Wall clock time and date at job start Tue Mar 31 2020 15:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47231 * 2 1 4 4 C 1.53006 * 109.47158 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.46939 * 179.97438 * 4 3 2 6 6 N 1.46502 * 109.46858 * 179.97438 * 5 4 3 7 7 C 1.34776 * 119.99931 * 180.02562 * 6 5 4 8 8 O 1.21285 * 120.00290 * 359.97438 * 7 6 5 9 9 C 1.50700 * 119.99979 * 179.97438 * 7 6 5 10 10 H 1.09002 * 109.47197 * 60.00279 * 9 7 6 11 11 C 1.47198 * 109.47135 * 299.99413 * 9 7 6 12 12 N 7.90066 * 153.41465 * 37.02828 * 2 1 3 13 13 C 1.50706 * 109.46943 * 179.97438 * 9 7 6 14 14 O 1.21252 * 119.99753 * 30.00606 * 13 9 7 15 15 C 1.47220 * 120.00147 * 209.99810 * 13 9 7 16 16 C 1.40177 * 120.04956 * 0.02562 * 15 13 9 17 17 C 1.38257 * 120.32656 * 180.02562 * 16 15 13 18 18 C 1.37788 * 120.44655 * 359.97156 * 17 16 15 19 19 C 1.40780 * 120.09706 * 0.04860 * 18 17 16 20 20 C 1.41447 * 120.16273 * 179.97438 * 19 18 17 21 21 H 1.08000 * 120.00016 * 24.35901 * 20 19 18 22 22 C 1.39935 * 119.99839 * 204.35557 * 20 19 18 23 23 N 1.30831 * 120.00004 * 17.72539 * 22 20 19 24 24 Si 1.86801 * 120.00125 * 197.72437 * 22 20 19 25 25 H 1.48498 * 109.47116 * 60.00314 * 24 22 20 26 26 H 1.48497 * 109.47252 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.46962 * 300.00040 * 24 22 20 28 28 C 1.39285 * 120.05485 * 179.73147 * 15 13 9 29 29 H 1.08999 * 109.47171 * 60.00046 * 1 2 3 30 30 H 1.08999 * 109.47198 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47050 * 299.99528 * 1 2 3 32 32 H 1.09004 * 109.47094 * 239.99690 * 2 1 3 33 33 H 1.08999 * 109.47171 * 119.99954 * 2 1 3 34 34 H 1.08996 * 109.47533 * 60.00064 * 3 2 1 35 35 H 1.09000 * 109.47027 * 299.99502 * 3 2 1 36 36 H 1.09004 * 109.47320 * 59.99596 * 4 3 2 37 37 H 1.08999 * 109.47018 * 299.99816 * 4 3 2 38 38 H 1.09007 * 109.47033 * 60.00333 * 5 4 3 39 39 H 1.08999 * 109.47371 * 299.99913 * 5 4 3 40 40 H 0.96995 * 120.00044 * 359.97438 * 6 5 4 41 41 H 1.08000 * 119.83890 * 359.97422 * 16 15 13 42 42 H 1.08007 * 119.77406 * 180.02562 * 17 16 15 43 43 H 1.08004 * 119.95108 * 180.02562 * 18 17 16 44 44 H 0.97001 * 120.00255 * 179.97438 * 23 22 20 45 45 H 1.08001 * 120.21334 * 359.97438 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0800 2.8849 -0.0013 6 7 5.5450 2.8849 -0.0013 7 6 6.2189 4.0521 -0.0013 8 8 5.6126 5.1025 -0.0018 9 6 7.7259 4.0521 -0.0007 10 1 8.0896 3.5380 -0.8905 11 6 8.2161 3.3585 1.2016 12 7 8.5953 2.8228 2.1293 13 6 8.2283 5.4729 -0.0015 14 8 7.5728 6.3479 0.5228 15 6 9.5149 5.7985 -0.6386 16 6 10.2733 4.7878 -1.2454 17 6 11.4827 5.0870 -1.8449 18 6 11.9563 6.3809 -1.8539 19 6 11.2098 7.4102 -1.2496 20 6 11.6950 8.7388 -1.2575 21 1 12.3909 9.0550 -2.0204 22 6 11.2732 9.6435 -0.2767 23 7 10.7244 9.2036 0.8264 24 14 11.4937 11.4793 -0.5427 25 1 10.7502 11.8961 -1.7587 26 1 10.9700 12.2165 0.6352 27 1 12.9367 11.7846 -0.7156 28 6 9.9776 7.1122 -0.6449 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 3.9330 0.9287 -0.8908 37 1 3.9337 0.9285 0.8891 38 1 3.7171 3.3990 0.8888 39 1 3.7163 3.3985 -0.8913 40 1 6.0300 2.0449 -0.0005 41 1 9.9117 3.7701 -1.2438 42 1 12.0596 4.3014 -2.3102 43 1 12.9019 6.6057 -2.3249 44 1 10.4324 9.8306 1.5065 45 1 9.3949 7.8958 -0.1834 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193382453.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:01 Heat of formation + Delta-G solvation = -46.150299 kcal Electronic energy + Delta-G solvation = -26301.682463 eV Core-core repulsion = 22476.420943 eV Total energy + Delta-G solvation = -3825.261520 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.50424 -38.64595 -37.11878 -36.65287 -36.50799 -34.60720 -33.83989 -32.17742 -30.97075 -29.80374 -29.53227 -26.35668 -25.37782 -23.26266 -22.27094 -21.63283 -21.11735 -20.85128 -19.65278 -18.46610 -17.45210 -17.05732 -16.32664 -16.20089 -15.55772 -15.23875 -14.99232 -14.73260 -14.52268 -14.19854 -13.92960 -13.82115 -13.64337 -13.39000 -13.25666 -13.00180 -12.76742 -12.68560 -12.57300 -12.44936 -12.09169 -12.07087 -11.69634 -11.53297 -11.43774 -11.21407 -11.18176 -11.14238 -10.93330 -10.82321 -10.57334 -10.20203 -9.96121 -9.77721 -9.27723 -9.27391 -9.00675 -7.75833 -7.62069 -6.87474 -4.48709 1.64156 2.23989 2.55436 2.61142 2.75235 2.98821 3.04719 3.06344 3.10791 3.31595 3.87102 3.94195 4.32883 4.35277 4.46091 4.49623 4.54909 4.67961 4.82245 4.92210 4.98191 5.14993 5.26862 5.32235 5.46111 5.50011 5.51745 5.62873 5.66856 5.74476 5.79415 5.90770 5.95658 6.08393 6.18258 6.19736 6.65623 6.88048 6.91239 7.12169 7.21414 7.26151 7.34394 7.59237 7.65394 7.85628 7.99036 8.05908 8.17706 8.40086 8.72431 8.74136 10.07494 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.019777 B = 0.002274 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.441678 B =12308.653319 C =12965.519096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.118 4.118 4 C -0.132 4.132 5 C 0.119 3.881 6 N -0.732 5.732 7 C 0.528 3.472 8 O -0.487 6.487 9 C -0.060 4.060 10 H 0.163 0.837 11 C 0.221 3.779 12 N -0.397 5.397 13 C 0.411 3.589 14 O -0.408 6.408 15 C -0.154 4.154 16 C -0.214 4.214 17 C -0.096 4.096 18 C -0.206 4.206 19 C 0.096 3.904 20 C -0.457 4.457 21 H 0.082 0.918 22 C 0.073 3.927 23 N -0.784 5.784 24 Si 0.912 3.088 25 H -0.262 1.262 26 H -0.277 1.277 27 H -0.265 1.265 28 C -0.085 4.085 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.401 0.599 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.097 0.903 44 H 0.287 0.713 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.284 -15.147 -3.512 20.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.156 4.156 4 C -0.170 4.170 5 C -0.005 4.005 6 N -0.385 5.385 7 C 0.310 3.690 8 O -0.358 6.358 9 C -0.085 4.085 10 H 0.180 0.820 11 C -0.098 4.098 12 N -0.073 5.073 13 C 0.284 3.716 14 O -0.278 6.278 15 C -0.155 4.155 16 C -0.233 4.233 17 C -0.115 4.115 18 C -0.226 4.226 19 C 0.093 3.907 20 C -0.486 4.486 21 H 0.101 0.899 22 C -0.147 4.147 23 N -0.408 5.408 24 Si 0.736 3.264 25 H -0.186 1.186 26 H -0.202 1.202 27 H -0.189 1.189 28 C -0.104 4.104 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.235 0.765 41 H 0.112 0.888 42 H 0.113 0.887 43 H 0.115 0.885 44 H 0.098 0.902 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -13.647 -14.575 -1.575 20.029 hybrid contribution 0.379 0.372 -0.421 0.678 sum -13.268 -14.203 -1.996 19.538 Atomic orbital electron populations 1.21780 0.95812 1.01605 1.01937 1.21523 0.95957 0.96647 1.02086 1.21533 0.94131 0.97183 1.02750 1.21828 0.96503 0.95761 1.02939 1.21415 0.78932 0.97228 1.02883 1.45957 1.07609 1.08288 1.76682 1.19577 0.87690 0.84321 0.77452 1.90862 1.68630 1.30517 1.45787 1.19607 0.94355 1.00202 0.94357 0.81959 1.27621 0.94406 0.93946 0.93788 1.81230 1.07183 1.09252 1.09684 1.21682 0.86067 0.85788 0.78079 1.90586 1.54743 1.48402 1.34046 1.19738 0.94821 0.96059 1.04902 1.20443 0.98351 0.96314 1.08232 1.20451 0.95565 0.95948 0.99499 1.21154 1.00023 0.92516 1.08911 1.17599 0.90164 0.92995 0.89901 1.19587 1.23908 0.94343 1.10760 0.89944 1.25985 0.92888 1.01946 0.93849 1.69759 1.28511 1.37904 1.04625 0.86293 0.79722 0.81266 0.79106 1.18606 1.20179 1.18913 1.21785 0.95592 0.93896 0.99126 0.92665 0.92812 0.92703 0.91953 0.92009 0.91549 0.91473 0.91061 0.91230 0.91268 0.91001 0.76518 0.88768 0.88662 0.88453 0.90212 0.84798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.91 37.16 0.37 -0.44 16 2 C -0.12 -0.67 5.93 -26.73 -0.16 -0.83 16 3 C -0.12 -0.69 5.21 -26.73 -0.14 -0.83 16 4 C -0.13 -0.82 5.33 -26.73 -0.14 -0.96 16 5 C 0.12 1.07 5.67 -4.04 -0.02 1.05 16 6 N -0.73 -7.48 5.45 -60.29 -0.33 -7.81 16 7 C 0.53 7.75 7.07 -10.99 -0.08 7.68 16 8 O -0.49 -9.35 14.64 -17.83 -0.26 -9.61 16 9 C -0.06 -0.88 2.35 -95.71 -0.22 -1.11 16 10 H 0.16 1.73 6.46 -51.93 -0.34 1.40 16 11 C 0.22 3.43 14.39 -20.75 -0.30 3.13 16 12 N -0.40 -6.72 18.54 42.17 0.78 -5.94 16 13 C 0.41 8.37 6.01 -30.66 -0.18 8.19 16 14 O -0.41 -9.75 14.86 -17.80 -0.26 -10.02 16 15 C -0.15 -3.40 5.86 -105.13 -0.62 -4.02 16 16 C -0.21 -4.15 9.37 -38.85 -0.36 -4.51 16 17 C -0.10 -1.93 10.00 -39.74 -0.40 -2.33 16 18 C -0.21 -4.67 9.78 -38.79 -0.38 -5.05 16 19 C 0.10 2.44 5.57 -106.88 -0.60 1.85 16 20 C -0.46 -11.65 9.05 -37.73 -0.34 -11.99 16 21 H 0.08 1.98 7.91 -52.49 -0.41 1.57 16 22 C 0.07 1.80 5.14 -17.34 -0.09 1.71 16 23 N -0.78 -20.35 10.96 55.55 0.61 -19.74 16 24 Si 0.91 18.44 29.59 -169.99 -5.03 13.41 16 25 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 26 H -0.28 -5.53 7.11 56.52 0.40 -5.12 16 27 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 28 C -0.08 -2.16 8.24 -38.36 -0.32 -2.47 16 29 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.40 2.97 8.34 -40.82 -0.34 2.62 16 41 H 0.09 1.44 6.33 -52.49 -0.33 1.11 16 42 H 0.10 1.60 8.06 -52.48 -0.42 1.18 16 43 H 0.10 2.05 8.06 -52.48 -0.42 1.63 16 44 H 0.29 6.88 8.30 -40.82 -0.34 6.54 16 45 H 0.13 3.70 5.75 -52.49 -0.30 3.40 16 LS Contribution 389.03 15.07 5.86 5.86 Total: -1.00 -31.32 389.03 -8.97 -40.29 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -6.36 Total: 4.49 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: -3.98 Total: -10.94 kcal Atomic # 7 Polarization: -34.55 SS G_CDS: 1.06 Total: -33.49 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: -0.53 Total: -19.63 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -5.03 Total: 13.41 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.32 -8.97 -40.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193382453.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.862 kcal (2) G-P(sol) polarization free energy of solvation -31.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds