Wall clock time and date at job start Tue Mar 31 2020 15:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47342 * 2 1 4 4 C 1.52999 * 109.47070 * 239.99515 * 2 1 3 5 5 C 1.50707 * 109.47133 * 60.00298 * 4 2 1 6 6 H 1.08001 * 119.99615 * 359.97438 * 5 4 2 7 7 C 1.37868 * 120.00019 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00412 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99870 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47127 * 90.00203 * 9 7 5 11 11 H 1.48502 * 109.47106 * 209.99800 * 9 7 5 12 12 H 1.48496 * 109.47329 * 330.00168 * 9 7 5 13 13 C 1.52998 * 109.47014 * 119.99826 * 2 1 3 14 14 O 1.45199 * 109.47286 * 299.99709 * 13 2 1 15 15 C 1.34758 * 117.00128 * 180.02562 * 14 13 2 16 16 O 1.21525 * 119.99992 * 0.02562 * 15 14 13 17 17 C 1.47269 * 119.99997 * 180.02562 * 15 14 13 18 18 C 1.41387 * 126.41953 * 359.97177 * 17 15 14 19 19 N 1.30457 * 108.05664 * 179.77655 * 18 17 15 20 20 N 1.39936 * 108.93593 * 0.38538 * 19 18 17 21 21 C 1.40150 * 125.75996 * 179.86978 * 20 19 18 22 22 C 1.38847 * 120.06629 * 179.71404 * 21 20 19 23 23 C 1.38120 * 119.93263 * 179.97438 * 22 21 20 24 24 C 1.38285 * 120.06514 * 359.97438 * 23 22 21 25 25 C 1.38272 * 120.13574 * 359.97438 * 24 23 22 26 26 C 1.38113 * 120.07216 * 0.02587 * 25 24 23 27 27 C 1.34503 * 108.47860 * 359.60952 * 20 19 18 28 28 H 1.08998 * 109.46916 * 300.00567 * 1 2 3 29 29 H 1.08998 * 109.47182 * 60.00215 * 1 2 3 30 30 H 1.08995 * 109.47442 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46980 * 180.02562 * 3 2 1 32 32 H 1.09008 * 109.46535 * 299.99520 * 3 2 1 33 33 H 1.08998 * 109.47120 * 59.99564 * 3 2 1 34 34 H 1.08997 * 109.47514 * 180.02562 * 4 2 1 35 35 H 1.08995 * 109.47244 * 300.00434 * 4 2 1 36 36 H 0.96999 * 120.00253 * 179.97438 * 8 7 5 37 37 H 1.09008 * 109.47272 * 179.97438 * 13 2 1 38 38 H 1.08998 * 109.47513 * 59.99730 * 13 2 1 39 39 H 1.07998 * 125.97667 * 0.02770 * 18 17 15 40 40 H 1.08003 * 120.03499 * 359.97438 * 22 21 20 41 41 H 1.07997 * 119.96399 * 180.25180 * 23 22 21 42 42 H 1.07996 * 119.92683 * 179.97438 * 24 23 22 43 43 H 1.08008 * 119.96682 * 179.97438 * 25 24 23 44 44 H 1.08005 * 120.03790 * 179.97438 * 26 25 24 45 45 H 1.07994 * 126.31251 * 180.25101 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.5377 -0.0110 -2.4797 6 1 0.9165 0.8669 -2.3807 7 6 1.8712 -0.4818 -3.7319 8 7 2.6272 -1.5511 -3.8526 9 14 1.2479 0.3983 -5.2572 10 1 2.2254 1.4407 -5.6613 11 1 1.0838 -0.5809 -6.3614 12 1 -0.0606 1.0350 -4.9614 13 6 2.0399 -0.7212 1.2493 14 8 1.5560 -0.0367 2.4348 15 6 1.9185 -0.5484 3.6276 16 8 2.6203 -1.5394 3.6756 17 6 1.4642 0.0933 4.8728 18 6 0.6497 1.2444 4.9752 19 7 0.4646 1.4974 6.2416 20 7 1.1481 0.5408 7.0005 21 6 1.1890 0.4823 8.4001 22 6 1.9025 -0.5264 9.0337 23 6 1.9414 -0.5812 10.4132 24 6 1.2711 0.3676 11.1634 25 6 0.5606 1.3740 10.5353 26 6 0.5179 1.4341 9.1562 27 6 1.7545 -0.3164 6.1598 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6767 1.9564 0.8899 34 1 3.1299 -0.7218 -1.2490 35 1 1.6766 -1.7489 -1.2491 36 1 2.8615 -1.8826 -4.7336 37 1 3.1300 -0.7216 1.2491 38 1 1.6766 -1.7488 1.2494 39 1 0.2475 1.8125 4.1495 40 1 2.4266 -1.2675 8.4483 41 1 2.4996 -1.3631 10.9065 42 1 1.3027 0.3225 12.2419 43 1 0.0377 2.1134 11.1239 44 1 -0.0376 2.2201 8.6662 45 1 2.3568 -1.1681 6.4395 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195058934.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:01 Heat of formation + Delta-G solvation = 6.372863 kcal Electronic energy + Delta-G solvation = -26401.249155 eV Core-core repulsion = 22578.265211 eV Total energy + Delta-G solvation = -3822.983945 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 4.05 seconds Orbital eigenvalues (eV) -42.06471 -39.95540 -39.32478 -37.07406 -35.28895 -34.08862 -32.31551 -31.80069 -30.70751 -29.71316 -27.30304 -26.46873 -26.37367 -24.57741 -23.70833 -23.04116 -22.17508 -21.13394 -20.17029 -18.96093 -18.17408 -17.15789 -16.53838 -16.23944 -16.21825 -15.91908 -15.73556 -15.54463 -14.88439 -14.53259 -14.38134 -14.07995 -13.67151 -13.51901 -13.25741 -13.21036 -13.01671 -12.36361 -12.31014 -12.21121 -12.03768 -11.81731 -11.33672 -11.23620 -10.94899 -10.82999 -10.81530 -10.57208 -10.42594 -10.26277 -10.24035 -10.16617 -9.70885 -9.59401 -9.57020 -9.19612 -8.92349 -8.59785 -8.35009 -5.99224 -4.00213 0.23404 0.76238 1.42530 1.77036 1.88810 2.98425 3.15366 3.24806 3.32786 3.39546 3.42177 4.00312 4.19892 4.37372 4.42677 4.47006 4.57938 4.76661 4.79539 4.90299 5.02858 5.13083 5.36521 5.40176 5.43479 5.54766 5.55802 5.69713 5.77433 5.85915 5.91891 6.05670 6.13523 6.14799 6.23232 6.41311 6.54947 6.59935 6.67287 6.74300 6.85281 7.10934 7.14424 7.15037 7.16910 7.63196 7.75152 7.99008 8.03589 8.41634 9.04195 9.62793 11.12388 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.040661 B = 0.001911 C = 0.001849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.454898 B =14651.411363 C =15143.500979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.059 4.059 3 C -0.126 4.126 4 C 0.034 3.966 5 C -0.509 4.509 6 H 0.061 0.939 7 C 0.055 3.945 8 N -0.895 5.895 9 Si 0.891 3.109 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.081 3.919 14 O -0.344 6.344 15 C 0.538 3.462 16 O -0.521 6.521 17 C -0.260 4.260 18 C 0.115 3.885 19 N -0.294 5.294 20 N -0.312 5.312 21 C 0.153 3.847 22 C -0.138 4.138 23 C -0.093 4.093 24 C -0.126 4.126 25 C -0.097 4.097 26 C -0.113 4.113 27 C 0.131 3.869 28 H 0.040 0.960 29 H 0.065 0.935 30 H 0.043 0.957 31 H 0.043 0.957 32 H 0.065 0.935 33 H 0.040 0.960 34 H 0.018 0.982 35 H 0.018 0.982 36 H 0.260 0.740 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.207 0.793 40 H 0.133 0.867 41 H 0.135 0.865 42 H 0.130 0.870 43 H 0.133 0.867 44 H 0.141 0.859 45 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.146 4.456 30.017 30.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.059 4.059 3 C -0.183 4.183 4 C -0.003 4.003 5 C -0.547 4.547 6 H 0.079 0.921 7 C -0.146 4.146 8 N -0.535 5.535 9 Si 0.719 3.281 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 C 0.008 3.992 14 O -0.260 6.260 15 C 0.383 3.617 16 O -0.412 6.412 17 C -0.272 4.272 18 C -0.073 4.073 19 N -0.111 5.111 20 N -0.084 5.084 21 C 0.061 3.939 22 C -0.159 4.159 23 C -0.111 4.111 24 C -0.145 4.145 25 C -0.116 4.116 26 C -0.133 4.133 27 C -0.016 4.016 28 H 0.059 0.941 29 H 0.084 0.916 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.059 0.941 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.223 0.777 40 H 0.151 0.849 41 H 0.153 0.847 42 H 0.148 0.852 43 H 0.151 0.849 44 H 0.158 0.842 45 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -3.422 4.830 30.754 31.319 hybrid contribution 0.283 -0.378 -1.680 1.745 sum -3.139 4.452 29.075 29.581 Atomic orbital electron populations 1.21715 0.94811 1.00952 1.00836 1.20817 0.96164 0.96223 0.92670 1.21718 1.00043 0.95725 1.00833 1.19128 0.96390 0.95307 0.89430 1.21158 1.31143 1.12109 0.90297 0.92056 1.25016 0.95339 0.95093 0.99121 1.69965 1.37043 1.23027 1.23457 0.86615 0.79231 0.79370 0.82908 1.20758 1.21359 1.19875 1.23518 0.98975 0.95935 0.80741 1.86517 1.69437 1.55644 1.14398 1.19825 0.76997 0.81265 0.83635 1.90833 1.36430 1.25645 1.88286 1.19484 1.13191 1.03351 0.91204 1.24465 0.94075 0.94381 0.94413 1.77307 1.18347 1.11755 1.03740 1.45665 1.37132 1.21210 1.04385 1.17605 1.00399 0.97895 0.77957 1.20932 1.00999 0.98295 0.95636 1.21016 0.98701 0.98962 0.92465 1.21300 0.97680 0.94979 1.00524 1.21118 0.98459 0.98454 0.93520 1.20967 0.99804 0.98706 0.93829 1.22976 0.95095 0.94867 0.88712 0.94141 0.91598 0.93774 0.93769 0.91610 0.94128 0.96333 0.96327 0.93043 0.91549 0.91555 0.77652 0.84879 0.84734 0.85240 0.84863 0.84157 0.78910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.37 8.08 37.16 0.30 -2.07 16 2 C -0.06 -1.18 0.61 -154.51 -0.09 -1.27 16 3 C -0.13 -2.37 8.08 37.16 0.30 -2.07 16 4 C 0.03 0.86 4.04 -27.88 -0.11 0.75 16 5 C -0.51 -13.68 7.65 -34.44 -0.26 -13.94 16 6 H 0.06 1.59 5.68 -52.49 -0.30 1.29 16 7 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.51 13.29 55.43 0.74 -25.78 16 9 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 12 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 13 C 0.08 1.51 4.33 37.16 0.16 1.67 16 14 O -0.34 -5.69 8.73 -40.65 -0.35 -6.04 16 15 C 0.54 8.50 7.95 34.40 0.27 8.77 16 16 O -0.52 -9.44 16.69 -19.29 -0.32 -9.76 16 17 C -0.26 -3.34 6.13 -105.06 -0.64 -3.99 16 18 C 0.12 1.33 11.87 -16.94 -0.20 1.13 16 19 N -0.29 -3.50 11.77 30.88 0.36 -3.14 16 20 N -0.31 -3.39 3.77 -10.20 -0.04 -3.43 16 21 C 0.15 1.39 6.68 -83.60 -0.56 0.83 16 22 C -0.14 -0.96 9.45 -39.40 -0.37 -1.33 16 23 C -0.09 -0.50 10.04 -39.61 -0.40 -0.89 16 24 C -0.13 -0.64 10.04 -39.55 -0.40 -1.03 16 25 C -0.10 -0.56 10.04 -39.61 -0.40 -0.96 16 26 C -0.11 -0.91 9.65 -39.40 -0.38 -1.30 16 27 C 0.13 1.42 10.61 -16.41 -0.17 1.24 16 28 H 0.04 0.66 7.68 -51.93 -0.40 0.27 16 29 H 0.07 1.31 6.62 -51.93 -0.34 0.96 16 30 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.06 1.30 6.62 -51.92 -0.34 0.95 16 33 H 0.04 0.67 7.68 -51.93 -0.40 0.27 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.07 1.25 8.14 -51.92 -0.42 0.83 16 38 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.21 1.91 8.06 -52.49 -0.42 1.49 16 40 H 0.13 0.72 6.71 -52.48 -0.35 0.36 16 41 H 0.13 0.41 8.06 -52.49 -0.42 -0.02 16 42 H 0.13 0.35 8.06 -52.49 -0.42 -0.07 16 43 H 0.13 0.48 8.06 -52.48 -0.42 0.05 16 44 H 0.14 1.16 7.68 -52.48 -0.40 0.76 16 45 H 0.19 1.58 7.01 -52.49 -0.37 1.21 16 LS Contribution 380.86 15.07 5.74 5.74 Total: -1.00 -32.56 380.86 -8.22 -40.78 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -6.27 Total: -1.68 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: -3.06 Total: -13.01 kcal Atomic # 7 Polarization: -33.41 SS G_CDS: 1.06 Total: -32.35 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -0.68 Total: -15.80 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.56 -8.22 -40.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195058934.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.151 kcal (2) G-P(sol) polarization free energy of solvation -32.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.05 seconds