Wall clock time and date at job start Tue Mar 31 2020 16:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46977 * 2 1 4 4 C 1.52992 * 109.47274 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.47257 * 179.97438 * 4 3 2 6 6 O 1.21279 * 120.00113 * 0.02562 * 5 4 3 7 7 N 1.34784 * 119.99961 * 180.02562 * 5 4 3 8 8 C 1.47606 * 122.42855 * 359.71382 * 7 5 4 9 9 S 1.84336 * 102.51454 * 155.11066 * 8 7 5 10 10 C 1.84214 * 93.82692 * 33.71295 * 9 8 7 11 11 C 1.45497 * 122.42975 * 179.97438 * 7 5 4 12 12 H 1.09000 * 108.75517 * 301.89474 * 11 7 5 13 13 C 1.50704 * 108.75077 * 60.11113 * 11 7 5 14 14 O 1.21277 * 120.00330 * 359.97438 * 13 11 7 15 15 N 1.34781 * 119.99916 * 180.02562 * 13 11 7 16 16 C 1.46493 * 120.00015 * 180.02562 * 15 13 11 17 17 H 1.08995 * 109.47676 * 34.99417 * 16 15 13 18 18 C 1.50702 * 109.47366 * 154.99755 * 16 15 13 19 19 H 1.07997 * 119.99765 * 359.97438 * 18 16 15 20 20 C 1.37872 * 120.00171 * 179.97438 * 18 16 15 21 21 N 1.31510 * 120.00153 * 359.97438 * 20 18 16 22 22 Si 1.86803 * 120.00133 * 180.02562 * 20 18 16 23 23 H 1.48490 * 109.47480 * 89.99875 * 22 20 18 24 24 H 1.48497 * 109.47272 * 210.00219 * 22 20 18 25 25 H 1.48505 * 109.46782 * 329.99895 * 22 20 18 26 26 C 1.53003 * 109.46849 * 274.99576 * 16 15 13 27 27 C 1.52998 * 109.47145 * 65.00255 * 26 16 15 28 28 H 1.08997 * 109.46441 * 60.00731 * 1 2 3 29 29 H 1.09000 * 109.46348 * 179.97438 * 1 2 3 30 30 H 1.08988 * 109.47430 * 300.00270 * 1 2 3 31 31 H 1.08999 * 109.47785 * 240.00098 * 2 1 3 32 32 H 1.09000 * 109.46944 * 119.99173 * 2 1 3 33 33 H 1.09004 * 109.47166 * 59.99234 * 3 2 1 34 34 H 1.09005 * 109.46988 * 299.99622 * 3 2 1 35 35 H 1.09004 * 109.47330 * 59.99726 * 4 3 2 36 36 H 1.08997 * 109.47279 * 300.00213 * 4 3 2 37 37 H 1.09001 * 110.77288 * 273.47389 * 8 7 5 38 38 H 1.08997 * 110.77688 * 36.89796 * 8 7 5 39 39 H 1.08995 * 111.05442 * 209.57225 * 10 9 8 40 40 H 1.09005 * 111.05151 * 85.59527 * 10 9 8 41 41 H 0.97003 * 119.99685 * 359.97438 * 15 13 11 42 42 H 0.97007 * 120.00543 * 179.97438 * 21 20 18 43 43 H 1.09006 * 109.47273 * 185.00452 * 26 16 15 44 44 H 1.09003 * 109.46928 * 304.99974 * 26 16 15 45 45 H 1.08990 * 109.47451 * 60.00205 * 27 26 16 46 46 H 1.09000 * 109.46985 * 180.02562 * 27 26 16 47 47 H 1.09000 * 109.46975 * 299.99855 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0722 2.8635 0.0000 6 8 3.2841 3.7853 -0.0004 7 7 5.3974 3.1098 -0.0001 8 6 6.4033 2.0296 0.0066 9 16 7.8708 2.8456 -0.7538 10 6 7.4850 4.4940 -0.0275 11 6 5.9401 4.4598 -0.0013 12 1 5.5649 4.9876 -0.8780 13 6 5.4608 5.1756 1.2353 14 8 4.7406 4.6041 2.0261 15 7 5.8319 6.4514 1.4619 16 6 5.3665 7.1470 2.6642 17 1 5.3034 6.4402 3.4915 18 6 6.3358 8.2462 3.0155 19 1 7.2111 8.4099 2.4045 20 6 6.1050 9.0429 4.1169 21 7 5.0389 8.8439 4.8606 22 14 7.3061 10.4059 4.5519 23 1 6.8997 11.6603 3.8692 24 1 7.3024 10.6185 6.0215 25 1 8.6712 10.0221 4.1107 26 6 3.9849 7.7499 2.4020 27 6 2.9740 6.6256 2.1680 28 1 -0.3632 0.5137 -0.8901 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8898 31 1 1.8935 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 1.6766 1.9564 0.8899 34 1 1.6767 1.9564 -0.8901 35 1 3.9337 0.9286 -0.8891 36 1 3.9329 0.9289 0.8908 37 1 6.6206 1.7100 1.0258 38 1 6.0709 1.1880 -0.6010 39 1 7.8478 5.2984 -0.6673 40 1 7.8922 4.5831 0.9797 41 1 6.4077 6.9086 0.8292 42 1 4.8767 9.4041 5.6358 43 1 3.6772 8.3417 3.2640 44 1 4.0287 8.3886 1.5197 45 1 2.9301 5.9870 3.0502 46 1 1.9898 7.0551 1.9808 47 1 3.2817 6.0338 1.3060 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183840102.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:35 Heat of formation + Delta-G solvation = -99.412906 kcal Electronic energy + Delta-G solvation = -27222.094359 eV Core-core repulsion = 23529.967151 eV Total energy + Delta-G solvation = -3692.127209 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.69784 -40.06689 -37.53822 -36.66464 -36.20118 -34.42771 -33.37485 -32.22454 -30.91117 -28.94513 -28.31183 -26.19819 -25.29281 -24.27799 -22.46563 -21.79480 -21.16598 -20.39252 -19.15362 -18.40655 -17.94825 -17.78298 -17.07127 -16.83194 -16.49580 -16.14927 -15.97235 -15.54734 -15.22642 -14.88770 -14.63212 -14.59019 -14.47458 -14.19343 -13.81077 -13.73993 -13.48969 -13.34925 -13.18705 -13.09198 -12.96590 -12.85977 -12.65894 -12.22489 -12.17749 -12.08199 -12.06795 -11.94698 -11.83767 -11.60426 -11.44924 -11.07129 -10.92736 -10.64766 -10.52240 -9.83362 -9.63119 -8.93423 -8.16093 -6.33996 0.55377 0.86251 1.44112 1.44988 1.48840 1.55723 1.74292 1.84572 2.35922 2.63380 3.12221 3.15568 3.56192 3.71947 3.90272 3.98331 4.01938 4.10722 4.26933 4.33774 4.38106 4.44488 4.46149 4.50090 4.55303 4.60023 4.73084 4.75907 4.93154 4.99834 5.02050 5.08855 5.11923 5.24054 5.29433 5.39148 5.42169 5.50498 5.54050 5.61644 5.76874 5.90602 6.14784 6.15283 6.74425 6.94661 7.16191 7.33404 7.57099 8.89251 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013250 B = 0.003631 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.685946 B = 7709.000674 C = 9474.403344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.116 4.116 3 C -0.103 4.103 4 C -0.125 4.125 5 C 0.522 3.478 6 O -0.560 6.560 7 N -0.606 5.606 8 C 0.154 3.846 9 S -0.258 6.258 10 C -0.059 4.059 11 C 0.121 3.879 12 H 0.111 0.889 13 C 0.493 3.507 14 O -0.564 6.564 15 N -0.703 5.703 16 C 0.286 3.714 17 H -0.004 1.004 18 C -0.545 4.545 19 H 0.076 0.924 20 C 0.014 3.986 21 N -0.917 5.917 22 Si 0.971 3.029 23 H -0.273 1.273 24 H -0.289 1.289 25 H -0.261 1.261 26 C -0.119 4.119 27 C -0.119 4.119 28 H 0.051 0.949 29 H 0.068 0.932 30 H 0.042 0.958 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.037 0.963 34 H 0.056 0.944 35 H 0.130 0.870 36 H 0.109 0.891 37 H 0.102 0.898 38 H 0.153 0.847 39 H 0.156 0.844 40 H 0.100 0.900 41 H 0.403 0.597 42 H 0.264 0.736 43 H 0.070 0.930 44 H 0.037 0.963 45 H 0.018 0.982 46 H 0.032 0.968 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.817 -17.344 -14.210 22.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.154 4.154 3 C -0.141 4.141 4 C -0.165 4.165 5 C 0.311 3.689 6 O -0.437 6.437 7 N -0.342 5.342 8 C -0.078 4.078 9 S -0.031 6.031 10 C -0.208 4.208 11 C 0.011 3.989 12 H 0.129 0.871 13 C 0.276 3.724 14 O -0.443 6.443 15 N -0.353 5.353 16 C 0.183 3.817 17 H 0.013 0.987 18 C -0.583 4.583 19 H 0.094 0.906 20 C -0.186 4.186 21 N -0.555 5.555 22 Si 0.795 3.205 23 H -0.199 1.199 24 H -0.215 1.215 25 H -0.185 1.185 26 C -0.158 4.158 27 C -0.176 4.176 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.061 0.939 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.148 0.852 36 H 0.127 0.873 37 H 0.120 0.880 38 H 0.171 0.829 39 H 0.174 0.826 40 H 0.119 0.881 41 H 0.238 0.762 42 H 0.073 0.927 43 H 0.089 0.911 44 H 0.056 0.944 45 H 0.037 0.963 46 H 0.052 0.948 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.682 -17.626 -14.221 22.806 hybrid contribution -0.465 1.772 1.368 2.286 sum 2.217 -15.854 -12.854 20.530 Atomic orbital electron populations 1.21791 0.96012 1.02148 1.01393 1.21504 0.95917 0.94693 1.03238 1.21335 0.93289 0.97958 1.01563 1.21756 0.97503 0.90710 1.06486 1.21364 0.80100 0.93360 0.74068 1.90720 1.55248 1.48291 1.49408 1.48324 1.06385 1.04447 1.75019 1.24560 0.86130 0.92462 1.04694 1.88282 1.37190 1.09747 1.67916 1.24532 0.91495 0.98555 1.06180 1.21177 0.95150 0.85500 0.97066 0.87115 1.21154 0.80617 0.82666 0.87934 1.90662 1.37620 1.67365 1.48646 1.46176 1.50884 1.12504 1.25738 1.18264 0.91561 0.90042 0.81882 0.98661 1.21573 1.08671 1.15859 1.12181 0.90593 1.25799 0.97142 0.99880 0.95791 1.70067 1.28012 1.40347 1.17101 0.85365 0.79262 0.78841 0.76987 1.19882 1.21462 1.18497 1.21796 0.96426 0.97175 1.00428 1.21635 0.97756 0.98100 1.00116 0.92956 0.91287 0.93920 0.89898 0.91176 0.94436 0.92552 0.85236 0.87262 0.88004 0.82947 0.82612 0.88118 0.76213 0.92701 0.91150 0.94386 0.96285 0.94849 0.93112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.44 9.91 71.98 0.71 -1.73 16 2 C -0.12 -1.71 5.93 30.60 0.18 -1.53 16 3 C -0.10 -2.23 4.50 30.59 0.14 -2.09 16 4 C -0.13 -2.33 4.49 29.85 0.13 -2.20 16 5 C 0.52 15.28 6.74 87.66 0.59 15.87 16 6 O -0.56 -22.37 14.15 15.54 0.22 -22.15 16 7 N -0.61 -15.47 2.76 -807.02 -2.23 -17.70 16 8 C 0.15 2.59 7.23 127.56 0.92 3.51 16 9 S -0.26 -4.74 23.44 -56.49 -1.32 -6.06 16 10 C -0.06 -1.22 6.68 72.51 0.48 -0.74 16 11 C 0.12 3.37 2.87 44.96 0.13 3.50 16 12 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 13 C 0.49 19.35 5.03 87.66 0.44 19.79 16 14 O -0.56 -27.15 11.72 15.54 0.18 -26.97 16 15 N -0.70 -28.60 4.89 -446.10 -2.18 -30.78 16 16 C 0.29 14.77 2.24 44.25 0.10 14.87 16 17 H 0.00 -0.28 7.58 -2.39 -0.02 -0.30 16 18 C -0.54 -28.48 8.73 25.60 0.22 -28.25 16 19 H 0.08 3.65 7.74 -2.91 -0.02 3.63 16 20 C 0.01 0.74 5.29 84.65 0.45 1.19 16 21 N -0.92 -53.07 11.29 21.44 0.24 -52.83 16 22 Si 0.97 41.88 29.54 68.60 2.03 43.91 16 23 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 24 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 25 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 26 C -0.12 -6.20 5.45 30.59 0.17 -6.03 16 27 C -0.12 -5.98 8.51 71.98 0.61 -5.37 16 28 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.04 1.06 8.10 -2.38 -0.02 1.04 16 34 H 0.06 1.34 8.10 -2.38 -0.02 1.32 16 35 H 0.13 1.38 7.64 -2.38 -0.02 1.37 16 36 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 37 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.15 1.42 7.13 -2.39 -0.02 1.41 16 39 H 0.16 2.34 8.14 -2.39 -0.02 2.32 16 40 H 0.10 2.33 7.85 -2.38 -0.02 2.31 16 41 H 0.40 13.51 8.30 -92.71 -0.77 12.74 16 42 H 0.26 14.51 8.31 -92.70 -0.77 13.74 16 43 H 0.07 4.06 5.95 -2.38 -0.01 4.04 16 44 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.02 1.00 7.85 -2.39 -0.02 0.98 16 46 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 47 H 0.05 2.56 5.14 -2.39 -0.01 2.55 16 Total: -1.00 -75.65 381.95 2.41 -73.24 By element: Atomic # 1 Polarization: 28.35 SS G_CDS: 0.19 Total: 28.54 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: 5.28 Total: 10.81 kcal Atomic # 7 Polarization: -97.14 SS G_CDS: -4.17 Total: -101.31 kcal Atomic # 8 Polarization: -49.52 SS G_CDS: 0.40 Total: -49.12 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Atomic # 16 Polarization: -4.74 SS G_CDS: -1.32 Total: -6.06 kcal Total: -75.65 2.41 -73.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183840102.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.176 kcal (2) G-P(sol) polarization free energy of solvation -75.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds