Wall clock time and date at job start Tue Mar 31 2020 15:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47164 * 2 1 4 4 C 1.52992 * 109.47107 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47132 * 179.97438 * 4 3 2 6 6 N 1.46500 * 109.46955 * 179.97438 * 5 4 3 7 7 C 1.34778 * 119.99739 * 179.97438 * 6 5 4 8 8 O 1.21279 * 120.00557 * 0.02562 * 7 6 5 9 9 C 1.50710 * 120.00059 * 179.97438 * 7 6 5 10 10 H 1.08994 * 109.47135 * 300.00498 * 9 7 6 11 11 C 1.47198 * 109.46721 * 60.00422 * 9 7 6 12 12 N 7.90062 * 153.41694 * 322.97445 * 2 1 3 13 13 C 1.50694 * 109.46990 * 180.02562 * 9 7 6 14 14 O 1.21244 * 120.00658 * 335.00177 * 13 9 7 15 15 C 1.47221 * 120.00015 * 155.00114 * 13 9 7 16 16 C 1.40179 * 120.04851 * 0.02562 * 15 13 9 17 17 C 1.38259 * 120.32972 * 180.02562 * 16 15 13 18 18 C 1.37793 * 120.44262 * 359.97335 * 17 16 15 19 19 C 1.40771 * 120.09920 * 0.04306 * 18 17 16 20 20 C 1.41443 * 120.16836 * 179.97438 * 19 18 17 21 21 H 1.08004 * 119.99689 * 24.36140 * 20 19 18 22 22 C 1.39933 * 120.00402 * 204.35942 * 20 19 18 23 23 N 1.30824 * 119.99799 * 17.72743 * 22 20 19 24 24 Si 1.86802 * 120.00015 * 197.72191 * 22 20 19 25 25 H 1.48491 * 109.47261 * 59.99884 * 24 22 20 26 26 H 1.48499 * 109.46890 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47134 * 299.99732 * 24 22 20 28 28 C 1.39285 * 120.05669 * 179.72642 * 15 13 9 29 29 H 1.08993 * 109.47833 * 300.00733 * 1 2 3 30 30 H 1.09009 * 109.47042 * 60.00479 * 1 2 3 31 31 H 1.08995 * 109.47271 * 179.97438 * 1 2 3 32 32 H 1.08988 * 109.47371 * 239.99233 * 2 1 3 33 33 H 1.09007 * 109.46530 * 119.99463 * 2 1 3 34 34 H 1.09003 * 109.47113 * 59.99486 * 3 2 1 35 35 H 1.08996 * 109.46939 * 299.99953 * 3 2 1 36 36 H 1.09003 * 109.47051 * 60.00064 * 4 3 2 37 37 H 1.09005 * 109.47565 * 300.00324 * 4 3 2 38 38 H 1.08998 * 109.47107 * 60.00655 * 5 4 3 39 39 H 1.08994 * 109.47387 * 300.00231 * 5 4 3 40 40 H 0.96991 * 120.00551 * 0.02562 * 6 5 4 41 41 H 1.07999 * 119.83487 * 0.02562 * 16 15 13 42 42 H 1.07996 * 119.77710 * 179.97438 * 17 16 15 43 43 H 1.08001 * 119.94911 * 180.02562 * 18 17 16 44 44 H 0.97004 * 119.99984 * 180.02562 * 23 22 20 45 45 H 1.07998 * 120.21495 * 359.97438 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 6 4.0799 2.8849 0.0000 6 7 5.5449 2.8849 0.0012 7 6 6.2188 4.0521 0.0004 8 8 5.6125 5.1025 -0.0009 9 6 7.7259 4.0521 0.0023 10 1 8.0882 3.5395 0.8933 11 6 8.2180 3.3566 -1.1981 12 7 8.5954 2.8226 -2.1290 13 6 8.2282 5.4729 0.0015 14 8 7.5337 6.3613 -0.4439 15 6 9.5623 5.7823 0.5417 16 6 10.3665 4.7560 1.0564 17 6 11.6201 5.0401 1.5656 18 6 12.0940 6.3339 1.5728 19 6 11.3017 7.3788 1.0607 20 6 11.7865 8.7075 1.0678 21 1 12.8502 8.8942 1.0820 22 6 10.8880 9.7803 1.0564 23 7 9.6362 9.5885 1.3847 24 14 11.4760 11.4860 0.5726 25 1 12.0106 11.4510 -0.8123 26 1 10.3395 12.4393 0.6412 27 1 12.5456 11.9239 1.5051 28 6 10.0300 7.0943 0.5363 29 1 -0.3634 0.5139 0.8898 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8898 33 1 1.8932 -0.5138 0.8901 34 1 1.6766 1.9564 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 3.9336 0.9285 -0.8891 37 1 3.9330 0.9287 0.8908 38 1 3.7163 3.3993 0.8896 39 1 3.7170 3.3983 -0.8904 40 1 6.0299 2.0449 0.0019 41 1 10.0050 3.7383 1.0553 42 1 12.2320 4.2425 1.9604 43 1 13.0747 6.5468 1.9721 44 1 9.0133 10.3321 1.3764 45 1 9.4169 7.8882 0.1362 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193382442.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:56:51 Heat of formation + Delta-G solvation = -45.870715 kcal Electronic energy + Delta-G solvation = -26313.106694 eV Core-core repulsion = 22487.857297 eV Total energy + Delta-G solvation = -3825.249396 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 5.63 seconds Orbital eigenvalues (eV) -40.49565 -38.63451 -37.11119 -36.63814 -36.51016 -34.59081 -33.83443 -32.16898 -30.96172 -29.80111 -29.52806 -26.34847 -25.37140 -23.25789 -22.25789 -21.62214 -21.11336 -20.82592 -19.66755 -18.46605 -17.42438 -17.04695 -16.31717 -16.18423 -15.54811 -15.23040 -14.97292 -14.75251 -14.51169 -14.20941 -13.91752 -13.79917 -13.64722 -13.38116 -13.24878 -12.99388 -12.74871 -12.72713 -12.56307 -12.44631 -12.06280 -12.06048 -11.71182 -11.52770 -11.42932 -11.21458 -11.17571 -11.13611 -10.92602 -10.82332 -10.57274 -10.20901 -9.93457 -9.77637 -9.27242 -9.25549 -8.98266 -7.75435 -7.61802 -6.87055 -4.48321 1.64704 2.24666 2.53841 2.60803 2.75443 2.99085 3.04803 3.06300 3.10740 3.31108 3.87220 3.93422 4.33033 4.35937 4.46511 4.50353 4.54822 4.68769 4.83014 4.93002 5.00359 5.15810 5.27755 5.33008 5.46794 5.50364 5.52678 5.63729 5.67563 5.74902 5.80163 5.91539 5.96391 6.08614 6.18566 6.21459 6.65918 6.88392 6.91502 7.12520 7.23054 7.26413 7.32612 7.59546 7.65735 7.85892 8.00283 8.06957 8.18555 8.40359 8.72662 8.74487 10.07869 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.019206 B = 0.002305 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.537505 B =12143.863192 C =13010.870625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.118 4.118 4 C -0.132 4.132 5 C 0.119 3.881 6 N -0.732 5.732 7 C 0.526 3.474 8 O -0.483 6.483 9 C -0.059 4.059 10 H 0.164 0.836 11 C 0.222 3.778 12 N -0.398 5.398 13 C 0.410 3.590 14 O -0.405 6.405 15 C -0.154 4.154 16 C -0.213 4.213 17 C -0.096 4.096 18 C -0.206 4.206 19 C 0.096 3.904 20 C -0.458 4.458 21 H 0.082 0.918 22 C 0.073 3.927 23 N -0.782 5.782 24 Si 0.911 3.089 25 H -0.262 1.262 26 H -0.277 1.277 27 H -0.264 1.264 28 C -0.085 4.085 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.400 0.600 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.097 0.903 44 H 0.287 0.713 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.887 -15.619 0.586 19.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.156 4.156 4 C -0.170 4.170 5 C -0.005 4.005 6 N -0.386 5.386 7 C 0.307 3.693 8 O -0.354 6.354 9 C -0.085 4.085 10 H 0.181 0.819 11 C -0.097 4.097 12 N -0.075 5.075 13 C 0.282 3.718 14 O -0.275 6.275 15 C -0.156 4.156 16 C -0.233 4.233 17 C -0.115 4.115 18 C -0.226 4.226 19 C 0.094 3.906 20 C -0.486 4.486 21 H 0.100 0.900 22 C -0.147 4.147 23 N -0.406 5.406 24 Si 0.735 3.265 25 H -0.187 1.187 26 H -0.201 1.201 27 H -0.189 1.189 28 C -0.104 4.104 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.234 0.766 41 H 0.112 0.888 42 H 0.113 0.887 43 H 0.115 0.885 44 H 0.098 0.902 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -12.421 -14.981 -1.019 19.487 hybrid contribution 0.416 0.352 0.378 0.663 sum -12.005 -14.629 -0.641 18.935 Atomic orbital electron populations 1.21780 0.95814 1.01598 1.01942 1.21523 0.95954 0.96652 1.02078 1.21533 0.94141 0.97174 1.02756 1.21824 0.96496 0.95775 1.02920 1.21408 0.78961 0.97204 1.02879 1.45966 1.07591 1.08282 1.76779 1.19598 0.87724 0.84337 0.77601 1.90875 1.68552 1.30434 1.45523 1.19584 0.94360 1.00143 0.94385 0.81946 1.27678 0.94312 0.93916 0.93756 1.81279 1.07339 1.09245 1.09632 1.21687 0.87272 0.85909 0.76901 1.90597 1.55568 1.47463 1.33898 1.19745 0.93627 0.95840 1.06345 1.20437 0.96530 0.95996 1.10337 1.20450 0.95260 0.95924 0.99826 1.21152 1.01058 0.93054 1.07361 1.17595 0.91156 0.93128 0.88765 1.19584 0.94644 0.89944 1.44478 0.89982 1.25977 0.94461 1.01911 0.92322 1.69755 1.04369 1.34729 1.31781 0.86304 0.79293 0.80473 0.80390 1.18689 1.20140 1.18896 1.21784 0.97159 0.93535 0.97950 0.92659 0.92708 0.92817 0.92017 0.91954 0.91463 0.91557 0.91255 0.91061 0.91012 0.91283 0.76565 0.88829 0.88684 0.88464 0.90179 0.84809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.91 37.16 0.37 -0.45 16 2 C -0.12 -0.68 5.93 -26.73 -0.16 -0.84 16 3 C -0.12 -0.71 5.21 -26.73 -0.14 -0.85 16 4 C -0.13 -0.83 5.33 -26.74 -0.14 -0.97 16 5 C 0.12 1.09 5.67 -4.04 -0.02 1.07 16 6 N -0.73 -7.56 5.45 -60.30 -0.33 -7.89 16 7 C 0.53 7.79 7.08 -10.98 -0.08 7.71 16 8 O -0.48 -9.41 14.51 -18.21 -0.26 -9.67 16 9 C -0.06 -0.87 2.20 -95.71 -0.21 -1.08 16 10 H 0.16 1.75 6.73 -51.93 -0.35 1.40 16 11 C 0.22 3.35 14.39 -20.71 -0.30 3.05 16 12 N -0.40 -6.53 18.55 42.22 0.78 -5.75 16 13 C 0.41 8.32 6.10 -30.66 -0.19 8.13 16 14 O -0.41 -9.66 14.66 -18.18 -0.27 -9.93 16 15 C -0.15 -3.41 5.86 -105.13 -0.62 -4.02 16 16 C -0.21 -4.16 9.37 -38.85 -0.36 -4.52 16 17 C -0.10 -1.94 10.00 -39.74 -0.40 -2.34 16 18 C -0.21 -4.69 9.78 -38.79 -0.38 -5.07 16 19 C 0.10 2.45 5.57 -106.88 -0.60 1.85 16 20 C -0.46 -11.67 9.05 -37.73 -0.34 -12.01 16 21 H 0.08 1.98 7.91 -52.48 -0.41 1.57 16 22 C 0.07 1.80 5.14 -17.35 -0.09 1.71 16 23 N -0.78 -20.16 10.96 55.55 0.61 -19.55 16 24 Si 0.91 18.44 29.60 -169.99 -5.03 13.41 16 25 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 26 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 27 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 28 C -0.08 -2.16 8.24 -38.35 -0.32 -2.48 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.05 0.29 8.14 -51.92 -0.42 -0.13 16 31 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.34 8.14 -51.94 -0.42 -0.09 16 33 H 0.06 0.33 8.14 -51.92 -0.42 -0.10 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.40 2.99 8.34 -40.82 -0.34 2.65 16 41 H 0.09 1.45 6.45 -52.49 -0.34 1.11 16 42 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 43 H 0.10 2.05 8.06 -52.49 -0.42 1.63 16 44 H 0.29 6.84 8.30 -40.82 -0.34 6.50 16 45 H 0.13 3.69 5.75 -52.49 -0.30 3.39 16 LS Contribution 389.05 15.07 5.86 5.86 Total: -1.00 -31.14 389.05 -8.98 -40.12 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -6.38 Total: 4.52 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: -3.97 Total: -11.12 kcal Atomic # 7 Polarization: -34.26 SS G_CDS: 1.06 Total: -33.19 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.53 Total: -19.60 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -5.03 Total: 13.41 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.14 -8.98 -40.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193382442.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.748 kcal (2) G-P(sol) polarization free energy of solvation -31.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.63 seconds