Wall clock time and date at job start Tue Mar 31 2020 14:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50704 * 109.47155 * 2 1 4 4 C 1.38125 * 126.29131 * 269.97569 * 3 2 1 5 5 C 1.47285 * 126.43080 * 359.77001 * 4 3 2 6 6 O 1.21523 * 119.99767 * 0.02562 * 5 4 3 7 7 O 1.34757 * 119.99957 * 179.97438 * 5 4 3 8 8 C 1.45204 * 116.99684 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.46657 * 180.02562 * 8 7 5 10 10 C 1.50705 * 109.46774 * 180.02562 * 9 8 7 11 11 H 1.08004 * 120.00142 * 359.97438 * 10 9 8 12 12 C 1.37879 * 120.00131 * 180.02562 * 10 9 8 13 13 N 1.31509 * 119.99907 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 119.99657 * 359.97438 * 12 10 9 15 15 H 1.48492 * 109.47216 * 90.00241 * 14 12 10 16 16 H 1.48496 * 109.46939 * 210.00421 * 14 12 10 17 17 H 1.48503 * 109.47255 * 330.00059 * 14 12 10 18 18 C 1.41347 * 107.14551 * 180.02562 * 4 3 2 19 19 N 1.30434 * 108.01298 * 0.02562 * 18 4 3 20 20 N 1.34221 * 126.29684 * 90.01249 * 3 2 1 21 21 C 1.46498 * 125.74232 * 359.94959 * 20 3 2 22 22 C 1.50701 * 109.47269 * 89.99958 * 21 20 3 23 23 C 1.38235 * 119.99700 * 269.72598 * 22 21 20 24 24 C 1.38242 * 119.99633 * 179.76661 * 23 22 21 25 25 C 1.38227 * 119.99925 * 0.50539 * 24 23 22 26 26 C 1.38237 * 120.00465 * 359.74723 * 25 24 23 27 27 C 1.38233 * 119.99759 * 0.02562 * 26 25 24 28 28 H 1.08999 * 109.47204 * 300.00449 * 1 2 3 29 29 H 1.09001 * 109.46667 * 60.00464 * 1 2 3 30 30 H 1.09004 * 109.46800 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47234 * 240.00046 * 2 1 3 32 32 H 1.08997 * 109.47377 * 119.99641 * 2 1 3 33 33 H 1.09002 * 109.47025 * 300.00127 * 8 7 5 34 34 H 1.09003 * 109.46916 * 60.00443 * 8 7 5 35 35 H 1.09002 * 109.47010 * 299.99527 * 9 8 7 36 36 H 1.08995 * 109.47747 * 59.99973 * 9 8 7 37 37 H 0.97005 * 119.99413 * 179.97438 * 13 12 10 38 38 H 1.07997 * 125.99729 * 179.97438 * 18 4 3 39 39 H 1.09001 * 109.46702 * 209.99804 * 21 20 3 40 40 H 1.08996 * 109.47376 * 329.99388 * 21 20 3 41 41 H 1.08001 * 120.00026 * 359.97438 * 23 22 21 42 42 H 1.08002 * 119.99807 * 180.23091 * 24 23 22 43 43 H 1.08000 * 120.00151 * 179.72705 * 25 24 23 44 44 H 1.07998 * 120.00280 * 179.97438 * 26 25 24 45 45 H 1.08000 * 119.99957 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3053 2.1915 -1.1133 5 6 2.1645 1.7773 -2.5197 6 8 1.7733 0.6583 -2.7873 7 8 2.4686 2.6395 -3.5097 8 6 2.3066 2.1629 -4.8717 9 6 2.6976 3.2724 -5.8500 10 6 2.5288 2.7781 -7.2636 11 1 2.1782 1.7730 -7.4460 12 6 2.8231 3.6086 -8.3242 13 7 2.6763 3.1770 -9.5577 14 14 3.4303 5.3468 -8.0087 15 1 4.9126 5.3449 -7.9207 16 1 3.0016 6.2306 -9.1224 17 1 2.8592 5.8466 -6.7323 18 6 2.7508 3.4503 -0.6497 19 7 2.7425 3.4258 0.6544 20 7 2.2974 2.1699 1.0818 21 6 2.1461 1.7442 2.4754 22 6 3.4335 1.1237 2.9537 23 6 3.6412 -0.2353 2.8090 24 6 4.8241 -0.8038 3.2434 25 6 5.7947 -0.0150 3.8319 26 6 5.5849 1.3432 3.9813 27 6 4.4040 1.9124 3.5427 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.9469 1.2955 -5.0317 34 1 1.2664 1.8822 -5.0370 35 1 2.0575 4.1401 -5.6901 36 1 3.7378 3.5529 -5.6846 37 1 2.8830 3.7615 -10.3038 38 1 3.0470 4.2855 -1.2670 39 1 1.9070 2.6083 3.0952 40 1 1.3416 1.0124 2.5464 41 1 2.8808 -0.8523 2.3536 42 1 4.9880 -1.8649 3.1270 43 1 6.7171 -0.4597 4.1752 44 1 6.3431 1.9594 4.4414 45 1 4.2399 2.9734 3.6598 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193336569.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:56 Heat of formation + Delta-G solvation = 1.431966 kcal Electronic energy + Delta-G solvation = -26874.167782 eV Core-core repulsion = 23050.969584 eV Total energy + Delta-G solvation = -3823.198198 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.72718 -39.70575 -39.31550 -36.03684 -34.87508 -33.84590 -33.23893 -31.35832 -31.13828 -30.62789 -29.49265 -27.03245 -25.27140 -24.11954 -23.06911 -22.59661 -22.22620 -20.81583 -20.43741 -19.44741 -17.88011 -17.30291 -16.79792 -16.19371 -16.05591 -15.82793 -15.77170 -15.32551 -15.07473 -14.54406 -14.44630 -14.16466 -13.84656 -13.63355 -13.39881 -13.16573 -13.09695 -12.98696 -12.73363 -12.55718 -12.39049 -11.89853 -11.72081 -11.59023 -11.43407 -11.29173 -11.20851 -10.80182 -10.62879 -10.41460 -9.90418 -9.82849 -9.62089 -9.61007 -9.36888 -9.32672 -9.29536 -8.76946 -8.58319 -6.09183 -4.09833 0.70340 0.95596 1.33327 2.09832 2.16592 3.30483 3.31657 3.37959 3.38971 3.42894 3.43667 4.07927 4.13305 4.24845 4.41282 4.42471 4.54654 4.62677 4.73041 4.82967 4.92919 5.01140 5.05540 5.13862 5.15578 5.24156 5.24725 5.43003 5.47162 5.55135 5.59559 5.72763 5.93149 5.97708 6.00829 6.05890 6.06153 6.07195 6.08115 6.34613 6.50722 6.53659 6.61496 6.91459 7.27243 7.29663 7.42625 7.67481 8.32624 8.44118 8.92928 9.50788 11.03423 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018179 B = 0.002405 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.880207 B =11640.162822 C =12134.546052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.075 4.075 3 C 0.167 3.833 4 C -0.276 4.276 5 C 0.538 3.462 6 O -0.524 6.524 7 O -0.357 6.357 8 C 0.086 3.914 9 C -0.010 4.010 10 C -0.526 4.526 11 H 0.075 0.925 12 C 0.071 3.929 13 N -0.898 5.898 14 Si 0.881 3.119 15 H -0.275 1.275 16 H -0.287 1.287 17 H -0.262 1.262 18 C 0.106 3.894 19 N -0.300 5.300 20 N -0.355 5.355 21 C 0.171 3.829 22 C -0.120 4.120 23 C -0.102 4.102 24 C -0.121 4.121 25 C -0.109 4.109 26 C -0.122 4.122 27 C -0.089 4.089 28 H 0.049 0.951 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.113 0.887 32 H 0.075 0.925 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.028 0.972 36 H 0.024 0.976 37 H 0.265 0.735 38 H 0.198 0.802 39 H 0.108 0.892 40 H 0.104 0.896 41 H 0.125 0.875 42 H 0.126 0.874 43 H 0.124 0.876 44 H 0.125 0.875 45 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.943 -5.817 32.168 32.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.113 4.113 3 C 0.035 3.965 4 C -0.288 4.288 5 C 0.383 3.617 6 O -0.415 6.415 7 O -0.274 6.274 8 C 0.013 3.987 9 C -0.047 4.047 10 C -0.563 4.563 11 H 0.093 0.907 12 C -0.131 4.131 13 N -0.536 5.536 14 Si 0.708 3.292 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.187 1.187 18 C -0.082 4.082 19 N -0.118 5.118 20 N -0.134 5.134 21 C 0.051 3.949 22 C -0.121 4.121 23 C -0.121 4.121 24 C -0.139 4.139 25 C -0.127 4.127 26 C -0.140 4.140 27 C -0.107 4.107 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.131 0.869 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.046 0.954 36 H 0.042 0.958 37 H 0.075 0.925 38 H 0.215 0.785 39 H 0.127 0.873 40 H 0.122 0.878 41 H 0.143 0.857 42 H 0.144 0.856 43 H 0.142 0.858 44 H 0.143 0.857 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 1.056 -5.418 33.064 33.522 hybrid contribution 0.296 0.420 -0.878 1.018 sum 1.353 -4.998 32.186 32.600 Atomic orbital electron populations 1.21666 0.93202 1.02701 1.02416 1.20588 0.97272 0.88471 1.05010 1.21456 0.94237 0.94570 0.86216 1.19195 1.21797 0.96961 0.90866 1.19865 0.73808 0.82752 0.85232 1.90759 1.44601 1.21281 1.84868 1.86521 1.78614 1.44449 1.17774 1.23341 1.01436 0.99303 0.74619 1.19625 0.97287 0.94288 0.93520 1.20855 1.46005 1.01746 0.87741 0.90659 1.24938 0.94735 0.98547 0.94844 1.69899 1.48647 1.36828 0.98254 0.86752 0.79544 0.84582 0.78354 1.20087 1.21248 1.18678 1.24228 0.95185 0.97372 0.91416 1.77214 1.22253 0.99039 1.13298 1.48457 1.49745 1.09811 1.05339 1.20630 0.95476 1.00923 0.77916 1.19954 0.96665 0.94131 1.01320 1.21162 0.97856 0.94195 0.98839 1.21176 0.93744 1.00230 0.98792 1.21271 0.99093 0.94061 0.98289 1.21203 0.97354 0.95258 1.00229 1.21110 0.93124 0.99816 0.96689 0.93149 0.91399 0.91266 0.86866 0.90687 0.91800 0.91746 0.95379 0.95816 0.92493 0.78487 0.87334 0.87768 0.85729 0.85623 0.85802 0.85705 0.85575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.89 37.16 0.37 -0.91 16 2 C -0.07 -0.75 5.40 -27.88 -0.15 -0.90 16 3 C 0.17 2.08 6.26 -81.59 -0.51 1.57 16 4 C -0.28 -4.16 6.13 -105.08 -0.64 -4.81 16 5 C 0.54 9.75 7.95 34.41 0.27 10.03 16 6 O -0.52 -10.16 14.63 -19.28 -0.28 -10.44 16 7 O -0.36 -7.07 10.07 -40.65 -0.41 -7.48 16 8 C 0.09 1.87 5.41 37.16 0.20 2.07 16 9 C -0.01 -0.24 4.42 -27.88 -0.12 -0.36 16 10 C -0.53 -15.08 9.66 -34.44 -0.33 -15.41 16 11 H 0.08 2.31 7.99 -52.48 -0.42 1.89 16 12 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 13 N -0.90 -27.59 13.96 55.43 0.77 -26.82 16 14 Si 0.88 21.64 27.47 -169.99 -4.67 16.97 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 17 H -0.26 -6.20 6.54 56.52 0.37 -5.83 16 18 C 0.11 1.46 11.87 -16.96 -0.20 1.26 16 19 N -0.30 -3.93 12.50 30.87 0.39 -3.55 16 20 N -0.36 -3.95 3.56 -57.76 -0.21 -4.16 16 21 C 0.17 1.27 6.15 -5.19 -0.03 1.24 16 22 C -0.12 -0.95 5.46 -104.62 -0.57 -1.52 16 23 C -0.10 -0.75 9.46 -39.58 -0.37 -1.13 16 24 C -0.12 -0.86 10.05 -39.58 -0.40 -1.26 16 25 C -0.11 -0.76 10.05 -39.59 -0.40 -1.16 16 26 C -0.12 -0.90 10.05 -39.58 -0.40 -1.29 16 27 C -0.09 -0.71 9.70 -39.58 -0.38 -1.09 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.11 1.38 6.49 -51.93 -0.34 1.04 16 32 H 0.07 0.54 5.26 -51.93 -0.27 0.27 16 33 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 34 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 35 H 0.03 0.68 7.20 -51.93 -0.37 0.31 16 36 H 0.02 0.57 7.57 -51.93 -0.39 0.18 16 37 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 38 H 0.20 2.37 8.06 -52.49 -0.42 1.95 16 39 H 0.11 0.68 8.09 -51.93 -0.42 0.26 16 40 H 0.10 0.54 7.56 -51.93 -0.39 0.14 16 41 H 0.12 0.72 5.95 -52.49 -0.31 0.41 16 42 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 43 H 0.12 0.62 8.06 -52.49 -0.42 0.19 16 44 H 0.12 0.69 8.06 -52.49 -0.42 0.26 16 45 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 381.73 15.07 5.75 5.75 Total: -1.00 -34.05 381.73 -8.74 -42.79 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -6.32 Total: -1.37 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: -3.77 Total: -11.69 kcal Atomic # 7 Polarization: -35.48 SS G_CDS: 0.95 Total: -34.53 kcal Atomic # 8 Polarization: -17.23 SS G_CDS: -0.69 Total: -17.92 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.05 -8.74 -42.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193336569.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.220 kcal (2) G-P(sol) polarization free energy of solvation -34.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.788 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds