Wall clock time and date at job start Tue Mar 31 2020 16:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47356 * 2 1 4 4 C 1.52995 * 109.47238 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.47340 * 180.02562 * 4 3 2 6 6 O 1.21280 * 119.99945 * 0.02562 * 5 4 3 7 7 N 1.34781 * 120.00263 * 180.02562 * 5 4 3 8 8 C 1.47057 * 122.49526 * 4.23242 * 7 5 4 9 9 S 1.83561 * 104.97907 * 175.98181 * 8 7 5 10 10 C 1.84247 * 94.86089 * 341.48835 * 9 8 7 11 11 C 1.46133 * 122.50086 * 184.25437 * 7 5 4 12 12 H 1.09001 * 109.42874 * 90.71808 * 11 7 5 13 13 C 1.50706 * 109.46788 * 330.75323 * 11 7 5 14 14 O 1.21276 * 119.99894 * 136.64852 * 13 11 7 15 15 N 1.34776 * 119.99744 * 316.92060 * 13 11 7 16 16 C 1.46495 * 119.99899 * 179.73100 * 15 13 11 17 17 H 1.09006 * 109.47089 * 324.99578 * 16 15 13 18 18 C 1.50700 * 109.47329 * 204.99822 * 16 15 13 19 19 H 1.08006 * 119.99577 * 0.02562 * 18 16 15 20 20 C 1.37874 * 120.00363 * 179.97438 * 18 16 15 21 21 N 1.31519 * 119.99945 * 359.97438 * 20 18 16 22 22 Si 1.86798 * 119.99956 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47605 * 90.00022 * 22 20 18 24 24 H 1.48510 * 109.46714 * 209.99958 * 22 20 18 25 25 H 1.48494 * 109.47156 * 329.99523 * 22 20 18 26 26 C 1.52996 * 109.47443 * 84.99786 * 16 15 13 27 27 C 1.53001 * 109.47117 * 295.00016 * 26 16 15 28 28 H 1.08997 * 109.47129 * 59.99366 * 1 2 3 29 29 H 1.08995 * 109.47558 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46497 * 299.99663 * 1 2 3 31 31 H 1.09004 * 109.46497 * 240.00337 * 2 1 3 32 32 H 1.08997 * 109.47129 * 120.00634 * 2 1 3 33 33 H 1.09002 * 109.46771 * 60.00216 * 3 2 1 34 34 H 1.08997 * 109.47520 * 300.00395 * 3 2 1 35 35 H 1.09002 * 109.47216 * 60.00301 * 4 3 2 36 36 H 1.09002 * 109.47400 * 300.00221 * 4 3 2 37 37 H 1.08991 * 110.33946 * 57.10542 * 8 7 5 38 38 H 1.09004 * 110.42627 * 294.89983 * 8 7 5 39 39 H 1.08999 * 111.35090 * 275.51128 * 10 9 8 40 40 H 1.08999 * 111.34917 * 150.78161 * 10 9 8 41 41 H 0.97005 * 120.00301 * 359.72433 * 15 13 11 42 42 H 0.96994 * 119.99838 * 179.97438 * 21 20 18 43 43 H 1.09004 * 109.47235 * 55.00209 * 26 16 15 44 44 H 1.09006 * 109.47691 * 175.00173 * 26 16 15 45 45 H 1.08995 * 109.47258 * 299.99940 * 27 26 16 46 46 H 1.08997 * 109.46888 * 60.00148 * 27 26 16 47 47 H 1.09006 * 109.47028 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0724 2.8631 0.0000 6 8 3.2844 3.7850 0.0013 7 7 5.3976 3.1094 -0.0009 8 6 6.4002 2.0377 -0.0941 9 16 8.0156 2.9054 -0.1782 10 6 7.2960 4.5274 -0.6739 11 6 5.9450 4.4612 0.0910 12 1 6.1076 4.7161 1.1383 13 6 4.9739 5.4390 -0.5189 14 8 4.7431 6.4915 0.0377 15 7 4.3578 5.1414 -1.6800 16 6 3.4093 6.0892 -2.2699 17 1 2.8637 6.5991 -1.4758 18 6 2.4375 5.3458 -3.1497 19 1 2.5181 4.2742 -3.2581 20 6 1.4449 6.0333 -3.8152 21 7 1.3458 7.3380 -3.6819 22 14 0.2399 5.1116 -4.9051 23 1 -0.9349 4.6916 -4.0997 24 1 -0.2080 5.9989 -6.0085 25 1 0.9048 3.9117 -5.4738 26 6 4.1709 7.1184 -3.1074 27 6 5.0663 7.9576 -2.1936 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.6768 1.9562 0.8900 34 1 1.6768 1.9563 -0.8899 35 1 3.9330 0.9287 -0.8909 36 1 3.9338 0.9284 0.8891 37 1 6.2403 1.4467 -0.9958 38 1 6.3583 1.3997 0.7887 39 1 7.1398 4.5796 -1.7513 40 1 7.9098 5.3574 -0.3239 41 1 4.5424 4.2995 -2.1252 42 1 0.6477 7.8217 -4.1504 43 1 4.7859 6.6031 -3.8452 44 1 3.4607 7.7693 -3.6174 45 1 4.4514 8.4729 -1.4559 46 1 5.7766 7.3068 -1.6838 47 1 5.6093 8.6905 -2.7904 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183840085.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:33 Heat of formation + Delta-G solvation = -69.879649 kcal Electronic energy + Delta-G solvation = -27952.548433 eV Core-core repulsion = 24261.701882 eV Total energy + Delta-G solvation = -3690.846551 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.59005 -38.45050 -36.35699 -35.28802 -34.93662 -32.36042 -31.77733 -30.63431 -30.05908 -27.55046 -26.75165 -25.22040 -23.63443 -22.84146 -21.33963 -20.54286 -19.51657 -19.03353 -17.67873 -17.09708 -16.70523 -16.21645 -15.79573 -15.39354 -15.04581 -14.76431 -14.56617 -14.23972 -13.97301 -13.74697 -13.72610 -13.27043 -12.89460 -12.84846 -12.64502 -12.47923 -12.32006 -12.21975 -11.88293 -11.40918 -11.36067 -11.22582 -11.20490 -11.01182 -10.92347 -10.84309 -10.77276 -10.58122 -10.27855 -10.11466 -9.62268 -9.59203 -9.21763 -8.96098 -8.78600 -8.41098 -8.09164 -7.65284 -6.04325 -4.11278 1.34858 1.73276 2.52001 2.68124 3.27646 3.33486 3.34736 3.40331 4.06461 4.27132 4.42205 4.58563 4.72318 4.77812 4.82016 4.89511 4.94006 5.15175 5.20318 5.25226 5.27529 5.37170 5.42386 5.56703 5.71489 5.78736 5.80523 5.88195 5.99548 6.15953 6.25281 6.41029 6.44832 6.46121 6.68189 7.04814 7.08197 7.25550 7.41727 7.56082 7.68101 7.79249 8.01846 8.17722 8.25901 8.75283 8.85777 9.18433 9.54168 11.01551 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.008192 B = 0.006118 C = 0.003877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3417.067721 B = 4575.373141 C = 7220.272795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C -0.109 4.109 4 C -0.130 4.130 5 C 0.507 3.493 6 O -0.470 6.470 7 N -0.625 5.625 8 C 0.155 3.845 9 S -0.266 6.266 10 C -0.063 4.063 11 C 0.111 3.889 12 H 0.109 0.891 13 C 0.525 3.475 14 O -0.543 6.543 15 N -0.685 5.685 16 C 0.278 3.722 17 H 0.049 0.951 18 C -0.519 4.519 19 H 0.056 0.944 20 C 0.065 3.935 21 N -0.885 5.885 22 Si 0.897 3.103 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.275 1.275 26 C -0.129 4.129 27 C -0.136 4.136 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.102 0.898 39 H 0.107 0.893 40 H 0.129 0.871 41 H 0.380 0.620 42 H 0.263 0.737 43 H 0.028 0.972 44 H 0.099 0.901 45 H 0.050 0.950 46 H 0.035 0.965 47 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.162 -14.907 6.295 18.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.147 4.147 4 C -0.170 4.170 5 C 0.294 3.706 6 O -0.339 6.339 7 N -0.366 5.366 8 C -0.079 4.079 9 S -0.040 6.040 10 C -0.213 4.213 11 C 0.002 3.998 12 H 0.127 0.873 13 C 0.307 3.693 14 O -0.421 6.421 15 N -0.331 5.331 16 C 0.176 3.824 17 H 0.067 0.933 18 C -0.558 4.558 19 H 0.074 0.926 20 C -0.137 4.137 21 N -0.523 5.523 22 Si 0.725 3.275 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.200 1.200 26 C -0.168 4.168 27 C -0.193 4.193 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.116 0.884 38 H 0.120 0.880 39 H 0.126 0.874 40 H 0.147 0.853 41 H 0.211 0.789 42 H 0.073 0.927 43 H 0.047 0.953 44 H 0.117 0.883 45 H 0.069 0.931 46 H 0.054 0.946 47 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 9.504 -13.842 6.813 18.120 hybrid contribution -1.451 -0.666 -1.007 1.888 sum 8.054 -14.508 5.806 17.580 Atomic orbital electron populations 1.21762 0.95705 1.01255 1.02379 1.21512 0.96227 0.96587 1.01563 1.21428 0.92208 0.96598 1.04503 1.21671 0.98547 0.92882 1.03925 1.20834 0.80337 0.92660 0.76795 1.90984 1.53138 1.45289 1.44522 1.48584 1.05993 1.04941 1.77081 1.23884 0.86440 0.92014 1.05570 1.88163 1.12666 1.12086 1.91054 1.24771 0.95853 0.96327 1.04303 1.22372 0.93019 0.82779 1.01610 0.87349 1.19504 0.81349 0.86389 0.82105 1.90692 1.64071 1.25399 1.61982 1.46245 1.43017 1.21725 1.22112 1.18682 0.85116 0.86189 0.92366 0.93340 1.21141 1.13262 0.93662 1.27722 0.92576 1.24849 0.97332 0.94874 0.96654 1.69891 1.33174 1.06430 1.42783 0.86519 0.81399 0.79512 0.80057 1.20625 1.21176 1.20027 1.21969 0.98021 0.99005 0.97769 1.21830 0.99363 0.98898 0.99202 0.92356 0.93012 0.92670 0.92087 0.92334 0.91139 0.90246 0.88974 0.89192 0.88350 0.87967 0.87436 0.85309 0.78889 0.92738 0.95273 0.88275 0.93120 0.94570 0.95887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.91 37.16 0.37 -1.17 16 2 C -0.12 -1.15 5.93 -26.73 -0.16 -1.31 16 3 C -0.11 -1.33 4.50 -26.74 -0.12 -1.45 16 4 C -0.13 -1.35 4.68 -27.89 -0.13 -1.48 16 5 C 0.51 7.41 6.79 -10.98 -0.07 7.33 16 6 O -0.47 -9.52 12.67 5.56 0.07 -9.45 16 7 N -0.62 -7.86 2.94 -168.90 -0.50 -8.35 16 8 C 0.16 1.37 6.83 60.15 0.41 1.78 16 9 S -0.27 -2.73 23.32 -107.50 -2.51 -5.24 16 10 C -0.06 -0.74 7.04 38.43 0.27 -0.47 16 11 C 0.11 1.62 3.28 -68.01 -0.22 1.39 16 12 H 0.11 1.60 8.14 -51.93 -0.42 1.18 16 13 C 0.52 10.54 3.38 -10.98 -0.04 10.50 16 14 O -0.54 -13.11 14.23 5.56 0.08 -13.03 16 15 N -0.68 -14.50 3.20 -54.93 -0.18 -14.68 16 16 C 0.28 7.17 2.24 -69.09 -0.15 7.02 16 17 H 0.05 1.50 7.58 -51.93 -0.39 1.10 16 18 C -0.52 -14.03 8.73 -34.44 -0.30 -14.33 16 19 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 20 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 21 N -0.88 -25.34 11.30 55.43 0.63 -24.71 16 22 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 23 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 25 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 26 C -0.13 -3.16 5.45 -26.73 -0.15 -3.31 16 27 C -0.14 -3.03 8.51 37.16 0.32 -2.72 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 34 H 0.08 1.20 8.10 -51.93 -0.42 0.78 16 35 H 0.09 0.77 8.01 -51.93 -0.42 0.36 16 36 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.10 0.71 8.03 -51.93 -0.42 0.29 16 38 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.11 1.29 8.10 -51.93 -0.42 0.87 16 40 H 0.13 1.36 8.14 -51.93 -0.42 0.93 16 41 H 0.38 7.39 7.63 -40.82 -0.31 7.08 16 42 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.10 2.70 5.96 -51.93 -0.31 2.40 16 45 H 0.05 1.23 7.85 -51.93 -0.41 0.82 16 46 H 0.04 0.76 5.64 -51.93 -0.29 0.47 16 47 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 381.69 15.07 5.75 5.75 Total: -1.00 -32.72 381.69 -9.75 -42.47 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -8.00 Total: 7.70 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: -0.07 Total: 3.49 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: -0.05 Total: -47.74 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: 0.15 Total: -22.48 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: -2.73 SS G_CDS: -2.51 Total: -5.24 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.72 -9.75 -42.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183840085.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.408 kcal (2) G-P(sol) polarization free energy of solvation -32.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds