Wall clock time and date at job start Tue Mar 31 2020 16:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53002 * 109.47158 * 2 1 4 4 C 1.53004 * 109.46934 * 179.97438 * 3 2 1 5 5 C 1.50705 * 109.47000 * 179.97438 * 4 3 2 6 6 O 1.21287 * 119.99819 * 359.97438 * 5 4 3 7 7 N 1.34776 * 120.00006 * 179.97438 * 5 4 3 8 8 C 1.47007 * 122.46510 * 4.10352 * 7 5 4 9 9 S 1.83565 * 104.96425 * 175.93298 * 8 7 5 10 10 C 1.84245 * 94.86139 * 341.52753 * 9 8 7 11 11 C 1.46130 * 122.49749 * 184.14928 * 7 5 4 12 12 H 1.08996 * 109.47114 * 90.76178 * 11 7 5 13 13 C 1.50704 * 109.47246 * 330.77388 * 11 7 5 14 14 O 1.21277 * 119.99648 * 318.39948 * 13 11 7 15 15 N 1.34775 * 120.00211 * 138.39903 * 13 11 7 16 16 C 1.46494 * 119.99923 * 179.97438 * 15 13 11 17 17 H 1.08997 * 109.47298 * 35.00351 * 16 15 13 18 18 C 1.50706 * 109.47093 * 155.00052 * 16 15 13 19 19 H 1.07998 * 119.99681 * 0.02562 * 18 16 15 20 20 C 1.37879 * 120.00204 * 179.97438 * 18 16 15 21 21 N 1.31517 * 119.99543 * 0.02562 * 20 18 16 22 22 Si 1.86792 * 120.00266 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47047 * 59.99637 * 22 20 18 24 24 H 1.48497 * 109.47679 * 180.02562 * 22 20 18 25 25 H 1.48510 * 109.47016 * 300.00215 * 22 20 18 26 26 C 1.53004 * 109.47339 * 274.99883 * 16 15 13 27 27 C 1.53004 * 109.46848 * 65.00394 * 26 16 15 28 28 H 1.08998 * 109.47509 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47757 * 300.00428 * 1 2 3 30 30 H 1.09004 * 109.47210 * 60.00451 * 1 2 3 31 31 H 1.09000 * 109.47757 * 239.99572 * 2 1 3 32 32 H 1.09004 * 109.47210 * 119.99549 * 2 1 3 33 33 H 1.08995 * 109.47130 * 59.99945 * 3 2 1 34 34 H 1.09002 * 109.47030 * 299.99445 * 3 2 1 35 35 H 1.09005 * 109.46989 * 60.00128 * 4 3 2 36 36 H 1.08989 * 109.47034 * 299.99814 * 4 3 2 37 37 H 1.08994 * 110.31296 * 57.08065 * 8 7 5 38 38 H 1.09000 * 110.46522 * 294.86474 * 8 7 5 39 39 H 1.09007 * 111.34906 * 275.50829 * 10 9 8 40 40 H 1.09008 * 111.34797 * 150.78450 * 10 9 8 41 41 H 0.97002 * 119.99724 * 0.02562 * 15 13 11 42 42 H 0.97006 * 119.99269 * 180.02562 * 21 20 18 43 43 H 1.08997 * 109.47231 * 305.00005 * 26 16 15 44 44 H 1.09002 * 109.46980 * 184.99850 * 26 16 15 45 45 H 1.08998 * 109.46847 * 300.00028 * 27 26 16 46 46 H 1.08997 * 109.47522 * 59.99789 * 27 26 16 47 47 H 1.08998 * 109.46923 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0723 2.8633 0.0000 6 8 3.2842 3.7852 -0.0013 7 7 5.3974 3.1096 0.0009 8 6 6.3994 2.0373 -0.0862 9 16 8.0151 2.9043 -0.1716 10 6 7.2965 4.5247 -0.6740 11 6 5.9446 4.4616 0.0896 12 1 6.1061 4.7204 1.1360 13 6 4.9745 5.4375 -0.5250 14 8 4.4016 5.1551 -1.5560 15 7 4.7436 6.6240 0.0710 16 6 3.8010 7.5728 -0.5268 17 1 2.9816 7.0259 -0.9932 18 6 3.2537 8.4800 0.5450 19 1 3.5761 8.3618 1.5689 20 6 2.3421 9.4615 0.2182 21 7 1.9499 9.6056 -1.0288 22 14 1.6642 10.5863 1.5465 23 1 2.7809 11.3310 2.1818 24 1 0.7086 11.5481 0.9407 25 1 0.9638 9.7736 2.5734 26 6 4.5223 8.4106 -1.5846 27 6 4.9693 7.5054 -2.7343 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6767 1.9563 -0.8901 35 1 3.9336 0.9285 -0.8892 36 1 3.9329 0.9288 0.8908 37 1 6.2403 1.4430 -0.9859 38 1 6.3563 1.4027 0.7989 39 1 7.1415 4.5730 -1.7520 40 1 7.9102 5.3559 -0.3265 41 1 5.2021 6.8500 0.8954 42 1 1.3088 10.2964 -1.2588 43 1 5.3945 8.8877 -1.1375 44 1 3.8456 9.1751 -1.9661 45 1 5.6460 6.7408 -2.3527 46 1 4.0972 7.0283 -3.1813 47 1 5.4836 8.1021 -3.4876 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183840117.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:39 Heat of formation + Delta-G solvation = -76.650455 kcal Electronic energy + Delta-G solvation = -27337.465816 eV Core-core repulsion = 23646.325661 eV Total energy + Delta-G solvation = -3691.140155 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.47757 -38.43859 -36.31298 -35.31830 -34.82843 -32.41495 -31.78269 -30.74981 -30.04885 -27.48123 -26.86211 -25.23935 -23.70378 -22.73277 -21.38899 -20.55690 -19.41715 -19.02831 -17.67226 -17.20712 -16.70319 -16.26503 -15.91140 -15.24854 -15.03496 -14.86141 -14.37783 -14.19389 -13.98251 -13.79121 -13.73589 -13.33096 -12.97155 -12.85534 -12.61547 -12.48669 -12.35453 -12.25367 -11.81214 -11.45271 -11.37228 -11.27961 -11.21144 -11.07226 -10.95366 -10.83778 -10.70863 -10.65963 -10.27441 -10.13163 -9.63525 -9.51270 -9.17930 -8.98719 -8.68448 -8.42947 -8.07364 -7.71456 -6.05940 -4.14402 1.36532 1.74471 2.54275 2.77493 3.29245 3.34304 3.35731 3.45489 4.02681 4.29213 4.42048 4.59859 4.73028 4.74089 4.82170 4.89322 4.90308 5.09965 5.16953 5.24045 5.25660 5.33083 5.43503 5.52910 5.57535 5.71709 5.72979 5.81078 6.04190 6.10454 6.17649 6.34754 6.40464 6.45947 6.67865 7.04882 7.16804 7.24683 7.41208 7.54690 7.67283 7.78593 7.99277 8.23868 8.25869 8.73836 8.85236 9.22550 9.52315 10.99533 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.009553 B = 0.004268 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2930.393565 B = 6559.465231 C = 8580.545741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.108 4.108 4 C -0.131 4.131 5 C 0.516 3.484 6 O -0.480 6.480 7 N -0.612 5.612 8 C 0.158 3.842 9 S -0.268 6.268 10 C -0.059 4.059 11 C 0.110 3.890 12 H 0.095 0.905 13 C 0.520 3.480 14 O -0.525 6.525 15 N -0.702 5.702 16 C 0.277 3.723 17 H 0.051 0.949 18 C -0.531 4.531 19 H 0.059 0.941 20 C 0.067 3.933 21 N -0.883 5.883 22 Si 0.900 3.100 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.277 1.277 26 C -0.128 4.128 27 C -0.135 4.135 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.108 0.892 40 H 0.128 0.872 41 H 0.384 0.616 42 H 0.264 0.736 43 H 0.030 0.970 44 H 0.099 0.901 45 H 0.035 0.965 46 H 0.049 0.951 47 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.352 -17.842 2.873 19.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.146 4.146 4 C -0.171 4.171 5 C 0.303 3.697 6 O -0.350 6.350 7 N -0.352 5.352 8 C -0.076 4.076 9 S -0.041 6.041 10 C -0.209 4.209 11 C 0.001 3.999 12 H 0.113 0.887 13 C 0.301 3.699 14 O -0.402 6.402 15 N -0.350 5.350 16 C 0.175 3.825 17 H 0.068 0.932 18 C -0.569 4.569 19 H 0.077 0.923 20 C -0.136 4.136 21 N -0.521 5.521 22 Si 0.727 3.273 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.202 1.202 26 C -0.166 4.166 27 C -0.192 4.192 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.114 0.886 38 H 0.120 0.880 39 H 0.127 0.873 40 H 0.146 0.854 41 H 0.216 0.784 42 H 0.074 0.926 43 H 0.049 0.951 44 H 0.117 0.883 45 H 0.054 0.946 46 H 0.068 0.932 47 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 8.440 -17.786 2.198 19.810 hybrid contribution -1.008 1.015 0.901 1.691 sum 7.432 -16.771 3.099 18.604 Atomic orbital electron populations 1.21761 0.95682 1.01325 1.02302 1.21524 0.96211 0.96560 1.01683 1.21409 0.92390 0.96564 1.04194 1.21668 0.98387 0.93158 1.03880 1.20663 0.80410 0.92319 0.76306 1.90903 1.53369 1.45527 1.45236 1.48178 1.05839 1.04401 1.76741 1.23829 0.86457 0.91931 1.05378 1.88108 1.12759 1.12512 1.90765 1.24692 0.95444 0.96118 1.04614 1.21866 0.93119 0.84195 1.00727 0.88674 1.19494 0.82511 0.82400 0.85482 1.90666 1.49261 1.76123 1.24133 1.46339 1.45166 1.16759 1.26733 1.18723 0.86561 0.85531 0.91659 0.93157 1.21194 1.25665 1.16087 0.93998 0.92301 1.24864 0.95971 0.97195 0.95597 1.69891 1.31931 1.33411 1.16835 0.86538 0.78819 0.80257 0.81648 1.20211 1.21162 1.20238 1.21949 0.99380 0.99721 0.95598 1.21822 1.00299 0.98691 0.98387 0.92934 0.92590 0.92505 0.92104 0.92172 0.91038 0.90788 0.89117 0.89147 0.88610 0.87972 0.87317 0.85403 0.78377 0.92614 0.95126 0.88311 0.94597 0.93193 0.95945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.91 37.15 0.37 -1.01 16 2 C -0.12 -1.08 5.93 -26.73 -0.16 -1.24 16 3 C -0.11 -1.26 4.50 -26.73 -0.12 -1.38 16 4 C -0.13 -1.39 4.68 -27.88 -0.13 -1.52 16 5 C 0.52 8.02 7.22 -10.98 -0.08 7.94 16 6 O -0.48 -10.14 12.76 -18.08 -0.23 -10.37 16 7 N -0.61 -8.30 3.13 -168.94 -0.53 -8.83 16 8 C 0.16 1.52 6.82 60.12 0.41 1.93 16 9 S -0.27 -2.85 23.32 -107.50 -2.51 -5.36 16 10 C -0.06 -0.72 7.04 38.43 0.27 -0.45 16 11 C 0.11 1.61 3.29 -68.01 -0.22 1.39 16 12 H 0.10 1.27 8.03 -51.93 -0.42 0.85 16 13 C 0.52 10.32 3.47 -10.98 -0.04 10.28 16 14 O -0.53 -12.38 12.01 -18.07 -0.22 -12.60 16 15 N -0.70 -14.84 5.02 -54.93 -0.28 -15.12 16 16 C 0.28 7.14 2.24 -69.08 -0.15 6.98 16 17 H 0.05 1.55 7.58 -51.93 -0.39 1.16 16 18 C -0.53 -14.40 8.73 -34.44 -0.30 -14.70 16 19 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 20 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 21 N -0.88 -25.29 11.29 55.43 0.63 -24.66 16 22 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 C -0.13 -3.13 5.45 -26.73 -0.15 -3.27 16 27 C -0.13 -3.01 8.52 37.16 0.32 -2.69 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 34 H 0.07 1.04 8.10 -51.93 -0.42 0.62 16 35 H 0.09 0.80 8.01 -51.93 -0.42 0.38 16 36 H 0.09 0.72 8.14 -51.94 -0.42 0.30 16 37 H 0.10 0.79 8.02 -51.93 -0.42 0.37 16 38 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.11 1.44 8.10 -51.93 -0.42 1.02 16 40 H 0.13 1.29 8.14 -51.92 -0.42 0.87 16 41 H 0.38 7.10 8.46 -40.82 -0.35 6.76 16 42 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 43 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.10 2.69 5.95 -51.93 -0.31 2.38 16 45 H 0.03 0.76 5.65 -51.93 -0.29 0.46 16 46 H 0.05 1.22 7.85 -51.93 -0.41 0.81 16 47 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 382.80 15.07 5.77 5.77 Total: -1.00 -33.51 382.80 -10.49 -44.00 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -8.03 Total: 7.11 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -0.08 Total: 3.99 kcal Atomic # 7 Polarization: -48.43 SS G_CDS: -0.18 Total: -48.61 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -0.45 Total: -22.98 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: -2.85 SS G_CDS: -2.51 Total: -5.36 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.51 -10.49 -44.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183840117.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.647 kcal (2) G-P(sol) polarization free energy of solvation -33.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds