Wall clock time and date at job start Tue Mar 31 2020 16:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53002 * 109.47158 * 2 1 4 4 C 1.53004 * 109.46934 * 179.97438 * 3 2 1 5 5 C 1.50705 * 109.47000 * 179.97438 * 4 3 2 6 6 O 1.21287 * 119.99819 * 359.97438 * 5 4 3 7 7 N 1.34776 * 120.00006 * 179.97438 * 5 4 3 8 8 C 1.47007 * 122.46510 * 4.10352 * 7 5 4 9 9 S 1.83565 * 104.96425 * 175.93298 * 8 7 5 10 10 C 1.84245 * 94.86139 * 341.52753 * 9 8 7 11 11 C 1.46130 * 122.49749 * 184.14928 * 7 5 4 12 12 H 1.08996 * 109.47114 * 90.76178 * 11 7 5 13 13 C 1.50704 * 109.47246 * 330.77388 * 11 7 5 14 14 O 1.21277 * 119.99648 * 318.39948 * 13 11 7 15 15 N 1.34775 * 120.00211 * 138.39903 * 13 11 7 16 16 C 1.46494 * 119.99923 * 179.97438 * 15 13 11 17 17 H 1.08997 * 109.47298 * 35.00351 * 16 15 13 18 18 C 1.50706 * 109.47093 * 155.00052 * 16 15 13 19 19 H 1.07998 * 119.99681 * 0.02562 * 18 16 15 20 20 C 1.37879 * 120.00204 * 179.97438 * 18 16 15 21 21 N 1.31517 * 119.99543 * 0.02562 * 20 18 16 22 22 Si 1.86792 * 120.00266 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47047 * 59.99637 * 22 20 18 24 24 H 1.48497 * 109.47679 * 180.02562 * 22 20 18 25 25 H 1.48510 * 109.47016 * 300.00215 * 22 20 18 26 26 C 1.53004 * 109.47339 * 274.99883 * 16 15 13 27 27 C 1.53004 * 109.46848 * 65.00394 * 26 16 15 28 28 H 1.08998 * 109.47509 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47757 * 300.00428 * 1 2 3 30 30 H 1.09004 * 109.47210 * 60.00451 * 1 2 3 31 31 H 1.09000 * 109.47757 * 239.99572 * 2 1 3 32 32 H 1.09004 * 109.47210 * 119.99549 * 2 1 3 33 33 H 1.08995 * 109.47130 * 59.99945 * 3 2 1 34 34 H 1.09002 * 109.47030 * 299.99445 * 3 2 1 35 35 H 1.09005 * 109.46989 * 60.00128 * 4 3 2 36 36 H 1.08989 * 109.47034 * 299.99814 * 4 3 2 37 37 H 1.08994 * 110.31296 * 57.08065 * 8 7 5 38 38 H 1.09000 * 110.46522 * 294.86474 * 8 7 5 39 39 H 1.09007 * 111.34906 * 275.50829 * 10 9 8 40 40 H 1.09008 * 111.34797 * 150.78450 * 10 9 8 41 41 H 0.97002 * 119.99724 * 0.02562 * 15 13 11 42 42 H 0.97006 * 119.99269 * 180.02562 * 21 20 18 43 43 H 1.08997 * 109.47231 * 305.00005 * 26 16 15 44 44 H 1.09002 * 109.46980 * 184.99850 * 26 16 15 45 45 H 1.08998 * 109.46847 * 300.00028 * 27 26 16 46 46 H 1.08997 * 109.47522 * 59.99789 * 27 26 16 47 47 H 1.08998 * 109.46923 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0723 2.8633 0.0000 6 8 3.2842 3.7852 -0.0013 7 7 5.3974 3.1096 0.0009 8 6 6.3994 2.0373 -0.0862 9 16 8.0151 2.9043 -0.1716 10 6 7.2965 4.5247 -0.6740 11 6 5.9446 4.4616 0.0896 12 1 6.1061 4.7204 1.1360 13 6 4.9745 5.4375 -0.5250 14 8 4.4016 5.1551 -1.5560 15 7 4.7436 6.6240 0.0710 16 6 3.8010 7.5728 -0.5268 17 1 2.9816 7.0259 -0.9932 18 6 3.2537 8.4800 0.5450 19 1 3.5761 8.3618 1.5689 20 6 2.3421 9.4615 0.2182 21 7 1.9499 9.6056 -1.0288 22 14 1.6642 10.5863 1.5465 23 1 2.7809 11.3310 2.1818 24 1 0.7086 11.5481 0.9407 25 1 0.9638 9.7736 2.5734 26 6 4.5223 8.4106 -1.5846 27 6 4.9693 7.5054 -2.7343 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6767 1.9563 -0.8901 35 1 3.9336 0.9285 -0.8892 36 1 3.9329 0.9288 0.8908 37 1 6.2403 1.4430 -0.9859 38 1 6.3563 1.4027 0.7989 39 1 7.1415 4.5730 -1.7520 40 1 7.9102 5.3559 -0.3265 41 1 5.2021 6.8500 0.8954 42 1 1.3088 10.2964 -1.2588 43 1 5.3945 8.8877 -1.1375 44 1 3.8456 9.1751 -1.9661 45 1 5.6460 6.7408 -2.3527 46 1 4.0972 7.0283 -3.1813 47 1 5.4836 8.1021 -3.4876 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183840117.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:18:38 Heat of formation + Delta-G solvation = -98.237577 kcal Electronic energy + Delta-G solvation = -27338.401904 eV Core-core repulsion = 23646.325661 eV Total energy + Delta-G solvation = -3692.076243 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.76847 -39.95971 -37.56750 -36.67698 -36.22488 -34.30582 -33.21490 -32.35027 -30.97614 -29.01142 -28.26053 -26.23164 -25.29923 -24.26310 -22.50095 -21.78035 -21.23049 -20.39135 -19.09381 -18.29147 -18.01723 -17.76873 -17.15533 -16.86428 -16.22729 -16.12011 -15.95725 -15.74092 -15.15668 -14.78544 -14.65891 -14.54737 -14.45384 -14.41023 -13.80048 -13.73759 -13.49717 -13.36261 -13.19163 -13.17991 -13.08718 -12.91078 -12.67396 -12.23032 -12.20303 -12.09675 -12.06608 -11.89176 -11.76559 -11.59024 -11.47507 -11.07374 -10.79576 -10.63946 -10.49292 -9.97366 -9.55032 -8.89454 -8.16656 -6.33978 0.52037 0.84486 1.40265 1.43822 1.44421 1.51753 1.64382 2.04947 2.35700 2.62521 3.12141 3.21696 3.57493 3.74873 3.87878 3.96441 3.99661 4.16019 4.22313 4.29545 4.32465 4.44811 4.47009 4.51238 4.56496 4.58074 4.70223 4.74593 4.89779 4.98133 5.00909 5.05470 5.08905 5.24523 5.27210 5.36598 5.43373 5.48688 5.55471 5.65513 5.80066 5.95548 6.09245 6.17962 6.74403 7.00311 7.12769 7.33532 7.66196 8.88619 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.009553 B = 0.004268 C = 0.003262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2930.393565 B = 6559.465231 C = 8580.545741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.113 4.113 3 C -0.106 4.106 4 C -0.120 4.120 5 C 0.506 3.494 6 O -0.551 6.551 7 N -0.613 5.613 8 C 0.153 3.847 9 S -0.248 6.248 10 C -0.060 4.060 11 C 0.115 3.885 12 H 0.113 0.887 13 C 0.518 3.482 14 O -0.567 6.567 15 N -0.704 5.704 16 C 0.289 3.711 17 H -0.015 1.015 18 C -0.549 4.549 19 H 0.067 0.933 20 C 0.015 3.985 21 N -0.916 5.916 22 Si 0.970 3.030 23 H -0.260 1.260 24 H -0.284 1.284 25 H -0.276 1.276 26 C -0.119 4.119 27 C -0.119 4.119 28 H 0.071 0.929 29 H 0.047 0.953 30 H 0.041 0.959 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.047 0.953 34 H 0.035 0.965 35 H 0.118 0.882 36 H 0.131 0.869 37 H 0.116 0.884 38 H 0.139 0.861 39 H 0.093 0.907 40 H 0.149 0.851 41 H 0.399 0.601 42 H 0.264 0.736 43 H 0.045 0.955 44 H 0.069 0.931 45 H 0.046 0.954 46 H 0.017 0.983 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.850 -19.969 4.624 23.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.151 4.151 3 C -0.145 4.145 4 C -0.159 4.159 5 C 0.295 3.705 6 O -0.427 6.427 7 N -0.351 5.351 8 C -0.080 4.080 9 S -0.021 6.021 10 C -0.209 4.209 11 C 0.006 3.994 12 H 0.131 0.869 13 C 0.302 3.698 14 O -0.446 6.446 15 N -0.353 5.353 16 C 0.186 3.814 17 H 0.003 0.997 18 C -0.587 4.587 19 H 0.085 0.915 20 C -0.185 4.185 21 N -0.554 5.554 22 Si 0.794 3.206 23 H -0.185 1.185 24 H -0.210 1.210 25 H -0.201 1.201 26 C -0.158 4.158 27 C -0.176 4.176 28 H 0.090 0.910 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.066 0.934 34 H 0.054 0.946 35 H 0.136 0.864 36 H 0.149 0.851 37 H 0.134 0.866 38 H 0.157 0.843 39 H 0.112 0.888 40 H 0.167 0.833 41 H 0.233 0.767 42 H 0.073 0.927 43 H 0.064 0.936 44 H 0.087 0.913 45 H 0.065 0.935 46 H 0.036 0.964 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 11.018 -19.963 3.973 23.145 hybrid contribution -1.783 1.589 0.327 2.410 sum 9.236 -18.374 4.300 21.009 Atomic orbital electron populations 1.21804 0.96272 1.02194 1.01229 1.21485 0.95703 0.94383 1.03479 1.21357 0.93764 0.98103 1.01242 1.21736 0.97021 0.90237 1.06914 1.21634 0.80482 0.93640 0.74713 1.90886 1.55264 1.47876 1.48679 1.48309 1.06197 1.04920 1.75634 1.24233 0.84586 0.90941 1.08194 1.88104 1.12760 1.10766 1.90480 1.24623 0.94329 0.98517 1.03432 1.21842 0.92513 0.83598 1.01469 0.86890 1.20323 0.82436 0.82288 0.84766 1.90641 1.50983 1.76766 1.26213 1.46106 1.44769 1.17064 1.27406 1.18201 0.86039 0.85452 0.91733 0.99700 1.21561 1.26174 1.16364 0.94629 0.91467 1.25779 0.96169 0.98773 0.97783 1.70060 1.32388 1.34021 1.18942 0.85440 0.78400 0.78122 0.78619 1.18468 1.20952 1.20113 1.21765 0.98957 0.99117 0.95957 1.21639 0.99267 0.98619 0.98097 0.91000 0.93432 0.93961 0.90572 0.89866 0.93434 0.94561 0.86439 0.85140 0.86636 0.84347 0.88789 0.83307 0.76740 0.92666 0.93633 0.91272 0.93512 0.96367 0.93366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.77 9.91 71.98 0.71 -2.05 16 2 C -0.11 -1.79 5.93 30.59 0.18 -1.61 16 3 C -0.11 -2.53 4.50 30.60 0.14 -2.39 16 4 C -0.12 -2.28 4.68 29.85 0.14 -2.15 16 5 C 0.51 15.58 7.22 87.66 0.63 16.21 16 6 O -0.55 -24.67 12.76 19.54 0.25 -24.42 16 7 N -0.61 -15.52 3.13 -806.81 -2.53 -18.05 16 8 C 0.15 2.31 6.82 127.67 0.87 3.18 16 9 S -0.25 -4.39 23.32 -56.49 -1.32 -5.71 16 10 C -0.06 -1.32 7.04 72.81 0.51 -0.81 16 11 C 0.11 3.24 3.29 45.14 0.15 3.39 16 12 H 0.11 2.79 8.03 -2.39 -0.02 2.77 16 13 C 0.52 21.17 3.47 87.66 0.30 21.47 16 14 O -0.57 -28.24 12.01 19.58 0.24 -28.01 16 15 N -0.70 -30.77 5.02 -446.10 -2.24 -33.01 16 16 C 0.29 15.73 2.24 44.25 0.10 15.83 16 17 H -0.01 -1.00 7.58 -2.39 -0.02 -1.02 16 18 C -0.55 -30.72 8.73 25.60 0.22 -30.49 16 19 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 20 C 0.01 0.83 5.29 84.65 0.45 1.28 16 21 N -0.92 -54.73 11.29 21.45 0.24 -54.49 16 22 Si 0.97 43.89 29.54 68.60 2.03 45.91 16 23 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 24 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 25 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 26 C -0.12 -6.05 5.45 30.60 0.17 -5.88 16 27 C -0.12 -5.49 8.52 71.98 0.61 -4.88 16 28 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.05 1.32 8.10 -2.39 -0.02 1.30 16 34 H 0.04 1.11 8.10 -2.39 -0.02 1.09 16 35 H 0.12 1.66 8.01 -2.38 -0.02 1.64 16 36 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.12 1.38 8.02 -2.39 -0.02 1.36 16 38 H 0.14 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.09 2.38 8.10 -2.38 -0.02 2.36 16 40 H 0.15 2.61 8.14 -2.38 -0.02 2.59 16 41 H 0.40 14.85 8.46 -92.71 -0.78 14.06 16 42 H 0.26 14.96 8.31 -92.70 -0.77 14.19 16 43 H 0.04 2.13 8.14 -2.39 -0.02 2.11 16 44 H 0.07 3.95 5.95 -2.39 -0.01 3.94 16 45 H 0.05 2.02 5.65 -2.39 -0.01 2.01 16 46 H 0.02 0.91 7.85 -2.39 -0.02 0.89 16 47 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -80.66 382.80 2.03 -78.63 By element: Atomic # 1 Polarization: 27.87 SS G_CDS: 0.17 Total: 28.04 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: 5.19 Total: 11.11 kcal Atomic # 7 Polarization: -101.02 SS G_CDS: -4.52 Total: -105.54 kcal Atomic # 8 Polarization: -52.92 SS G_CDS: 0.48 Total: -52.43 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Atomic # 16 Polarization: -4.39 SS G_CDS: -1.32 Total: -5.71 kcal Total: -80.66 2.03 -78.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183840117.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.607 kcal (2) G-P(sol) polarization free energy of solvation -80.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds