Wall clock time and date at job start Tue Mar 31 2020 15:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47231 * 2 1 4 4 C 1.53006 * 109.47158 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.46939 * 179.97438 * 4 3 2 6 6 N 1.46502 * 109.46858 * 179.97438 * 5 4 3 7 7 C 1.34776 * 119.99931 * 180.02562 * 6 5 4 8 8 O 1.21285 * 120.00290 * 359.97438 * 7 6 5 9 9 C 1.50700 * 119.99979 * 179.97438 * 7 6 5 10 10 H 1.09002 * 109.47197 * 60.00279 * 9 7 6 11 11 C 1.47198 * 109.47135 * 299.99413 * 9 7 6 12 12 N 7.90066 * 153.41465 * 37.02828 * 2 1 3 13 13 C 1.50706 * 109.46943 * 179.97438 * 9 7 6 14 14 O 1.21252 * 119.99753 * 30.00606 * 13 9 7 15 15 C 1.47220 * 120.00147 * 209.99810 * 13 9 7 16 16 C 1.40177 * 120.04956 * 0.02562 * 15 13 9 17 17 C 1.38257 * 120.32656 * 180.02562 * 16 15 13 18 18 C 1.37788 * 120.44655 * 359.97156 * 17 16 15 19 19 C 1.40780 * 120.09706 * 0.04860 * 18 17 16 20 20 C 1.41447 * 120.16273 * 179.97438 * 19 18 17 21 21 H 1.08000 * 120.00016 * 24.35901 * 20 19 18 22 22 C 1.39935 * 119.99839 * 204.35557 * 20 19 18 23 23 N 1.30831 * 120.00004 * 17.72539 * 22 20 19 24 24 Si 1.86801 * 120.00125 * 197.72437 * 22 20 19 25 25 H 1.48498 * 109.47116 * 60.00314 * 24 22 20 26 26 H 1.48497 * 109.47252 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.46962 * 300.00040 * 24 22 20 28 28 C 1.39285 * 120.05485 * 179.73147 * 15 13 9 29 29 H 1.08999 * 109.47171 * 60.00046 * 1 2 3 30 30 H 1.08999 * 109.47198 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47050 * 299.99528 * 1 2 3 32 32 H 1.09004 * 109.47094 * 239.99690 * 2 1 3 33 33 H 1.08999 * 109.47171 * 119.99954 * 2 1 3 34 34 H 1.08996 * 109.47533 * 60.00064 * 3 2 1 35 35 H 1.09000 * 109.47027 * 299.99502 * 3 2 1 36 36 H 1.09004 * 109.47320 * 59.99596 * 4 3 2 37 37 H 1.08999 * 109.47018 * 299.99816 * 4 3 2 38 38 H 1.09007 * 109.47033 * 60.00333 * 5 4 3 39 39 H 1.08999 * 109.47371 * 299.99913 * 5 4 3 40 40 H 0.96995 * 120.00044 * 359.97438 * 6 5 4 41 41 H 1.08000 * 119.83890 * 359.97422 * 16 15 13 42 42 H 1.08007 * 119.77406 * 180.02562 * 17 16 15 43 43 H 1.08004 * 119.95108 * 180.02562 * 18 17 16 44 44 H 0.97001 * 120.00255 * 179.97438 * 23 22 20 45 45 H 1.08001 * 120.21334 * 359.97438 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0800 2.8849 -0.0013 6 7 5.5450 2.8849 -0.0013 7 6 6.2189 4.0521 -0.0013 8 8 5.6126 5.1025 -0.0018 9 6 7.7259 4.0521 -0.0007 10 1 8.0896 3.5380 -0.8905 11 6 8.2161 3.3585 1.2016 12 7 8.5953 2.8228 2.1293 13 6 8.2283 5.4729 -0.0015 14 8 7.5728 6.3479 0.5228 15 6 9.5149 5.7985 -0.6386 16 6 10.2733 4.7878 -1.2454 17 6 11.4827 5.0870 -1.8449 18 6 11.9563 6.3809 -1.8539 19 6 11.2098 7.4102 -1.2496 20 6 11.6950 8.7388 -1.2575 21 1 12.3909 9.0550 -2.0204 22 6 11.2732 9.6435 -0.2767 23 7 10.7244 9.2036 0.8264 24 14 11.4937 11.4793 -0.5427 25 1 10.7502 11.8961 -1.7587 26 1 10.9700 12.2165 0.6352 27 1 12.9367 11.7846 -0.7156 28 6 9.9776 7.1122 -0.6449 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 3.9330 0.9287 -0.8908 37 1 3.9337 0.9285 0.8891 38 1 3.7171 3.3990 0.8888 39 1 3.7163 3.3985 -0.8913 40 1 6.0300 2.0449 -0.0005 41 1 9.9117 3.7701 -1.2438 42 1 12.0596 4.3014 -2.3102 43 1 12.9019 6.6057 -2.3249 44 1 10.4324 9.8306 1.5065 45 1 9.3949 7.8958 -0.1834 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000193382453.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:57:00 Heat of formation + Delta-G solvation = -63.088077 kcal Electronic energy + Delta-G solvation = -26302.416940 eV Core-core repulsion = 22476.420943 eV Total energy + Delta-G solvation = -3825.995997 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = -1.00 seconds Orbital eigenvalues (eV) -41.84661 -40.10240 -38.74808 -37.84670 -37.41145 -35.62470 -35.42996 -33.49087 -32.05105 -31.30765 -31.09142 -27.35015 -26.90455 -24.76870 -23.03202 -22.78622 -22.38754 -21.72029 -21.22671 -19.82388 -19.03107 -18.36466 -17.47231 -17.17367 -16.91987 -16.67994 -16.32595 -16.06740 -15.78769 -15.33958 -15.28479 -14.96234 -14.73222 -14.64405 -14.40703 -14.31805 -14.03754 -14.01202 -13.89959 -13.56978 -13.38195 -13.15313 -12.92946 -12.81298 -12.59424 -12.51958 -12.22231 -12.01146 -11.95026 -11.93062 -11.69732 -11.50931 -11.37264 -11.22143 -11.07199 -10.61122 -10.22964 -9.52310 -9.38930 -8.67931 -6.38202 -0.02272 1.00671 1.04625 1.19503 1.35979 1.40278 1.47290 1.49942 1.72477 1.94612 2.18092 2.58819 2.78565 2.92550 3.43809 3.68332 3.80274 3.87426 4.01783 4.13583 4.20833 4.32204 4.43274 4.51615 4.60978 4.64666 4.71983 4.85397 4.93299 4.94948 5.03439 5.08050 5.12173 5.19369 5.20751 5.25601 5.30419 5.37704 5.45564 5.50489 5.52778 5.83772 5.92137 6.04795 6.08455 6.28552 6.30730 6.51068 6.59834 6.88125 6.93754 7.01467 8.28792 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.019777 B = 0.002274 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.441678 B =12308.653319 C =12965.519096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.122 4.122 3 C -0.118 4.118 4 C -0.121 4.121 5 C 0.116 3.884 6 N -0.707 5.707 7 C 0.528 3.472 8 O -0.540 6.540 9 C -0.043 4.043 10 H 0.216 0.784 11 C 0.236 3.764 12 N -0.416 5.416 13 C 0.410 3.590 14 O -0.452 6.452 15 C -0.167 4.167 16 C -0.184 4.184 17 C -0.098 4.098 18 C -0.208 4.208 19 C 0.062 3.938 20 C -0.497 4.497 21 H 0.085 0.915 22 C 0.030 3.970 23 N -0.829 5.829 24 Si 0.980 3.020 25 H -0.260 1.260 26 H -0.275 1.275 27 H -0.252 1.252 28 C -0.126 4.126 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.053 0.947 39 H 0.068 0.932 40 H 0.419 0.581 41 H 0.152 0.848 42 H 0.143 0.857 43 H 0.109 0.891 44 H 0.286 0.714 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.090 -18.746 -5.002 23.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.160 4.160 3 C -0.156 4.156 4 C -0.159 4.159 5 C -0.007 4.007 6 N -0.360 5.360 7 C 0.310 3.690 8 O -0.415 6.415 9 C -0.068 4.068 10 H 0.232 0.768 11 C -0.082 4.082 12 N -0.093 5.093 13 C 0.285 3.715 14 O -0.325 6.325 15 C -0.168 4.168 16 C -0.203 4.203 17 C -0.115 4.115 18 C -0.227 4.227 19 C 0.060 3.940 20 C -0.527 4.527 21 H 0.103 0.897 22 C -0.185 4.185 23 N -0.455 5.455 24 Si 0.801 3.199 25 H -0.184 1.184 26 H -0.200 1.200 27 H -0.176 1.176 28 C -0.146 4.146 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.107 0.893 37 H 0.094 0.906 38 H 0.072 0.928 39 H 0.086 0.914 40 H 0.257 0.743 41 H 0.169 0.831 42 H 0.161 0.839 43 H 0.127 0.873 44 H 0.096 0.904 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -13.437 -18.258 -3.079 22.877 hybrid contribution 0.275 1.239 -0.013 1.269 sum -13.162 -17.019 -3.092 21.736 Atomic orbital electron populations 1.21798 0.95896 1.01872 1.01778 1.21507 0.95904 0.96128 1.02465 1.21531 0.94004 0.97627 1.02470 1.21763 0.96449 0.93580 1.04075 1.21543 0.77945 0.99228 1.02026 1.45807 1.08189 1.07720 1.74292 1.19564 0.87548 0.84693 0.77166 1.90864 1.69396 1.32629 1.48645 1.19485 0.94682 0.96467 0.96185 0.76759 1.27545 0.93802 0.93431 0.93441 1.81270 1.07872 1.10162 1.09956 1.22076 0.85030 0.87964 0.76425 1.90581 1.55653 1.50669 1.35621 1.20109 0.96111 0.95559 1.04994 1.21089 0.96970 0.97995 1.04202 1.20986 0.95979 0.95825 0.98758 1.21492 1.00169 0.93379 1.07700 1.17944 0.90777 0.94105 0.91204 1.19847 1.25521 0.95561 1.11732 0.89740 1.26823 0.92255 1.06254 0.93169 1.69867 1.30788 1.39119 1.05687 0.85275 0.80114 0.75732 0.78816 1.18392 1.19955 1.17622 1.21601 0.96243 0.95030 1.01746 0.92695 0.92344 0.93049 0.91296 0.91856 0.92229 0.91516 0.89348 0.90572 0.92832 0.91367 0.74339 0.83063 0.83908 0.87339 0.90380 0.88455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 9.91 71.98 0.71 -0.70 16 2 C -0.12 -1.06 5.93 30.59 0.18 -0.88 16 3 C -0.12 -1.18 5.21 30.60 0.16 -1.02 16 4 C -0.12 -1.16 5.33 30.60 0.16 -0.99 16 5 C 0.12 1.89 5.67 86.38 0.49 2.38 16 6 N -0.71 -12.45 5.45 -463.05 -2.52 -14.98 16 7 C 0.53 14.59 7.07 87.66 0.62 15.20 16 8 O -0.54 -20.91 14.64 19.31 0.28 -20.63 16 9 C -0.04 -1.15 2.35 -14.09 -0.03 -1.18 16 10 H 0.22 3.26 6.46 -2.39 -0.02 3.24 16 11 C 0.24 6.61 14.39 89.44 1.29 7.89 16 12 N -0.42 -12.99 18.54 20.01 0.37 -12.62 16 13 C 0.41 16.52 6.01 28.05 0.17 16.69 16 14 O -0.45 -22.60 14.86 19.41 0.29 -22.31 16 15 C -0.17 -7.25 5.86 -20.19 -0.12 -7.37 16 16 C -0.18 -6.34 9.37 22.75 0.21 -6.13 16 17 C -0.10 -3.51 10.00 22.17 0.22 -3.29 16 18 C -0.21 -9.18 9.78 22.78 0.22 -8.96 16 19 C 0.06 3.25 5.57 -21.33 -0.12 3.13 16 20 C -0.50 -26.60 9.05 23.47 0.21 -26.39 16 21 H 0.08 4.25 7.91 -2.91 -0.02 4.23 16 22 C 0.03 1.54 5.14 85.25 0.44 1.98 16 23 N -0.83 -46.13 10.96 21.82 0.24 -45.90 16 24 Si 0.98 39.64 29.59 68.60 2.03 41.67 16 25 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 26 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 27 H -0.25 -9.58 7.11 99.48 0.71 -8.88 16 28 C -0.13 -6.74 8.24 23.06 0.19 -6.55 16 29 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 39 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.42 4.40 8.34 -92.71 -0.77 3.62 16 41 H 0.15 3.48 6.33 -2.91 -0.02 3.46 16 42 H 0.14 3.85 8.06 -2.91 -0.02 3.83 16 43 H 0.11 4.44 8.06 -2.91 -0.02 4.41 16 44 H 0.29 14.81 8.30 -92.71 -0.77 14.04 16 45 H 0.10 5.85 5.75 -2.91 -0.02 5.83 16 Total: -1.00 -75.56 389.03 5.94 -69.62 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: 0.24 Total: 21.29 kcal Atomic # 6 Polarization: -21.17 SS G_CDS: 5.01 Total: -16.16 kcal Atomic # 7 Polarization: -71.57 SS G_CDS: -1.91 Total: -73.49 kcal Atomic # 8 Polarization: -43.51 SS G_CDS: 0.57 Total: -42.93 kcal Atomic # 14 Polarization: 39.64 SS G_CDS: 2.03 Total: 41.67 kcal Total: -75.56 5.94 -69.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193382453.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.533 kcal (2) G-P(sol) polarization free energy of solvation -75.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -1.00 seconds