Wall clock time and date at job start Tue Mar 31 2020 15:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47214 * 2 1 4 4 C 1.53007 * 109.47243 * 239.99945 * 2 1 3 5 5 C 1.50704 * 109.47014 * 59.99909 * 4 2 1 6 6 H 1.08001 * 119.99616 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99988 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99828 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 119.99785 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47136 * 90.00636 * 9 7 5 11 11 H 1.48502 * 109.47091 * 210.00266 * 9 7 5 12 12 H 1.48500 * 109.47198 * 329.99875 * 9 7 5 13 13 C 1.52998 * 109.46989 * 120.00020 * 2 1 3 14 14 O 1.45196 * 109.47070 * 299.99884 * 13 2 1 15 15 C 1.34745 * 116.99808 * 180.02562 * 14 13 2 16 16 O 1.21494 * 120.00074 * 359.72911 * 15 14 13 17 17 C 1.47521 * 119.99811 * 179.97438 * 15 14 13 18 18 C 1.39769 * 120.08572 * 359.73208 * 17 15 14 19 19 C 1.37704 * 119.91421 * 179.71907 * 18 17 15 20 20 C 1.39058 * 120.08513 * 0.52785 * 19 18 17 21 21 N 1.39840 * 119.91549 * 179.74216 * 20 19 18 22 22 C 1.37162 * 126.48532 * 359.73568 * 21 20 19 23 23 C 1.34625 * 106.83130 * 179.89855 * 22 21 20 24 24 N 1.34161 * 108.21334 * 0.36302 * 23 22 21 25 25 C 1.30482 * 109.36874 * 359.76901 * 24 23 22 26 26 C 1.39055 * 120.16884 * 359.76438 * 20 19 18 27 27 C 1.37706 * 120.08890 * 359.95774 * 26 20 19 28 28 H 1.08994 * 109.47260 * 299.99888 * 1 2 3 29 29 H 1.09005 * 109.47000 * 60.00333 * 1 2 3 30 30 H 1.09004 * 109.47306 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47428 * 180.02562 * 3 2 1 32 32 H 1.09006 * 109.47130 * 300.00224 * 3 2 1 33 33 H 1.09003 * 109.47043 * 59.99678 * 3 2 1 34 34 H 1.08999 * 109.47130 * 180.02562 * 4 2 1 35 35 H 1.08996 * 109.47345 * 300.00059 * 4 2 1 36 36 H 0.97005 * 120.00048 * 180.02562 * 8 7 5 37 37 H 1.09012 * 109.46921 * 179.97438 * 13 2 1 38 38 H 1.08996 * 109.47090 * 60.00252 * 13 2 1 39 39 H 1.07994 * 120.04313 * 359.96478 * 18 17 15 40 40 H 1.08002 * 119.95913 * 180.27408 * 19 18 17 41 41 H 1.08000 * 126.58477 * 0.02562 * 22 21 20 42 42 H 1.07997 * 125.89836 * 180.13424 * 23 22 21 43 43 H 1.08007 * 125.72512 * 180.02562 * 25 24 23 44 44 H 1.08009 * 119.96039 * 179.97438 * 26 20 19 45 45 H 1.07998 * 120.04588 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5377 -0.0109 -2.4798 6 1 0.9171 0.8675 -2.3806 7 6 1.8712 -0.4816 -3.7320 8 7 2.6273 -1.5509 -3.8527 9 14 1.2491 0.3994 -5.2572 10 1 2.2274 1.4410 -5.6608 11 1 1.0844 -0.5795 -6.3617 12 1 -0.0592 1.0368 -4.9616 13 6 2.0399 -0.7212 1.2492 14 8 1.5559 -0.0368 2.4347 15 6 1.9184 -0.5485 3.6274 16 8 2.6156 -1.5423 3.6754 17 6 1.4643 0.0949 4.8748 18 6 0.6626 1.2385 4.8216 19 6 0.2358 1.8329 5.9882 20 6 0.6105 1.3030 7.2181 21 7 0.1796 1.9126 8.4005 22 6 -0.6060 3.0324 8.5015 23 6 -0.7792 3.2700 9.8152 24 7 -0.1136 2.3296 10.5027 25 6 0.4647 1.5109 9.6674 26 6 1.4131 0.1689 7.2751 27 6 1.8391 -0.4345 6.1129 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 3.1300 -0.7217 -1.2490 35 1 1.6767 -1.7489 -1.2493 36 1 2.8623 -1.8819 -4.7337 37 1 3.1301 -0.7216 1.2490 38 1 1.6766 -1.7489 1.2492 39 1 0.3749 1.6533 3.8669 40 1 -0.3874 2.7141 5.9479 41 1 -1.0099 3.6112 7.6840 42 1 -1.3518 4.0800 10.2422 43 1 1.0685 0.6569 9.9372 44 1 1.7025 -0.2396 8.2321 45 1 2.4628 -1.3151 6.1579 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195055598.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:54 Heat of formation + Delta-G solvation = -7.336450 kcal Electronic energy + Delta-G solvation = -26509.131101 eV Core-core repulsion = 22685.552675 eV Total energy + Delta-G solvation = -3823.578425 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 4.53 seconds Orbital eigenvalues (eV) -42.80378 -40.59825 -39.19137 -37.23049 -35.47581 -34.61065 -32.39113 -31.92044 -30.43326 -29.80792 -27.37249 -26.55480 -26.47473 -24.82977 -23.80495 -23.04562 -21.94435 -21.06980 -20.70160 -19.18060 -18.43328 -17.85825 -16.70933 -16.24226 -16.22896 -15.95687 -15.68224 -15.42168 -14.64813 -14.59163 -14.42208 -14.17557 -13.92852 -13.88405 -13.68592 -13.24174 -13.21292 -12.93221 -12.42753 -12.38428 -12.09958 -11.66836 -11.34464 -11.11645 -11.01543 -10.87912 -10.68846 -10.65940 -10.55983 -10.38046 -10.37360 -10.25151 -9.80364 -9.67774 -9.27893 -9.23361 -8.99778 -8.82097 -8.40693 -6.04818 -4.06184 -0.04604 0.74421 1.57123 2.11624 2.44553 2.66484 2.71657 3.28479 3.33436 3.35522 3.37599 4.01731 4.09013 4.20294 4.35240 4.40282 4.48531 4.69026 4.74701 4.90846 5.07228 5.12040 5.30712 5.34459 5.38756 5.42719 5.44529 5.56645 5.75133 5.78242 5.88823 5.99232 6.05572 6.12319 6.22492 6.30272 6.43539 6.53370 6.64575 6.70185 6.71240 7.04817 7.05286 7.07584 7.48878 7.55977 7.67328 7.79003 7.93434 8.34814 8.98032 9.57071 11.06728 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.029705 B = 0.002002 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.369803 B =13979.897718 C =14725.909028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.058 4.058 3 C -0.126 4.126 4 C 0.035 3.965 5 C -0.510 4.510 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.891 3.109 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.080 3.920 14 O -0.345 6.345 15 C 0.502 3.498 16 O -0.507 6.507 17 C -0.125 4.125 18 C -0.031 4.031 19 C -0.146 4.146 20 C 0.163 3.837 21 N -0.414 5.414 22 C -0.051 4.051 23 C -0.022 4.022 24 N -0.484 5.484 25 C 0.192 3.808 26 C -0.147 4.147 27 C -0.028 4.028 28 H 0.038 0.962 29 H 0.066 0.934 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.066 0.934 33 H 0.038 0.962 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.260 0.740 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.153 0.847 40 H 0.140 0.860 41 H 0.181 0.819 42 H 0.176 0.824 43 H 0.211 0.789 44 H 0.141 0.859 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.155 7.335 24.168 25.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.059 4.059 3 C -0.183 4.183 4 C -0.002 4.002 5 C -0.549 4.549 6 H 0.079 0.921 7 C -0.146 4.146 8 N -0.534 5.534 9 Si 0.719 3.281 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C 0.007 3.993 14 O -0.261 6.261 15 C 0.346 3.654 16 O -0.397 6.397 17 C -0.127 4.127 18 C -0.050 4.050 19 C -0.166 4.166 20 C 0.069 3.931 21 N -0.094 5.094 22 C -0.180 4.180 23 C -0.167 4.167 24 N -0.201 5.201 25 C -0.089 4.089 26 C -0.167 4.167 27 C -0.046 4.046 28 H 0.057 0.943 29 H 0.085 0.915 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.085 0.915 33 H 0.057 0.943 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.171 0.829 40 H 0.157 0.843 41 H 0.198 0.802 42 H 0.193 0.807 43 H 0.227 0.773 44 H 0.159 0.841 45 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -4.835 6.866 24.813 26.195 hybrid contribution -0.191 0.293 -1.878 1.911 sum -5.027 7.159 22.934 24.546 Atomic orbital electron populations 1.21721 0.94793 1.01007 1.00819 1.20826 0.96164 0.96223 0.92642 1.21722 1.00103 0.95700 1.00816 1.19130 0.96408 0.95319 0.89382 1.21139 1.31315 1.12135 0.90268 0.92071 1.25021 0.95301 0.95083 0.99157 1.69963 1.36902 1.22993 1.23534 0.86605 0.79217 0.79385 0.82866 1.20730 1.21317 1.19873 1.23576 0.99079 0.96019 0.80635 1.86523 1.69256 1.55715 1.14592 1.20948 0.77687 0.82084 0.84664 1.90845 1.35609 1.25000 1.88240 1.19340 1.03467 0.98441 0.91440 1.21451 0.92154 0.92324 0.99065 1.20860 1.03455 1.02228 0.90069 1.18080 0.96430 0.93788 0.84754 1.43267 1.37922 1.22095 1.06074 1.22870 1.02104 0.92576 1.00498 1.22422 1.03703 1.00770 0.89801 1.70353 1.11785 1.05113 1.32851 1.25381 1.03409 1.02061 0.78072 1.20739 1.00521 0.95686 0.99755 1.21161 0.95456 0.98386 0.89631 0.94273 0.91497 0.93707 0.93705 0.91507 0.94269 0.96317 0.96305 0.92986 0.91401 0.91399 0.82939 0.84255 0.80202 0.80664 0.77264 0.84133 0.83246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.27 8.08 37.16 0.30 -1.97 16 2 C -0.06 -1.12 0.61 -154.51 -0.09 -1.22 16 3 C -0.13 -2.26 8.08 37.16 0.30 -1.96 16 4 C 0.03 0.84 4.04 -27.88 -0.11 0.73 16 5 C -0.51 -13.42 7.65 -34.44 -0.26 -13.68 16 6 H 0.06 1.55 5.68 -52.49 -0.30 1.25 16 7 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 8 N -0.89 -26.09 13.29 55.43 0.74 -25.35 16 9 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 13 C 0.08 1.40 4.33 37.16 0.16 1.56 16 14 O -0.34 -5.26 8.12 -40.61 -0.33 -5.59 16 15 C 0.50 7.20 7.89 34.51 0.27 7.47 16 16 O -0.51 -8.58 16.13 -19.26 -0.31 -8.89 16 17 C -0.13 -1.34 5.87 -104.97 -0.62 -1.96 16 18 C -0.03 -0.27 9.61 -39.20 -0.38 -0.65 16 19 C -0.15 -1.07 9.45 -39.47 -0.37 -1.45 16 20 C 0.16 1.25 6.64 -83.60 -0.55 0.69 16 21 N -0.41 -3.22 2.98 -62.05 -0.19 -3.41 16 22 C -0.05 -0.36 10.85 -16.45 -0.18 -0.54 16 23 C -0.02 -0.17 11.85 -17.81 -0.21 -0.39 16 24 N -0.48 -4.80 11.24 -14.46 -0.16 -4.96 16 25 C 0.19 1.51 11.91 -89.58 -1.07 0.44 16 26 C -0.15 -1.03 9.45 -39.47 -0.37 -1.41 16 27 C -0.03 -0.24 9.59 -39.20 -0.38 -0.62 16 28 H 0.04 0.61 7.68 -51.93 -0.40 0.21 16 29 H 0.07 1.28 6.62 -51.93 -0.34 0.93 16 30 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 33 H 0.04 0.60 7.68 -51.93 -0.40 0.21 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 37 H 0.07 1.22 8.14 -51.92 -0.42 0.79 16 38 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.15 1.25 7.60 -52.49 -0.40 0.86 16 40 H 0.14 0.72 6.79 -52.49 -0.36 0.36 16 41 H 0.18 0.75 7.13 -52.49 -0.37 0.37 16 42 H 0.18 0.97 8.06 -52.49 -0.42 0.54 16 43 H 0.21 0.92 7.05 -52.48 -0.37 0.55 16 44 H 0.14 0.61 6.75 -52.48 -0.35 0.25 16 45 H 0.15 1.24 7.64 -52.49 -0.40 0.84 16 LS Contribution 376.40 15.07 5.67 5.67 Total: -1.00 -32.45 376.40 -9.39 -41.84 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: -6.13 Total: -1.75 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: -3.66 Total: -13.52 kcal Atomic # 7 Polarization: -34.11 SS G_CDS: 0.39 Total: -33.72 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: -0.64 Total: -14.48 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.45 -9.39 -41.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195055598.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.509 kcal (2) G-P(sol) polarization free energy of solvation -32.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.53 seconds