Wall clock time and date at job start Tue Mar 31 2020 15:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47021 * 2 1 4 4 C 1.53004 * 109.46589 * 240.00534 * 2 1 3 5 5 C 1.50698 * 109.47329 * 59.99871 * 4 2 1 6 6 H 1.07991 * 120.00370 * 359.97438 * 5 4 2 7 7 C 1.37881 * 119.99851 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99865 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00034 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.46997 * 89.99821 * 9 7 5 11 11 H 1.48505 * 109.46963 * 209.99733 * 9 7 5 12 12 H 1.48494 * 109.47132 * 329.99639 * 9 7 5 13 13 C 1.52998 * 109.47107 * 120.00412 * 2 1 3 14 14 O 1.45202 * 109.46958 * 299.99662 * 13 2 1 15 15 C 1.34709 * 116.99869 * 180.02562 * 14 13 2 16 16 O 1.21467 * 119.99836 * 0.02562 * 15 14 13 17 17 C 1.47736 * 120.00113 * 179.97438 * 15 14 13 18 18 C 1.39679 * 120.11597 * 0.21190 * 17 15 14 19 19 C 1.37965 * 119.97717 * 180.24915 * 18 17 15 20 20 C 1.38268 * 120.22790 * 359.79485 * 19 18 17 21 21 C 1.38928 * 120.23659 * 359.97438 * 20 19 18 22 22 N 1.40205 * 119.99302 * 180.02562 * 21 20 19 23 23 C 1.35222 * 126.05523 * 359.97438 * 22 21 20 24 24 C 1.35322 * 107.71450 * 179.97438 * 23 22 21 25 25 C 1.39915 * 107.92817 * 359.97438 * 24 23 22 26 26 N 1.30871 * 108.24661 * 359.74117 * 25 24 23 27 27 C 1.38590 * 120.01283 * 359.97438 * 21 20 19 28 28 H 1.08999 * 109.46663 * 299.99959 * 1 2 3 29 29 H 1.09001 * 109.47158 * 59.99235 * 1 2 3 30 30 H 1.08994 * 109.47172 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47097 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47779 * 300.00385 * 3 2 1 33 33 H 1.08999 * 109.47368 * 60.00473 * 3 2 1 34 34 H 1.09002 * 109.46498 * 179.97438 * 4 2 1 35 35 H 1.09000 * 109.47111 * 299.99205 * 4 2 1 36 36 H 0.96998 * 120.00360 * 180.02562 * 8 7 5 37 37 H 1.09002 * 109.46661 * 179.97438 * 13 2 1 38 38 H 1.08994 * 109.47009 * 60.00035 * 13 2 1 39 39 H 1.07996 * 120.00869 * 0.02562 * 18 17 15 40 40 H 1.08006 * 119.88469 * 179.76761 * 19 18 17 41 41 H 1.08002 * 119.88445 * 179.97438 * 20 19 18 42 42 H 1.08000 * 126.14191 * 359.97438 * 23 22 21 43 43 H 1.08001 * 126.03030 * 180.02562 * 24 23 22 44 44 H 1.08002 * 125.87357 * 180.02562 * 25 24 23 45 45 H 1.08002 * 120.10710 * 179.97438 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 1.5375 -0.0107 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8710 -0.4814 -3.7321 8 7 2.6279 -1.5501 -3.8528 9 14 1.2489 0.3996 -5.2572 10 1 2.2272 1.4414 -5.6607 11 1 1.0842 -0.5792 -6.3618 12 1 -0.0593 1.0371 -4.9616 13 6 2.0400 -0.7213 1.2492 14 8 1.5561 -0.0369 2.4348 15 6 1.9185 -0.5485 3.6270 16 8 2.6199 -1.5390 3.6749 17 6 1.4637 0.0957 4.8764 18 6 0.6543 1.2329 4.8241 19 6 0.2355 1.8352 5.9925 20 6 0.6107 1.3147 7.2173 21 6 1.4116 0.1812 7.2800 22 7 1.7887 -0.3426 8.5247 23 6 1.4451 0.1545 9.7344 24 6 2.0072 -0.6352 10.6787 25 6 2.7174 -1.6486 10.0258 26 7 2.5822 -1.4776 8.7353 27 6 1.8371 -0.4324 6.1125 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6768 1.9563 0.8900 34 1 3.1299 -0.7208 -1.2496 35 1 1.6767 -1.7489 -1.2494 36 1 2.8628 -1.8811 -4.7338 37 1 3.1301 -0.7217 1.2489 38 1 1.6767 -1.7489 1.2491 39 1 0.3594 1.6425 3.8694 40 1 -0.3873 2.7166 5.9504 41 1 0.2800 1.7909 8.1285 42 1 0.8321 1.0252 9.9146 43 1 1.9219 -0.5063 11.7476 44 1 3.2767 -2.4388 10.5044 45 1 2.4601 -1.3133 6.1594 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195085767.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:19 Heat of formation + Delta-G solvation = 10.553163 kcal Electronic energy + Delta-G solvation = -26603.433606 eV Core-core repulsion = 22780.630933 eV Total energy + Delta-G solvation = -3822.802674 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -41.90987 -40.48674 -39.03514 -37.15536 -35.42010 -33.98653 -32.35329 -31.84438 -30.61659 -29.43156 -27.36683 -26.54982 -26.42999 -24.67722 -23.88222 -22.91786 -21.89405 -21.02384 -20.35548 -18.89357 -18.20129 -17.19138 -16.66977 -16.33912 -16.17631 -15.99845 -15.62593 -15.38513 -14.88735 -14.54896 -14.21210 -13.89101 -13.84658 -13.61725 -13.19196 -13.10972 -13.07324 -12.46967 -12.35095 -12.26158 -12.06732 -11.86518 -11.29164 -11.07745 -10.98421 -10.84720 -10.74984 -10.61907 -10.58583 -10.33702 -10.32035 -10.21536 -9.76197 -9.57087 -9.52446 -9.23977 -8.96152 -8.49284 -8.37649 -6.01701 -4.02994 0.21463 0.58859 1.69093 1.92654 2.39040 2.50779 2.76134 3.30741 3.37586 3.39837 3.44178 4.06967 4.22961 4.39742 4.45071 4.45721 4.66037 4.78703 4.84998 5.03125 5.19914 5.23560 5.33809 5.42361 5.47169 5.49568 5.52008 5.70581 5.79961 5.84967 5.92345 6.03117 6.15634 6.17149 6.22296 6.35135 6.48432 6.58453 6.68907 6.72057 6.75981 7.09177 7.09474 7.11671 7.21939 7.59756 7.71385 7.85971 7.96731 8.38241 9.01302 9.60053 11.09891 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.033720 B = 0.002047 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.163358 B =13677.427984 C =14311.206208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.058 4.058 3 C -0.126 4.126 4 C 0.034 3.966 5 C -0.510 4.510 6 H 0.061 0.939 7 C 0.055 3.945 8 N -0.895 5.895 9 Si 0.891 3.109 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.079 3.921 14 O -0.343 6.343 15 C 0.501 3.499 16 O -0.503 6.503 17 C -0.092 4.092 18 C -0.069 4.069 19 C -0.104 4.104 20 C -0.112 4.112 21 C 0.145 3.855 22 N -0.322 5.322 23 C 0.051 3.949 24 C -0.262 4.262 25 C 0.055 3.945 26 N -0.286 5.286 27 C -0.059 4.059 28 H 0.039 0.961 29 H 0.066 0.934 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.066 0.934 33 H 0.039 0.961 34 H 0.019 0.981 35 H 0.019 0.981 36 H 0.260 0.740 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.149 0.851 40 H 0.144 0.856 41 H 0.136 0.864 42 H 0.178 0.822 43 H 0.155 0.845 44 H 0.191 0.809 45 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.040 7.170 28.414 29.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.058 4.058 3 C -0.183 4.183 4 C -0.003 4.003 5 C -0.548 4.548 6 H 0.079 0.921 7 C -0.146 4.146 8 N -0.534 5.534 9 Si 0.719 3.281 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C 0.006 3.994 14 O -0.259 6.259 15 C 0.345 3.655 16 O -0.392 6.392 17 C -0.094 4.094 18 C -0.088 4.088 19 C -0.122 4.122 20 C -0.132 4.132 21 C 0.053 3.947 22 N -0.098 5.098 23 C -0.091 4.091 24 C -0.290 4.290 25 C -0.133 4.133 26 N -0.104 5.104 27 C -0.079 4.079 28 H 0.058 0.942 29 H 0.085 0.915 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.085 0.915 33 H 0.058 0.942 34 H 0.037 0.963 35 H 0.037 0.963 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.167 0.833 40 H 0.161 0.839 41 H 0.153 0.847 42 H 0.196 0.804 43 H 0.172 0.828 44 H 0.208 0.792 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -4.467 6.332 27.029 28.118 hybrid contribution -0.315 0.476 -0.031 0.572 sum -4.782 6.808 26.998 28.251 Atomic orbital electron populations 1.21722 0.94789 1.01002 1.00824 1.20824 0.96173 0.96225 0.92612 1.21721 1.00101 0.95695 1.00822 1.19132 0.96422 0.95323 0.89383 1.21141 1.31247 1.12135 0.90269 0.92060 1.25026 0.95325 0.95091 0.99151 1.69964 1.36901 1.23040 1.23510 0.86605 0.79207 0.79375 0.82879 1.20743 1.21333 1.19875 1.23580 0.99110 0.96036 0.80626 1.86515 1.69295 1.55634 1.14480 1.20947 0.77831 0.82066 0.84642 1.90851 1.35120 1.25036 1.88183 1.19064 1.01935 0.97789 0.90620 1.21673 0.93869 0.93157 1.00064 1.20997 1.00075 1.00384 0.90773 1.21039 0.97879 0.94626 0.99702 1.17292 0.99659 0.95321 0.82442 1.45870 1.38760 1.21419 1.03756 1.22640 1.01358 1.00789 0.84305 1.21625 1.07360 0.99478 1.00574 1.24135 0.98991 0.99470 0.90658 1.77571 1.12917 1.01471 1.18464 1.20944 0.98161 0.99947 0.88830 0.94229 0.91507 0.93721 0.93719 0.91520 0.94217 0.96309 0.96300 0.93001 0.91400 0.91403 0.83277 0.83865 0.84669 0.80443 0.82768 0.79249 0.82951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.34 8.08 37.16 0.30 -2.04 16 2 C -0.06 -1.16 0.61 -154.51 -0.09 -1.25 16 3 C -0.13 -2.34 8.08 37.16 0.30 -2.04 16 4 C 0.03 0.86 4.04 -27.88 -0.11 0.74 16 5 C -0.51 -13.62 7.65 -34.44 -0.26 -13.88 16 6 H 0.06 1.57 5.68 -52.49 -0.30 1.28 16 7 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 9 Si 0.89 21.24 29.54 -169.99 -5.02 16.21 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 13 C 0.08 1.47 4.33 37.16 0.16 1.63 16 14 O -0.34 -5.61 8.13 -40.52 -0.33 -5.94 16 15 C 0.50 8.04 7.90 34.61 0.27 8.31 16 16 O -0.50 -9.51 16.13 -19.24 -0.31 -9.82 16 17 C -0.09 -1.17 5.87 -105.00 -0.62 -1.79 16 18 C -0.07 -0.67 9.61 -39.14 -0.38 -1.05 16 19 C -0.10 -0.74 10.02 -39.67 -0.40 -1.13 16 20 C -0.11 -0.82 9.45 -39.32 -0.37 -1.19 16 21 C 0.14 1.52 6.68 -83.64 -0.56 0.96 16 22 N -0.32 -3.39 3.80 -10.73 -0.04 -3.43 16 23 C 0.05 0.38 10.80 -17.10 -0.18 0.19 16 24 C -0.26 -1.81 10.81 -39.99 -0.43 -2.24 16 25 C 0.05 0.46 12.02 -17.33 -0.21 0.26 16 26 N -0.29 -3.40 11.86 30.64 0.36 -3.04 16 27 C -0.06 -0.74 9.21 -38.98 -0.36 -1.10 16 28 H 0.04 0.63 7.68 -51.93 -0.40 0.24 16 29 H 0.07 1.30 6.62 -51.93 -0.34 0.96 16 30 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.07 1.30 6.62 -51.93 -0.34 0.95 16 33 H 0.04 0.64 7.68 -51.93 -0.40 0.24 16 34 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.15 1.34 7.61 -52.49 -0.40 0.94 16 40 H 0.14 0.58 8.06 -52.48 -0.42 0.16 16 41 H 0.14 0.56 6.72 -52.49 -0.35 0.21 16 42 H 0.18 0.61 7.03 -52.49 -0.37 0.24 16 43 H 0.15 0.63 8.06 -52.49 -0.42 0.20 16 44 H 0.19 0.98 8.06 -52.49 -0.42 0.55 16 45 H 0.15 2.19 7.28 -52.49 -0.38 1.81 16 LS Contribution 378.93 15.07 5.71 5.71 Total: -1.00 -33.27 378.93 -8.16 -41.43 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -6.23 Total: -1.22 kcal Atomic # 6 Polarization: -11.14 SS G_CDS: -3.04 Total: -14.18 kcal Atomic # 7 Polarization: -33.25 SS G_CDS: 1.06 Total: -32.19 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -0.64 Total: -15.76 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.27 -8.16 -41.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195085767.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.982 kcal (2) G-P(sol) polarization free energy of solvation -33.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.98 seconds