1.25811 0.94237 1.04013 0.94602 1.70069 1.42878 1.36341 1.06156 0.85358 0.77881 0.78738 0.78434 1.19334 1.18927 1.21422 1.21738 0.98305 0.94655 1.00820 1.21630 0.98773 0.97414 0.99745 0.92937 0.91184 0.94066 0.89665 0.91194 0.94772 0.92561 0.84776 0.87400 0.85169 0.84150 0.82881 0.86126 0.76347 0.92682 0.93791 0.91316 0.96495 0.93340 0.93858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.53 9.91 71.98 0.71 -1.81 16 2 C -0.12 -1.74 5.93 30.60 0.18 -1.56 16 3 C -0.10 -2.35 4.50 30.60 0.14 -2.21 16 4 C -0.12 -2.35 4.49 29.85 0.13 -2.21 16 5 C 0.52 15.64 6.73 87.66 0.59 16.23 16 6 O -0.57 -23.97 14.44 16.90 0.24 -23.72 16 7 N -0.61 -15.26 2.80 -807.49 -2.26 -17.53 16 8 C 0.16 2.51 7.21 127.56 0.92 3.43 16 9 S -0.30 -6.28 23.43 -56.49 -1.32 -7.60 16 10 C -0.05 -1.04 6.94 72.51 0.50 -0.53 16 11 C 0.12 3.21 2.91 44.96 0.13 3.34 16 12 H 0.12 2.99 8.14 -2.39 -0.02 2.97 16 13 C 0.49 19.98 5.11 87.66 0.45 20.43 16 14 O -0.56 -28.11 11.52 16.90 0.19 -27.91 16 15 N -0.71 -29.71 4.60 -446.10 -2.05 -31.76 16 16 C 0.29 15.19 2.24 44.24 0.10 15.29 16 17 H -0.01 -0.94 7.58 -2.39 -0.02 -0.95 16 18 C -0.55 -29.74 8.73 25.60 0.22 -29.52 16 19 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 20 C 0.01 0.73 5.29 84.66 0.45 1.18 16 21 N -0.92 -54.11 11.29 21.45 0.24 -53.87 16 22 Si 0.97 43.08 29.54 68.60 2.03 45.11 16 23 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 24 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 25 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 26 C -0.12 -5.89 5.45 30.59 0.17 -5.73 16 27 C -0.12 -5.59 8.52 71.98 0.61 -4.98 16 28 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 29 H 0.07 0.88 8.14 -2.39 -0.02 0.87 16 30 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.08 0.90 8.14 -2.39 -0.02 0.89 16 32 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 33 H 0.03 1.01 8.10 -2.39 -0.02 0.99 16 34 H 0.06 1.38 8.10 -2.39 -0.02 1.36 16 35 H 0.13 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.11 1.76 7.63 -2.39 -0.02 1.74 16 37 H 0.13 1.63 7.13 -2.39 -0.02 1.61 16 38 H 0.14 1.09 8.14 -2.38 -0.02 1.07 16 39 H 0.15 1.71 8.14 -2.38 -0.02 1.69 16 40 H 0.12 2.61 7.01 -2.39 -0.02 2.59 16 41 H 0.40 13.90 7.95 -92.70 -0.74 13.16 16 42 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 43 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.07 3.92 5.95 -2.39 -0.01 3.91 16 45 H 0.02 0.85 7.85 -2.38 -0.02 0.84 16 46 H 0.05 2.20 5.65 -2.39 -0.01 2.19 16 47 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -81.63 381.47 2.60 -79.03 By element: Atomic # 1 Polarization: 26.69 SS G_CDS: 0.22 Total: 26.91 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: 5.31 Total: 11.34 kcal Atomic # 7 Polarization: -99.08 SS G_CDS: -4.07 Total: -103.15 kcal Atomic # 8 Polarization: -52.07 SS G_CDS: 0.44 Total: -51.63 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Atomic # 16 Polarization: -6.28 SS G_CDS: -1.32 Total: -7.60 kcal Total: -81.63 2.60 -79.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183840068.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.898 kcal (2) G-P(sol) polarization free energy of solvation -81.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds