Wall clock time and date at job start Tue Mar 31 2020 16:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47356 * 2 1 4 4 C 1.52995 * 109.47238 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.47340 * 180.02562 * 4 3 2 6 6 O 1.21280 * 119.99945 * 0.02562 * 5 4 3 7 7 N 1.34781 * 120.00263 * 180.02562 * 5 4 3 8 8 C 1.47057 * 122.49526 * 4.23242 * 7 5 4 9 9 S 1.83561 * 104.97907 * 175.98181 * 8 7 5 10 10 C 1.84247 * 94.86089 * 341.48835 * 9 8 7 11 11 C 1.46133 * 122.50086 * 184.25437 * 7 5 4 12 12 H 1.09001 * 109.42874 * 90.71808 * 11 7 5 13 13 C 1.50706 * 109.46788 * 330.75323 * 11 7 5 14 14 O 1.21276 * 119.99894 * 136.64852 * 13 11 7 15 15 N 1.34776 * 119.99744 * 316.92060 * 13 11 7 16 16 C 1.46495 * 119.99899 * 179.73100 * 15 13 11 17 17 H 1.09006 * 109.47089 * 324.99578 * 16 15 13 18 18 C 1.50700 * 109.47329 * 204.99822 * 16 15 13 19 19 H 1.08006 * 119.99577 * 0.02562 * 18 16 15 20 20 C 1.37874 * 120.00363 * 179.97438 * 18 16 15 21 21 N 1.31519 * 119.99945 * 359.97438 * 20 18 16 22 22 Si 1.86798 * 119.99956 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47605 * 90.00022 * 22 20 18 24 24 H 1.48510 * 109.46714 * 209.99958 * 22 20 18 25 25 H 1.48494 * 109.47156 * 329.99523 * 22 20 18 26 26 C 1.52996 * 109.47443 * 84.99786 * 16 15 13 27 27 C 1.53001 * 109.47117 * 295.00016 * 26 16 15 28 28 H 1.08997 * 109.47129 * 59.99366 * 1 2 3 29 29 H 1.08995 * 109.47558 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46497 * 299.99663 * 1 2 3 31 31 H 1.09004 * 109.46497 * 240.00337 * 2 1 3 32 32 H 1.08997 * 109.47129 * 120.00634 * 2 1 3 33 33 H 1.09002 * 109.46771 * 60.00216 * 3 2 1 34 34 H 1.08997 * 109.47520 * 300.00395 * 3 2 1 35 35 H 1.09002 * 109.47216 * 60.00301 * 4 3 2 36 36 H 1.09002 * 109.47400 * 300.00221 * 4 3 2 37 37 H 1.08991 * 110.33946 * 57.10542 * 8 7 5 38 38 H 1.09004 * 110.42627 * 294.89983 * 8 7 5 39 39 H 1.08999 * 111.35090 * 275.51128 * 10 9 8 40 40 H 1.08999 * 111.34917 * 150.78161 * 10 9 8 41 41 H 0.97005 * 120.00301 * 359.72433 * 15 13 11 42 42 H 0.96994 * 119.99838 * 179.97438 * 21 20 18 43 43 H 1.09004 * 109.47235 * 55.00209 * 26 16 15 44 44 H 1.09006 * 109.47691 * 175.00173 * 26 16 15 45 45 H 1.08995 * 109.47258 * 299.99940 * 27 26 16 46 46 H 1.08997 * 109.46888 * 60.00148 * 27 26 16 47 47 H 1.09006 * 109.47028 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0724 2.8631 0.0000 6 8 3.2844 3.7850 0.0013 7 7 5.3976 3.1094 -0.0009 8 6 6.4002 2.0377 -0.0941 9 16 8.0156 2.9054 -0.1782 10 6 7.2960 4.5274 -0.6739 11 6 5.9450 4.4612 0.0910 12 1 6.1076 4.7161 1.1383 13 6 4.9739 5.4390 -0.5189 14 8 4.7431 6.4915 0.0377 15 7 4.3578 5.1414 -1.6800 16 6 3.4093 6.0892 -2.2699 17 1 2.8637 6.5991 -1.4758 18 6 2.4375 5.3458 -3.1497 19 1 2.5181 4.2742 -3.2581 20 6 1.4449 6.0333 -3.8152 21 7 1.3458 7.3380 -3.6819 22 14 0.2399 5.1116 -4.9051 23 1 -0.9349 4.6916 -4.0997 24 1 -0.2080 5.9989 -6.0085 25 1 0.9048 3.9117 -5.4738 26 6 4.1709 7.1184 -3.1074 27 6 5.0663 7.9576 -2.1936 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.6768 1.9562 0.8900 34 1 1.6768 1.9563 -0.8899 35 1 3.9330 0.9287 -0.8909 36 1 3.9338 0.9284 0.8891 37 1 6.2403 1.4467 -0.9958 38 1 6.3583 1.3997 0.7887 39 1 7.1398 4.5796 -1.7513 40 1 7.9098 5.3574 -0.3239 41 1 4.5424 4.2995 -2.1252 42 1 0.6477 7.8217 -4.1504 43 1 4.7859 6.6031 -3.8452 44 1 3.4607 7.7693 -3.6174 45 1 4.4514 8.4729 -1.4559 46 1 5.7766 7.3068 -1.6838 47 1 5.6093 8.6905 -2.7904 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183840085.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:32 Heat of formation + Delta-G solvation = -91.096661 kcal Electronic energy + Delta-G solvation = -27953.468471 eV Core-core repulsion = 24261.701882 eV Total energy + Delta-G solvation = -3691.766589 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.87728 -39.98492 -37.56983 -36.84045 -36.22253 -34.25284 -33.17750 -32.29985 -30.95440 -29.02562 -28.19996 -26.22843 -25.19069 -24.39534 -22.49040 -21.83577 -21.18583 -20.48295 -19.03288 -18.33331 -17.91537 -17.66638 -17.05341 -16.74592 -16.66014 -16.07457 -15.98831 -15.70869 -15.22886 -14.72252 -14.64596 -14.53882 -14.44119 -14.35398 -13.84147 -13.72676 -13.44034 -13.38447 -13.24309 -13.18270 -13.11139 -12.87895 -12.72670 -12.22040 -12.16267 -12.07322 -12.02942 -11.89388 -11.78877 -11.59136 -11.43272 -11.06683 -10.88262 -10.63000 -10.51964 -10.03788 -9.49474 -8.87136 -8.15684 -6.31095 0.53142 0.87014 1.38618 1.40741 1.43280 1.50360 1.58099 1.94365 2.35933 2.62752 3.13297 3.19672 3.55054 3.65021 3.91877 4.01860 4.04834 4.21175 4.26663 4.33955 4.35427 4.46851 4.48180 4.53128 4.56067 4.62522 4.73451 4.75239 4.92996 4.95873 5.03691 5.04331 5.10946 5.24680 5.30516 5.40482 5.43444 5.53159 5.55892 5.64973 5.78449 5.95579 6.06870 6.18333 6.75142 6.98005 7.09006 7.33556 7.56485 8.90124 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.008192 B = 0.006118 C = 0.003877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3417.067721 B = 4575.373141 C = 7220.272795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.113 4.113 3 C -0.108 4.108 4 C -0.119 4.119 5 C 0.502 3.498 6 O -0.541 6.541 7 N -0.620 5.620 8 C 0.151 3.849 9 S -0.250 6.250 10 C -0.063 4.063 11 C 0.121 3.879 12 H 0.108 0.892 13 C 0.522 3.478 14 O -0.593 6.593 15 N -0.678 5.678 16 C 0.291 3.709 17 H -0.017 1.017 18 C -0.532 4.532 19 H 0.060 0.940 20 C 0.014 3.986 21 N -0.917 5.917 22 Si 0.965 3.035 23 H -0.283 1.283 24 H -0.281 1.281 25 H -0.258 1.258 26 C -0.120 4.120 27 C -0.121 4.121 28 H 0.038 0.962 29 H 0.070 0.930 30 H 0.046 0.954 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.045 0.955 34 H 0.038 0.962 35 H 0.124 0.876 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.136 0.864 39 H 0.106 0.894 40 H 0.140 0.860 41 H 0.390 0.610 42 H 0.263 0.737 43 H 0.043 0.957 44 H 0.070 0.930 45 H 0.020 0.980 46 H 0.046 0.954 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.283 -18.854 5.832 22.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.150 4.150 3 C -0.147 4.147 4 C -0.158 4.158 5 C 0.291 3.709 6 O -0.416 6.416 7 N -0.360 5.360 8 C -0.081 4.081 9 S -0.023 6.023 10 C -0.212 4.212 11 C 0.012 3.988 12 H 0.126 0.874 13 C 0.307 3.693 14 O -0.474 6.474 15 N -0.324 5.324 16 C 0.187 3.813 17 H 0.001 0.999 18 C -0.570 4.570 19 H 0.078 0.922 20 C -0.186 4.186 21 N -0.556 5.556 22 Si 0.790 3.210 23 H -0.209 1.209 24 H -0.206 1.206 25 H -0.182 1.182 26 C -0.160 4.160 27 C -0.179 4.179 28 H 0.057 0.943 29 H 0.089 0.911 30 H 0.065 0.935 31 H 0.095 0.905 32 H 0.101 0.899 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.142 0.858 36 H 0.147 0.853 37 H 0.145 0.855 38 H 0.154 0.846 39 H 0.124 0.876 40 H 0.158 0.842 41 H 0.223 0.777 42 H 0.073 0.927 43 H 0.062 0.938 44 H 0.088 0.912 45 H 0.039 0.961 46 H 0.065 0.935 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 11.697 -17.862 6.350 22.275 hybrid contribution -2.102 0.542 -0.769 2.303 sum 9.596 -17.320 5.581 20.571 Atomic orbital electron populations 1.21809 0.96600 1.02067 1.01095 1.21476 0.95453 0.94618 1.03446 1.21361 0.94015 0.97918 1.01364 1.21737 0.96734 0.90176 1.07173 1.21721 0.80301 0.93807 0.75102 1.90978 1.55012 1.47570 1.47993 1.48614 1.06304 1.05051 1.75983 1.24310 0.84236 0.90870 1.08651 1.88192 1.12983 1.10190 1.90914 1.24675 0.94277 0.98481 1.03774 1.22126 0.92668 0.82692 1.01328 0.87441 1.20356 0.81236 0.86674 0.81040 1.90663 1.65875 1.28004 1.62878 1.45903 1.42407 1.21316 1.22818 1.18179 0.85851 0.86945 0.90327 0.99881 1.21424 1.13957 0.93912 1.27742 0.92157 1.25735 0.99096 0.95656 0.98079 1.70054 1.33846 1.08043 1.43680 0.85452 0.78741 0.78731 0.78074 1.20873 1.20610 1.18230 1.21790 0.97685 0.98557 0.97928 1.21660 0.98758 0.99084 0.98357 0.94256 0.91070 0.93474 0.90525 0.89873 0.93617 0.94315 0.85806 0.85272 0.85532 0.84644 0.87561 0.84236 0.77696 0.92750 0.93845 0.91154 0.96121 0.93530 0.93177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.02 9.91 71.98 0.71 -2.30 16 2 C -0.11 -1.86 5.93 30.59 0.18 -1.67 16 3 C -0.11 -2.58 4.50 30.59 0.14 -2.44 16 4 C -0.12 -2.09 4.68 29.85 0.14 -1.95 16 5 C 0.50 14.14 6.79 87.66 0.60 14.74 16 6 O -0.54 -22.93 12.67 -3.03 -0.04 -22.97 16 7 N -0.62 -14.20 2.94 -806.67 -2.37 -16.57 16 8 C 0.15 1.96 6.83 127.66 0.87 2.83 16 9 S -0.25 -4.18 23.32 -56.49 -1.32 -5.49 16 10 C -0.06 -1.35 7.04 72.80 0.51 -0.83 16 11 C 0.12 3.43 3.28 45.14 0.15 3.58 16 12 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 13 C 0.52 21.72 3.38 87.66 0.30 22.02 16 14 O -0.59 -30.38 14.23 -3.02 -0.04 -30.42 16 15 N -0.68 -29.75 3.20 -446.11 -1.43 -31.17 16 16 C 0.29 15.84 2.24 44.24 0.10 15.94 16 17 H -0.02 -1.12 7.58 -2.38 -0.02 -1.14 16 18 C -0.53 -29.80 8.73 25.60 0.22 -29.58 16 19 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 20 C 0.01 0.77 5.29 84.65 0.45 1.22 16 21 N -0.92 -54.89 11.30 21.45 0.24 -54.64 16 22 Si 0.97 43.99 29.54 68.60 2.03 46.02 16 23 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 24 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 25 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 26 C -0.12 -6.15 5.45 30.59 0.17 -5.98 16 27 C -0.12 -5.60 8.51 71.98 0.61 -4.99 16 28 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.04 1.28 8.10 -2.39 -0.02 1.26 16 34 H 0.04 1.22 8.10 -2.39 -0.02 1.20 16 35 H 0.12 1.46 8.01 -2.39 -0.02 1.44 16 36 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.13 1.06 8.03 -2.39 -0.02 1.04 16 38 H 0.14 0.99 8.14 -2.38 -0.02 0.97 16 39 H 0.11 2.33 8.10 -2.39 -0.02 2.31 16 40 H 0.14 2.68 8.14 -2.39 -0.02 2.66 16 41 H 0.39 15.30 7.63 -92.70 -0.71 14.60 16 42 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 43 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 44 H 0.07 4.02 5.96 -2.38 -0.01 4.01 16 45 H 0.02 1.03 7.85 -2.39 -0.02 1.01 16 46 H 0.05 2.02 5.64 -2.39 -0.01 2.00 16 47 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 Total: -1.00 -79.40 381.69 2.46 -76.94 By element: Atomic # 1 Polarization: 27.50 SS G_CDS: 0.25 Total: 27.74 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: 5.15 Total: 10.57 kcal Atomic # 7 Polarization: -98.83 SS G_CDS: -3.56 Total: -102.39 kcal Atomic # 8 Polarization: -53.31 SS G_CDS: -0.08 Total: -53.39 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Atomic # 16 Polarization: -4.18 SS G_CDS: -1.32 Total: -5.49 kcal Total: -79.40 2.46 -76.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183840085.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.157 kcal (2) G-P(sol) polarization free energy of solvation -79.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds