Wall clock time and date at job start Tue Mar 31 2020 14:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50692 * 109.47085 * 2 1 4 4 C 1.38154 * 126.31459 * 84.82428 * 3 2 1 5 5 C 1.47264 * 126.41917 * 0.02562 * 4 3 2 6 6 O 1.21532 * 120.00194 * 359.97438 * 5 4 3 7 7 O 1.34763 * 119.99596 * 180.02562 * 5 4 3 8 8 C 1.45203 * 116.99728 * 180.02562 * 7 5 4 9 9 H 1.09007 * 109.46732 * 329.99674 * 8 7 5 10 10 C 1.50701 * 109.47055 * 210.00062 * 8 7 5 11 11 H 1.08004 * 119.99759 * 359.97438 * 10 8 7 12 12 C 1.37871 * 120.00192 * 179.72575 * 10 8 7 13 13 N 1.31521 * 120.00009 * 0.27026 * 12 10 8 14 14 Si 1.86794 * 120.00250 * 180.27331 * 12 10 8 15 15 H 1.48499 * 109.47311 * 59.99394 * 14 12 10 16 16 H 1.48501 * 109.47312 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.46934 * 299.99950 * 14 12 10 18 18 C 1.52994 * 109.47344 * 89.99822 * 8 7 5 19 19 C 1.53002 * 109.47136 * 294.99983 * 18 8 7 20 20 C 1.41389 * 107.15515 * 180.28022 * 4 3 2 21 21 N 1.30459 * 108.05454 * 359.55358 * 20 4 3 22 22 N 1.34502 * 126.31761 * 264.84100 * 3 2 1 23 23 C 1.40150 * 125.75774 * 359.95345 * 22 3 2 24 24 C 1.38846 * 120.06677 * 315.40390 * 23 22 3 25 25 C 1.38119 * 119.93014 * 179.70348 * 24 23 22 26 26 C 1.38280 * 120.07040 * 0.57140 * 25 24 23 27 27 C 1.38284 * 120.13061 * 359.72957 * 26 25 24 28 28 C 1.38110 * 120.07083 * 359.97040 * 27 26 25 29 29 H 1.08992 * 109.47460 * 304.99622 * 1 2 3 30 30 H 1.09007 * 109.46676 * 64.99739 * 1 2 3 31 31 H 1.09000 * 109.47457 * 184.99232 * 1 2 3 32 32 H 1.09003 * 109.47170 * 239.99961 * 2 1 3 33 33 H 1.09000 * 109.46606 * 120.00275 * 2 1 3 34 34 H 0.96990 * 119.99822 * 180.02562 * 13 12 10 35 35 H 1.09001 * 109.47387 * 54.99506 * 18 8 7 36 36 H 1.09004 * 109.47379 * 175.00206 * 18 8 7 37 37 H 1.09001 * 109.47462 * 180.02562 * 19 18 8 38 38 H 1.09004 * 109.47305 * 299.99851 * 19 18 8 39 39 H 1.08998 * 109.47351 * 59.99458 * 19 18 8 40 40 H 1.07998 * 125.96958 * 179.73546 * 20 4 3 41 41 H 1.08000 * 120.03445 * 0.02562 * 24 23 22 42 42 H 1.07998 * 119.96591 * 180.30030 * 25 24 23 43 43 H 1.07998 * 119.93598 * 179.74370 * 26 25 24 44 44 H 1.08003 * 119.95976 * 179.97438 * 27 26 25 45 45 H 1.08004 * 120.03522 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.2104 2.2256 1.1087 5 6 1.9456 1.8556 2.5093 6 8 1.5277 0.7460 2.7761 7 8 2.1657 2.7478 3.4950 8 6 1.8833 2.3142 4.8517 9 1 1.0785 1.5791 4.8380 10 6 1.4657 3.5008 5.6816 11 1 1.4178 4.4827 5.2342 12 6 1.1399 3.3322 7.0106 13 7 1.1986 2.1366 7.5555 14 14 0.6149 4.8017 8.0373 15 1 -0.6026 5.4107 7.4439 16 1 0.3203 4.3573 9.4233 17 1 1.7092 5.8054 8.0608 18 6 3.1390 1.6846 5.4577 19 6 3.4911 0.4087 4.6901 20 6 2.6888 3.4730 0.6459 21 7 2.7970 3.4081 -0.6525 22 7 2.3897 2.1393 -1.0794 23 6 2.3599 1.6924 -2.4073 24 6 2.8441 0.4312 -2.7279 25 6 2.8077 -0.0088 -4.0366 26 6 2.3005 0.8098 -5.0290 27 6 1.8233 2.0688 -4.7138 28 6 1.8513 2.5121 -3.4060 29 1 -0.3634 0.5893 0.8418 30 1 -0.3633 0.4344 -0.9314 31 1 -0.3634 -1.0237 0.0894 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 0.9690 2.0180 8.4903 35 1 3.9677 2.3894 5.3903 36 1 2.9543 1.4399 6.5037 37 1 4.3855 -0.0402 5.1221 38 1 2.6625 -0.2963 4.7575 39 1 3.6758 0.6533 3.6441 40 1 2.9262 4.3289 1.2604 41 1 3.2440 -0.2071 -1.9539 42 1 3.1797 -0.9916 -4.2859 43 1 2.2769 0.4651 -6.0522 44 1 1.4282 2.7061 -5.4911 45 1 1.4780 3.4954 -3.1604 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188018510.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:29 Heat of formation + Delta-G solvation = -6.562949 kcal Electronic energy + Delta-G solvation = -27839.612122 eV Core-core repulsion = 24016.067238 eV Total energy + Delta-G solvation = -3823.544884 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.99398 -40.96209 -39.92076 -37.50369 -35.61270 -35.24072 -34.37195 -33.29987 -32.03862 -30.65038 -30.31984 -29.18873 -26.07875 -25.05149 -24.28519 -23.90833 -23.41857 -22.15936 -21.38501 -20.64154 -19.15473 -18.65257 -17.86551 -17.49747 -17.16120 -16.94414 -16.59669 -16.34914 -15.95641 -15.51181 -15.22958 -15.08238 -14.80989 -14.71347 -14.47488 -14.28244 -14.00584 -13.74880 -13.43441 -13.34342 -13.28034 -13.08384 -12.79521 -12.72263 -12.67867 -12.52527 -12.30132 -12.26141 -12.12697 -11.78011 -11.71442 -11.38298 -11.17336 -11.12272 -10.77623 -10.48780 -10.13195 -10.04687 -9.47349 -8.24420 -6.40403 -0.28929 0.28804 0.49945 0.96814 1.07346 1.42798 1.46169 1.54077 2.12697 2.20988 2.45764 2.66305 3.05121 3.27805 3.52901 3.69267 3.84883 3.87288 4.00625 4.18343 4.19478 4.26817 4.37240 4.41055 4.43681 4.44272 4.45235 4.49928 4.66766 4.69414 4.85784 4.89234 4.97136 5.03598 5.11751 5.15122 5.20157 5.26836 5.31622 5.33038 5.44611 5.46254 5.55240 5.68087 5.71681 6.01092 6.02612 6.18068 6.30466 6.64650 7.09774 7.31926 8.82248 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.023890 B = 0.002801 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.738583 B = 9992.383615 C =10452.612234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.072 4.072 3 C 0.175 3.825 4 C -0.295 4.295 5 C 0.530 3.470 6 O -0.538 6.538 7 O -0.360 6.360 8 C 0.229 3.771 9 H 0.010 0.990 10 C -0.549 4.549 11 H 0.064 0.936 12 C 0.019 3.981 13 N -0.914 5.914 14 Si 0.978 3.022 15 H -0.270 1.270 16 H -0.277 1.277 17 H -0.265 1.265 18 C -0.129 4.129 19 C -0.127 4.127 20 C 0.108 3.892 21 N -0.309 5.309 22 N -0.311 5.311 23 C 0.109 3.891 24 C -0.131 4.131 25 C -0.096 4.096 26 C -0.106 4.106 27 C -0.101 4.101 28 C -0.118 4.118 29 H 0.034 0.966 30 H 0.060 0.940 31 H 0.089 0.911 32 H 0.111 0.889 33 H 0.096 0.904 34 H 0.270 0.730 35 H 0.043 0.957 36 H 0.086 0.914 37 H 0.059 0.941 38 H 0.039 0.961 39 H 0.034 0.966 40 H 0.214 0.786 41 H 0.137 0.863 42 H 0.165 0.835 43 H 0.164 0.836 44 H 0.158 0.842 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.391 -5.080 -25.837 26.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.110 4.110 3 C 0.044 3.956 4 C -0.308 4.308 5 C 0.376 3.624 6 O -0.430 6.430 7 O -0.277 6.277 8 C 0.176 3.824 9 H 0.027 0.973 10 C -0.587 4.587 11 H 0.082 0.918 12 C -0.181 4.181 13 N -0.551 5.551 14 Si 0.801 3.199 15 H -0.196 1.196 16 H -0.202 1.202 17 H -0.190 1.190 18 C -0.167 4.167 19 C -0.185 4.185 20 C -0.080 4.080 21 N -0.126 5.126 22 N -0.083 5.083 23 C 0.020 3.980 24 C -0.151 4.151 25 C -0.114 4.114 26 C -0.124 4.124 27 C -0.120 4.120 28 C -0.138 4.138 29 H 0.053 0.947 30 H 0.079 0.921 31 H 0.108 0.892 32 H 0.129 0.871 33 H 0.114 0.886 34 H 0.079 0.921 35 H 0.061 0.939 36 H 0.105 0.895 37 H 0.078 0.922 38 H 0.058 0.942 39 H 0.053 0.947 40 H 0.230 0.770 41 H 0.154 0.846 42 H 0.182 0.818 43 H 0.182 0.818 44 H 0.175 0.825 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.583 -4.847 -26.695 27.254 hybrid contribution -0.517 0.468 2.101 2.214 sum 2.066 -4.379 -24.594 25.066 Atomic orbital electron populations 1.21576 0.92656 1.03628 1.01239 1.20729 0.97894 0.86795 1.05607 1.21889 0.92565 0.95908 0.85236 1.19309 1.22830 0.97998 0.90635 1.20170 0.73829 0.82588 0.85769 1.90719 1.44671 1.22749 1.84876 1.86499 1.78133 1.44270 1.18767 1.20346 0.93844 0.95071 0.73127 0.97269 1.21302 1.47396 0.94479 0.95483 0.91771 1.25756 0.94671 0.99500 0.98196 1.70004 1.47871 1.23253 1.14014 0.85308 0.79000 0.78440 0.77111 1.19556 1.20160 1.18959 1.21855 0.96920 0.95668 1.02216 1.21689 1.00329 0.97728 0.98731 1.24543 0.94171 0.97791 0.91483 1.77288 1.23745 0.98394 1.13140 1.45720 1.48008 1.09796 1.04824 1.17880 1.04271 0.96261 0.79594 1.21361 1.00305 0.94226 0.99248 1.21442 0.97988 1.01462 0.90496 1.21760 0.96110 0.93230 1.01299 1.21430 0.98548 0.97221 0.94778 1.21179 0.99486 0.99835 0.93288 0.94669 0.92077 0.89235 0.87071 0.88566 0.92064 0.93868 0.89536 0.92222 0.94186 0.94693 0.76964 0.84579 0.81779 0.81802 0.82476 0.86058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.31 9.89 71.98 0.71 -2.60 16 2 C -0.07 -1.84 5.41 29.85 0.16 -1.68 16 3 C 0.17 5.46 6.08 42.13 0.26 5.72 16 4 C -0.30 -11.02 6.13 -20.15 -0.12 -11.14 16 5 C 0.53 23.87 6.40 70.20 0.45 24.32 16 6 O -0.54 -25.43 12.12 19.73 0.24 -25.19 16 7 O -0.36 -18.11 9.65 -56.74 -0.55 -18.66 16 8 C 0.23 12.75 2.25 29.85 0.07 12.82 16 9 H 0.01 0.59 7.16 -2.38 -0.02 0.57 16 10 C -0.55 -31.72 8.89 25.60 0.23 -31.50 16 11 H 0.06 3.65 7.81 -2.91 -0.02 3.63 16 12 C 0.02 1.04 5.29 84.65 0.45 1.48 16 13 N -0.91 -52.75 11.30 21.45 0.24 -52.50 16 14 Si 0.98 43.58 29.54 68.60 2.03 45.60 16 15 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 16 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 17 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 18 C -0.13 -6.61 5.49 30.59 0.17 -6.45 16 19 C -0.13 -5.71 8.57 71.98 0.62 -5.09 16 20 C 0.11 3.63 11.87 85.67 1.02 4.65 16 21 N -0.31 -9.93 12.35 -56.20 -0.69 -10.62 16 22 N -0.31 -9.00 3.66 -174.47 -0.64 -9.64 16 23 C 0.11 2.46 6.14 38.10 0.23 2.69 16 24 C -0.13 -2.20 8.29 22.39 0.19 -2.01 16 25 C -0.10 -0.98 10.04 22.25 0.22 -0.76 16 26 C -0.11 -0.91 10.04 22.29 0.22 -0.69 16 27 C -0.10 -1.21 10.04 22.25 0.22 -0.98 16 28 C -0.12 -2.27 9.86 22.39 0.22 -2.05 16 29 H 0.03 1.10 8.10 -2.39 -0.02 1.08 16 30 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 31 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.11 2.07 4.91 -2.39 -0.01 2.06 16 33 H 0.10 2.83 6.79 -2.39 -0.02 2.82 16 34 H 0.27 14.62 8.31 -92.72 -0.77 13.85 16 35 H 0.04 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.09 4.82 5.96 -2.39 -0.01 4.81 16 37 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.04 1.87 7.79 -2.39 -0.02 1.85 16 39 H 0.03 1.52 6.06 -2.39 -0.01 1.51 16 40 H 0.21 6.35 8.06 -2.91 -0.02 6.32 16 41 H 0.14 2.14 6.46 -2.91 -0.02 2.12 16 42 H 0.16 0.68 8.06 -2.91 -0.02 0.65 16 43 H 0.16 0.33 8.06 -2.91 -0.02 0.31 16 44 H 0.16 1.03 8.06 -2.91 -0.02 1.00 16 45 H 0.12 2.53 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -71.47 372.84 6.94 -64.52 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: 1.00 Total: 19.74 kcal Atomic # 6 Polarization: -18.57 SS G_CDS: 5.31 Total: -13.26 kcal Atomic # 7 Polarization: -71.68 SS G_CDS: -1.09 Total: -72.77 kcal Atomic # 8 Polarization: -43.54 SS G_CDS: -0.31 Total: -43.85 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Total: -71.47 6.94 -64.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188018510.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.961 kcal (2) G-P(sol) polarization free energy of solvation -71.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds