Wall clock time and date at job start Tue Mar 31 2020 15:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47214 * 2 1 4 4 C 1.53007 * 109.47243 * 239.99945 * 2 1 3 5 5 C 1.50704 * 109.47014 * 59.99909 * 4 2 1 6 6 H 1.08001 * 119.99616 * 0.02562 * 5 4 2 7 7 C 1.37879 * 119.99988 * 179.97438 * 5 4 2 8 8 N 1.31512 * 119.99828 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 119.99785 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47136 * 90.00636 * 9 7 5 11 11 H 1.48502 * 109.47091 * 210.00266 * 9 7 5 12 12 H 1.48500 * 109.47198 * 329.99875 * 9 7 5 13 13 C 1.52998 * 109.46989 * 120.00020 * 2 1 3 14 14 O 1.45196 * 109.47070 * 299.99884 * 13 2 1 15 15 C 1.34745 * 116.99808 * 180.02562 * 14 13 2 16 16 O 1.21494 * 120.00074 * 359.72911 * 15 14 13 17 17 C 1.47521 * 119.99811 * 179.97438 * 15 14 13 18 18 C 1.39769 * 120.08572 * 359.73208 * 17 15 14 19 19 C 1.37704 * 119.91421 * 179.71907 * 18 17 15 20 20 C 1.39058 * 120.08513 * 0.52785 * 19 18 17 21 21 N 1.39840 * 119.91549 * 179.74216 * 20 19 18 22 22 C 1.37162 * 126.48532 * 359.73568 * 21 20 19 23 23 C 1.34625 * 106.83130 * 179.89855 * 22 21 20 24 24 N 1.34161 * 108.21334 * 0.36302 * 23 22 21 25 25 C 1.30482 * 109.36874 * 359.76901 * 24 23 22 26 26 C 1.39055 * 120.16884 * 359.76438 * 20 19 18 27 27 C 1.37706 * 120.08890 * 359.95774 * 26 20 19 28 28 H 1.08994 * 109.47260 * 299.99888 * 1 2 3 29 29 H 1.09005 * 109.47000 * 60.00333 * 1 2 3 30 30 H 1.09004 * 109.47306 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47428 * 180.02562 * 3 2 1 32 32 H 1.09006 * 109.47130 * 300.00224 * 3 2 1 33 33 H 1.09003 * 109.47043 * 59.99678 * 3 2 1 34 34 H 1.08999 * 109.47130 * 180.02562 * 4 2 1 35 35 H 1.08996 * 109.47345 * 300.00059 * 4 2 1 36 36 H 0.97005 * 120.00048 * 180.02562 * 8 7 5 37 37 H 1.09012 * 109.46921 * 179.97438 * 13 2 1 38 38 H 1.08996 * 109.47090 * 60.00252 * 13 2 1 39 39 H 1.07994 * 120.04313 * 359.96478 * 18 17 15 40 40 H 1.08002 * 119.95913 * 180.27408 * 19 18 17 41 41 H 1.08000 * 126.58477 * 0.02562 * 22 21 20 42 42 H 1.07997 * 125.89836 * 180.13424 * 23 22 21 43 43 H 1.08007 * 125.72512 * 180.02562 * 25 24 23 44 44 H 1.08009 * 119.96039 * 179.97438 * 26 20 19 45 45 H 1.07998 * 120.04588 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5377 -0.0109 -2.4798 6 1 0.9171 0.8675 -2.3806 7 6 1.8712 -0.4816 -3.7320 8 7 2.6273 -1.5509 -3.8527 9 14 1.2491 0.3994 -5.2572 10 1 2.2274 1.4410 -5.6608 11 1 1.0844 -0.5795 -6.3617 12 1 -0.0592 1.0368 -4.9616 13 6 2.0399 -0.7212 1.2492 14 8 1.5559 -0.0368 2.4347 15 6 1.9184 -0.5485 3.6274 16 8 2.6156 -1.5423 3.6754 17 6 1.4643 0.0949 4.8748 18 6 0.6626 1.2385 4.8216 19 6 0.2358 1.8329 5.9882 20 6 0.6105 1.3030 7.2181 21 7 0.1796 1.9126 8.4005 22 6 -0.6060 3.0324 8.5015 23 6 -0.7792 3.2700 9.8152 24 7 -0.1136 2.3296 10.5027 25 6 0.4647 1.5109 9.6674 26 6 1.4131 0.1689 7.2751 27 6 1.8391 -0.4345 6.1129 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 3.1300 -0.7217 -1.2490 35 1 1.6767 -1.7489 -1.2493 36 1 2.8623 -1.8819 -4.7337 37 1 3.1301 -0.7216 1.2490 38 1 1.6766 -1.7489 1.2492 39 1 0.3749 1.6533 3.8669 40 1 -0.3874 2.7141 5.9479 41 1 -1.0099 3.6112 7.6840 42 1 -1.3518 4.0800 10.2422 43 1 1.0685 0.6569 9.9372 44 1 1.7025 -0.2396 8.2321 45 1 2.4628 -1.3151 6.1579 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195055598.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:49 Heat of formation + Delta-G solvation = -22.135825 kcal Electronic energy + Delta-G solvation = -26509.772850 eV Core-core repulsion = 22685.552675 eV Total energy + Delta-G solvation = -3824.220174 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 5.59 seconds Orbital eigenvalues (eV) -43.35434 -41.67816 -39.99534 -38.65274 -36.90221 -35.26535 -34.40213 -32.52587 -31.13513 -30.38616 -29.25439 -27.95102 -27.94550 -25.80149 -24.84243 -24.31618 -22.80770 -21.67189 -21.48728 -19.99644 -19.68624 -18.96084 -18.36281 -17.74010 -17.48077 -16.54519 -16.53156 -16.28625 -16.02169 -15.50990 -15.33097 -15.15730 -14.83046 -14.73028 -14.66438 -14.40770 -14.19907 -14.08525 -13.86259 -13.75970 -13.49929 -12.97038 -12.74374 -12.65969 -12.31215 -12.30261 -12.21969 -11.97709 -11.85670 -11.79607 -11.75036 -11.36779 -11.16331 -11.03556 -10.89663 -10.52394 -10.26259 -9.81372 -9.41936 -8.15489 -6.23131 -0.74656 0.15979 0.89752 1.42973 1.43512 1.52315 1.54680 1.59008 1.61453 2.09129 2.44257 2.62755 3.19206 3.44117 3.52925 3.60263 3.73244 3.86333 3.92226 3.94034 4.02793 4.09511 4.22746 4.43122 4.49579 4.53859 4.57423 4.59984 4.73967 4.81689 4.84184 4.93261 5.02973 5.09190 5.14521 5.16821 5.32432 5.39813 5.43223 5.44951 5.47275 5.51888 5.54078 5.70601 5.75467 5.87791 6.16872 6.28093 6.63103 6.90877 6.94560 7.44467 8.97008 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.029705 B = 0.002002 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.369803 B =13979.897718 C =14725.909028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.054 4.054 3 C -0.120 4.120 4 C 0.039 3.961 5 C -0.514 4.514 6 H 0.073 0.927 7 C -0.005 4.005 8 N -0.937 5.937 9 Si 0.960 3.040 10 H -0.276 1.276 11 H -0.289 1.289 12 H -0.260 1.260 13 C 0.090 3.910 14 O -0.338 6.338 15 C 0.502 3.498 16 O -0.542 6.542 17 C -0.147 4.147 18 C -0.029 4.029 19 C -0.141 4.141 20 C 0.166 3.834 21 N -0.419 5.419 22 C -0.050 4.050 23 C -0.042 4.042 24 N -0.521 5.521 25 C 0.186 3.814 26 C -0.140 4.140 27 C -0.030 4.030 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.056 0.944 33 H 0.070 0.930 34 H -0.011 1.011 35 H -0.011 1.011 36 H 0.260 0.740 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.159 0.841 40 H 0.165 0.835 41 H 0.209 0.791 42 H 0.191 0.809 43 H 0.238 0.762 44 H 0.169 0.831 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.714 9.544 25.591 28.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.054 4.054 3 C -0.177 4.177 4 C 0.002 3.998 5 C -0.552 4.552 6 H 0.091 0.909 7 C -0.202 4.202 8 N -0.578 5.578 9 Si 0.785 3.215 10 H -0.201 1.201 11 H -0.215 1.215 12 H -0.184 1.184 13 C 0.016 3.984 14 O -0.254 6.254 15 C 0.348 3.652 16 O -0.433 6.433 17 C -0.149 4.149 18 C -0.048 4.048 19 C -0.161 4.161 20 C 0.072 3.928 21 N -0.098 5.098 22 C -0.179 4.179 23 C -0.186 4.186 24 N -0.239 5.239 25 C -0.094 4.094 26 C -0.159 4.159 27 C -0.049 4.049 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.008 0.992 35 H 0.008 0.992 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.177 0.823 40 H 0.183 0.817 41 H 0.226 0.774 42 H 0.208 0.792 43 H 0.254 0.746 44 H 0.186 0.814 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -6.417 9.108 26.261 28.526 hybrid contribution 0.286 -0.381 -2.149 2.201 sum -6.131 8.726 24.112 26.365 Atomic orbital electron populations 1.21656 0.93390 1.00905 1.01766 1.20625 0.97194 0.96586 0.91023 1.21659 0.99688 0.94596 1.01791 1.18995 0.94505 0.94355 0.91962 1.21541 1.30592 1.12140 0.90886 0.90905 1.25951 0.95662 0.95876 1.02728 1.70114 1.38670 1.24871 1.24167 0.85511 0.79193 0.78100 0.78648 1.20125 1.21532 1.18350 1.23162 0.98361 0.95452 0.81405 1.86495 1.69211 1.55290 1.14387 1.21642 0.76804 0.81665 0.85058 1.90828 1.37356 1.26662 1.88492 1.19238 1.05744 0.99916 0.89986 1.21509 0.91632 0.91581 1.00040 1.21086 1.03078 1.02654 0.89243 1.18241 0.95947 0.93691 0.84933 1.43365 1.38101 1.22366 1.05994 1.23359 1.01292 0.92237 1.01014 1.22827 1.04142 1.01187 0.90465 1.70337 1.13047 1.06322 1.34169 1.25968 1.03132 1.02397 0.77950 1.20972 0.99572 0.95173 1.00216 1.21217 0.95531 0.98531 0.89578 0.91141 0.92563 0.94403 0.94399 0.92527 0.91134 0.99233 0.99223 0.93115 0.92395 0.92408 0.82290 0.81713 0.77422 0.79161 0.74645 0.81378 0.83343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.18 8.08 71.98 0.58 -3.60 16 2 C -0.05 -2.09 0.61 -52.18 -0.03 -2.12 16 3 C -0.12 -4.18 8.08 71.98 0.58 -3.60 16 4 C 0.04 1.96 4.04 29.85 0.12 2.09 16 5 C -0.51 -27.32 7.65 25.60 0.20 -27.13 16 6 H 0.07 3.64 5.68 -2.91 -0.02 3.62 16 7 C -0.01 -0.29 5.46 84.66 0.46 0.17 16 8 N -0.94 -56.28 13.29 21.45 0.28 -56.00 16 9 Si 0.96 43.15 29.54 68.60 2.03 45.17 16 10 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 11 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 12 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 13 C 0.09 3.21 4.33 71.98 0.31 3.52 16 14 O -0.34 -10.01 8.12 -56.55 -0.46 -10.47 16 15 C 0.50 14.21 7.89 70.27 0.55 14.76 16 16 O -0.54 -18.69 16.13 19.86 0.32 -18.37 16 17 C -0.15 -2.94 5.87 -20.09 -0.12 -3.06 16 18 C -0.03 -0.43 9.61 22.51 0.22 -0.22 16 19 C -0.14 -1.57 9.45 22.34 0.21 -1.36 16 20 C 0.17 2.00 6.64 38.26 0.25 2.25 16 21 N -0.42 -5.23 2.98 -350.24 -1.04 -6.28 16 22 C -0.05 -0.56 10.85 83.03 0.90 0.34 16 23 C -0.04 -0.59 11.85 83.51 0.99 0.39 16 24 N -0.52 -9.47 11.24 -199.66 -2.24 -11.71 16 25 C 0.19 2.48 11.91 179.98 2.14 4.62 16 26 C -0.14 -1.57 9.45 22.34 0.21 -1.36 16 27 C -0.03 -0.48 9.59 22.52 0.22 -0.26 16 28 H 0.07 2.00 7.68 -2.39 -0.02 1.99 16 29 H 0.06 2.07 6.62 -2.38 -0.02 2.05 16 30 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.06 2.07 6.62 -2.38 -0.02 2.06 16 33 H 0.07 2.00 7.68 -2.39 -0.02 1.98 16 34 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 35 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 36 H 0.26 14.83 8.31 -92.70 -0.77 14.06 16 37 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 38 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.16 2.13 7.60 -2.91 -0.02 2.11 16 40 H 0.17 0.95 6.79 -2.91 -0.02 0.93 16 41 H 0.21 0.89 7.13 -2.91 -0.02 0.87 16 42 H 0.19 1.78 8.06 -2.91 -0.02 1.75 16 43 H 0.24 1.38 7.05 -2.91 -0.02 1.36 16 44 H 0.17 0.87 6.75 -2.91 -0.02 0.85 16 45 H 0.15 2.36 7.64 -2.91 -0.02 2.34 16 Total: -1.00 -72.13 376.40 7.68 -64.45 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: 1.00 Total: 7.76 kcal Atomic # 6 Polarization: -22.35 SS G_CDS: 7.80 Total: -14.55 kcal Atomic # 7 Polarization: -70.98 SS G_CDS: -3.00 Total: -73.99 kcal Atomic # 8 Polarization: -28.70 SS G_CDS: -0.14 Total: -28.84 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Total: -72.13 7.68 -64.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195055598.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.312 kcal (2) G-P(sol) polarization free energy of solvation -72.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.60 seconds