Wall clock time and date at job start Tue Mar 31 2020 14:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50704 * 109.47155 * 2 1 4 4 C 1.38125 * 126.29131 * 269.97569 * 3 2 1 5 5 C 1.47285 * 126.43080 * 359.77001 * 4 3 2 6 6 O 1.21523 * 119.99767 * 0.02562 * 5 4 3 7 7 O 1.34757 * 119.99957 * 179.97438 * 5 4 3 8 8 C 1.45204 * 116.99684 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.46657 * 180.02562 * 8 7 5 10 10 C 1.50705 * 109.46774 * 180.02562 * 9 8 7 11 11 H 1.08004 * 120.00142 * 359.97438 * 10 9 8 12 12 C 1.37879 * 120.00131 * 180.02562 * 10 9 8 13 13 N 1.31509 * 119.99907 * 179.97438 * 12 10 9 14 14 Si 1.86801 * 119.99657 * 359.97438 * 12 10 9 15 15 H 1.48492 * 109.47216 * 90.00241 * 14 12 10 16 16 H 1.48496 * 109.46939 * 210.00421 * 14 12 10 17 17 H 1.48503 * 109.47255 * 330.00059 * 14 12 10 18 18 C 1.41347 * 107.14551 * 180.02562 * 4 3 2 19 19 N 1.30434 * 108.01298 * 0.02562 * 18 4 3 20 20 N 1.34221 * 126.29684 * 90.01249 * 3 2 1 21 21 C 1.46498 * 125.74232 * 359.94959 * 20 3 2 22 22 C 1.50701 * 109.47269 * 89.99958 * 21 20 3 23 23 C 1.38235 * 119.99700 * 269.72598 * 22 21 20 24 24 C 1.38242 * 119.99633 * 179.76661 * 23 22 21 25 25 C 1.38227 * 119.99925 * 0.50539 * 24 23 22 26 26 C 1.38237 * 120.00465 * 359.74723 * 25 24 23 27 27 C 1.38233 * 119.99759 * 0.02562 * 26 25 24 28 28 H 1.08999 * 109.47204 * 300.00449 * 1 2 3 29 29 H 1.09001 * 109.46667 * 60.00464 * 1 2 3 30 30 H 1.09004 * 109.46800 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47234 * 240.00046 * 2 1 3 32 32 H 1.08997 * 109.47377 * 119.99641 * 2 1 3 33 33 H 1.09002 * 109.47025 * 300.00127 * 8 7 5 34 34 H 1.09003 * 109.46916 * 60.00443 * 8 7 5 35 35 H 1.09002 * 109.47010 * 299.99527 * 9 8 7 36 36 H 1.08995 * 109.47747 * 59.99973 * 9 8 7 37 37 H 0.97005 * 119.99413 * 179.97438 * 13 12 10 38 38 H 1.07997 * 125.99729 * 179.97438 * 18 4 3 39 39 H 1.09001 * 109.46702 * 209.99804 * 21 20 3 40 40 H 1.08996 * 109.47376 * 329.99388 * 21 20 3 41 41 H 1.08001 * 120.00026 * 359.97438 * 23 22 21 42 42 H 1.08002 * 119.99807 * 180.23091 * 24 23 22 43 43 H 1.08000 * 120.00151 * 179.72705 * 25 24 23 44 44 H 1.07998 * 120.00280 * 179.97438 * 26 25 24 45 45 H 1.08000 * 119.99957 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3053 2.1915 -1.1133 5 6 2.1645 1.7773 -2.5197 6 8 1.7733 0.6583 -2.7873 7 8 2.4686 2.6395 -3.5097 8 6 2.3066 2.1629 -4.8717 9 6 2.6976 3.2724 -5.8500 10 6 2.5288 2.7781 -7.2636 11 1 2.1782 1.7730 -7.4460 12 6 2.8231 3.6086 -8.3242 13 7 2.6763 3.1770 -9.5577 14 14 3.4303 5.3468 -8.0087 15 1 4.9126 5.3449 -7.9207 16 1 3.0016 6.2306 -9.1224 17 1 2.8592 5.8466 -6.7323 18 6 2.7508 3.4503 -0.6497 19 7 2.7425 3.4258 0.6544 20 7 2.2974 2.1699 1.0818 21 6 2.1461 1.7442 2.4754 22 6 3.4335 1.1237 2.9537 23 6 3.6412 -0.2353 2.8090 24 6 4.8241 -0.8038 3.2434 25 6 5.7947 -0.0150 3.8319 26 6 5.5849 1.3432 3.9813 27 6 4.4040 1.9124 3.5427 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 2.9469 1.2955 -5.0317 34 1 1.2664 1.8822 -5.0370 35 1 2.0575 4.1401 -5.6901 36 1 3.7378 3.5529 -5.6846 37 1 2.8830 3.7615 -10.3038 38 1 3.0470 4.2855 -1.2670 39 1 1.9070 2.6083 3.0952 40 1 1.3416 1.0124 2.5464 41 1 2.8808 -0.8523 2.3536 42 1 4.9880 -1.8649 3.1270 43 1 6.7171 -0.4597 4.1752 44 1 6.3431 1.9594 4.4414 45 1 4.2399 2.9734 3.6598 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193336569.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:55 Heat of formation + Delta-G solvation = -16.863182 kcal Electronic energy + Delta-G solvation = -26874.961119 eV Core-core repulsion = 23050.969584 eV Total energy + Delta-G solvation = -3823.991535 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.71115 -40.94586 -40.08891 -37.58008 -35.69301 -35.32309 -34.63905 -32.80859 -31.86721 -31.72129 -30.52451 -27.94082 -26.96314 -25.09075 -23.80916 -23.59407 -22.91442 -22.54635 -21.66384 -20.46085 -19.26109 -18.65046 -17.93238 -17.46886 -17.41301 -16.89591 -16.65303 -16.29019 -16.04418 -15.84805 -15.40309 -15.27941 -14.96694 -14.87969 -14.40382 -14.30427 -14.22426 -14.03133 -13.56517 -13.37357 -13.34126 -13.25720 -13.11509 -12.76203 -12.45482 -12.39098 -12.30945 -12.18724 -11.89664 -11.80189 -11.69681 -11.51711 -11.38508 -11.30763 -10.79501 -10.50759 -9.91647 -9.89256 -9.80435 -8.32857 -6.40490 0.09950 0.29980 0.43130 0.98472 1.32219 1.39449 1.40971 1.53996 1.90797 2.14416 2.35940 2.82804 3.02077 3.36414 3.41479 3.57948 3.73432 3.84610 3.93003 4.05811 4.20956 4.22129 4.25065 4.25253 4.26579 4.35774 4.36506 4.52461 4.55032 4.59934 4.68219 4.71652 4.92125 4.98671 5.04285 5.08561 5.15702 5.27494 5.31525 5.32191 5.47259 5.52163 5.53165 5.55980 5.61966 5.75933 6.01410 6.17817 6.42247 6.65304 6.85956 7.24398 8.83176 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.018179 B = 0.002405 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.880207 B =11640.162822 C =12134.546052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.073 4.073 3 C 0.180 3.820 4 C -0.310 4.310 5 C 0.536 3.464 6 O -0.544 6.544 7 O -0.359 6.359 8 C 0.098 3.902 9 C -0.003 4.003 10 C -0.540 4.540 11 H 0.036 0.964 12 C 0.012 3.988 13 N -0.944 5.944 14 Si 0.953 3.047 15 H -0.264 1.264 16 H -0.281 1.281 17 H -0.244 1.244 18 C 0.102 3.898 19 N -0.308 5.308 20 N -0.343 5.343 21 C 0.162 3.838 22 C -0.130 4.130 23 C -0.110 4.110 24 C -0.132 4.132 25 C -0.117 4.117 26 C -0.134 4.134 27 C -0.104 4.104 28 H 0.071 0.929 29 H 0.036 0.964 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.109 0.891 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.035 0.965 36 H 0.033 0.967 37 H 0.270 0.730 38 H 0.208 0.792 39 H 0.122 0.878 40 H 0.134 0.866 41 H 0.141 0.859 42 H 0.143 0.857 43 H 0.141 0.859 44 H 0.138 0.862 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.302 -5.213 35.148 35.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.112 4.112 3 C 0.046 3.954 4 C -0.322 4.322 5 C 0.383 3.617 6 O -0.436 6.436 7 O -0.275 6.275 8 C 0.024 3.976 9 C -0.041 4.041 10 C -0.578 4.578 11 H 0.054 0.946 12 C -0.186 4.186 13 N -0.584 5.584 14 Si 0.775 3.225 15 H -0.188 1.188 16 H -0.206 1.206 17 H -0.167 1.167 18 C -0.086 4.086 19 N -0.127 5.127 20 N -0.120 5.120 21 C 0.044 3.956 22 C -0.131 4.131 23 C -0.128 4.128 24 C -0.150 4.150 25 C -0.135 4.135 26 C -0.152 4.152 27 C -0.122 4.122 28 H 0.090 0.910 29 H 0.056 0.944 30 H 0.106 0.894 31 H 0.109 0.891 32 H 0.127 0.873 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.053 0.947 36 H 0.052 0.948 37 H 0.079 0.921 38 H 0.225 0.775 39 H 0.140 0.860 40 H 0.151 0.849 41 H 0.159 0.841 42 H 0.160 0.840 43 H 0.159 0.841 44 H 0.156 0.844 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.415 -4.817 36.096 36.443 hybrid contribution 0.181 0.090 -1.677 1.690 sum 1.596 -4.727 34.418 34.778 Atomic orbital electron populations 1.21659 0.92197 1.03844 1.01945 1.20670 0.97998 0.86990 1.05534 1.21761 0.92575 0.95229 0.85835 1.19157 1.24898 0.98540 0.89627 1.20367 0.73121 0.82314 0.85908 1.90745 1.45701 1.21980 1.85173 1.86496 1.79165 1.44859 1.16978 1.22914 1.00732 0.98097 0.75847 1.19461 0.97929 0.94988 0.91685 1.21114 1.45894 1.00418 0.90389 0.94571 1.25939 0.94745 1.03622 0.94319 1.70042 1.49958 1.38900 0.99488 0.85618 0.79457 0.78318 0.79084 1.18848 1.20605 1.16722 1.24412 0.95089 0.97295 0.91805 1.77184 1.22416 1.00228 1.12829 1.48781 1.47996 1.08869 1.06396 1.21064 0.96347 1.02343 0.75874 1.20023 0.96801 0.94488 1.01806 1.21422 0.98447 0.94220 0.98757 1.21491 0.93698 1.01269 0.98507 1.21578 0.99866 0.94066 0.97967 1.21458 0.97596 0.95820 1.00325 1.21292 0.93633 1.00134 0.97180 0.90997 0.94437 0.89381 0.89145 0.87313 0.92533 0.92454 0.94656 0.94820 0.92089 0.77533 0.86003 0.84861 0.84115 0.83951 0.84109 0.84438 0.85426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.89 71.98 0.71 -1.50 16 2 C -0.07 -1.33 5.40 29.85 0.16 -1.17 16 3 C 0.18 4.20 6.26 42.17 0.26 4.47 16 4 C -0.31 -9.20 6.13 -20.16 -0.12 -9.32 16 5 C 0.54 19.62 7.95 70.20 0.56 20.18 16 6 O -0.54 -21.56 14.63 19.76 0.29 -21.27 16 7 O -0.36 -14.23 10.07 -56.67 -0.57 -14.80 16 8 C 0.10 4.34 5.41 71.98 0.39 4.73 16 9 C 0.00 -0.16 4.42 29.85 0.13 -0.02 16 10 C -0.54 -31.76 9.66 25.60 0.25 -31.52 16 11 H 0.04 2.33 7.99 -2.91 -0.02 2.31 16 12 C 0.01 0.69 5.47 84.66 0.46 1.15 16 13 N -0.94 -59.27 13.96 21.45 0.30 -58.97 16 14 Si 0.95 44.11 27.47 68.60 1.88 45.99 16 15 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 16 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 17 H -0.24 -10.50 6.54 99.48 0.65 -9.84 16 18 C 0.10 2.71 11.87 85.67 1.02 3.73 16 19 N -0.31 -7.61 12.50 -56.24 -0.70 -8.31 16 20 N -0.34 -6.89 3.56 -336.66 -1.20 -8.09 16 21 C 0.16 1.93 6.15 85.63 0.53 2.46 16 22 C -0.13 -1.75 5.46 -19.86 -0.11 -1.86 16 23 C -0.11 -1.33 9.46 22.27 0.21 -1.12 16 24 C -0.13 -1.55 10.05 22.27 0.22 -1.33 16 25 C -0.12 -1.40 10.05 22.27 0.22 -1.17 16 26 C -0.13 -1.75 10.05 22.27 0.22 -1.53 16 27 C -0.10 -1.49 9.70 22.27 0.22 -1.27 16 28 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.09 2.14 6.49 -2.39 -0.02 2.13 16 32 H 0.11 1.20 5.26 -2.39 -0.01 1.19 16 33 H 0.06 2.56 8.14 -2.39 -0.02 2.55 16 34 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 35 H 0.04 1.67 7.20 -2.39 -0.02 1.66 16 36 H 0.03 1.58 7.57 -2.39 -0.02 1.56 16 37 H 0.27 15.69 8.31 -92.70 -0.77 14.92 16 38 H 0.21 4.82 8.06 -2.91 -0.02 4.80 16 39 H 0.12 1.16 8.09 -2.39 -0.02 1.14 16 40 H 0.13 0.82 7.56 -2.39 -0.02 0.80 16 41 H 0.14 1.12 5.95 -2.91 -0.02 1.10 16 42 H 0.14 1.11 8.06 -2.91 -0.02 1.08 16 43 H 0.14 1.10 8.06 -2.91 -0.02 1.07 16 44 H 0.14 1.31 8.06 -2.91 -0.02 1.29 16 45 H 0.13 1.69 8.06 -2.91 -0.02 1.66 16 Total: -1.00 -75.06 381.73 6.28 -68.78 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: 0.94 Total: 11.76 kcal Atomic # 6 Polarization: -20.43 SS G_CDS: 5.34 Total: -15.10 kcal Atomic # 7 Polarization: -73.77 SS G_CDS: -1.60 Total: -75.37 kcal Atomic # 8 Polarization: -35.79 SS G_CDS: -0.28 Total: -36.07 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.88 Total: 45.99 kcal Total: -75.06 6.28 -68.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193336569.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.922 kcal (2) G-P(sol) polarization free energy of solvation -75.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds