Wall clock time and date at job start Tue Mar 31 2020 15:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47021 * 2 1 4 4 C 1.53004 * 109.46589 * 240.00534 * 2 1 3 5 5 C 1.50698 * 109.47329 * 59.99871 * 4 2 1 6 6 H 1.07991 * 120.00370 * 359.97438 * 5 4 2 7 7 C 1.37881 * 119.99851 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99865 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00034 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.46997 * 89.99821 * 9 7 5 11 11 H 1.48505 * 109.46963 * 209.99733 * 9 7 5 12 12 H 1.48494 * 109.47132 * 329.99639 * 9 7 5 13 13 C 1.52998 * 109.47107 * 120.00412 * 2 1 3 14 14 O 1.45202 * 109.46958 * 299.99662 * 13 2 1 15 15 C 1.34709 * 116.99869 * 180.02562 * 14 13 2 16 16 O 1.21467 * 119.99836 * 0.02562 * 15 14 13 17 17 C 1.47736 * 120.00113 * 179.97438 * 15 14 13 18 18 C 1.39679 * 120.11597 * 0.21190 * 17 15 14 19 19 C 1.37965 * 119.97717 * 180.24915 * 18 17 15 20 20 C 1.38268 * 120.22790 * 359.79485 * 19 18 17 21 21 C 1.38928 * 120.23659 * 359.97438 * 20 19 18 22 22 N 1.40205 * 119.99302 * 180.02562 * 21 20 19 23 23 C 1.35222 * 126.05523 * 359.97438 * 22 21 20 24 24 C 1.35322 * 107.71450 * 179.97438 * 23 22 21 25 25 C 1.39915 * 107.92817 * 359.97438 * 24 23 22 26 26 N 1.30871 * 108.24661 * 359.74117 * 25 24 23 27 27 C 1.38590 * 120.01283 * 359.97438 * 21 20 19 28 28 H 1.08999 * 109.46663 * 299.99959 * 1 2 3 29 29 H 1.09001 * 109.47158 * 59.99235 * 1 2 3 30 30 H 1.08994 * 109.47172 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47097 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47779 * 300.00385 * 3 2 1 33 33 H 1.08999 * 109.47368 * 60.00473 * 3 2 1 34 34 H 1.09002 * 109.46498 * 179.97438 * 4 2 1 35 35 H 1.09000 * 109.47111 * 299.99205 * 4 2 1 36 36 H 0.96998 * 120.00360 * 180.02562 * 8 7 5 37 37 H 1.09002 * 109.46661 * 179.97438 * 13 2 1 38 38 H 1.08994 * 109.47009 * 60.00035 * 13 2 1 39 39 H 1.07996 * 120.00869 * 0.02562 * 18 17 15 40 40 H 1.08006 * 119.88469 * 179.76761 * 19 18 17 41 41 H 1.08002 * 119.88445 * 179.97438 * 20 19 18 42 42 H 1.08000 * 126.14191 * 359.97438 * 23 22 21 43 43 H 1.08001 * 126.03030 * 180.02562 * 24 23 22 44 44 H 1.08002 * 125.87357 * 180.02562 * 25 24 23 45 45 H 1.08002 * 120.10710 * 179.97438 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 1.5375 -0.0107 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8710 -0.4814 -3.7321 8 7 2.6279 -1.5501 -3.8528 9 14 1.2489 0.3996 -5.2572 10 1 2.2272 1.4414 -5.6607 11 1 1.0842 -0.5792 -6.3618 12 1 -0.0593 1.0371 -4.9616 13 6 2.0400 -0.7213 1.2492 14 8 1.5561 -0.0369 2.4348 15 6 1.9185 -0.5485 3.6270 16 8 2.6199 -1.5390 3.6749 17 6 1.4637 0.0957 4.8764 18 6 0.6543 1.2329 4.8241 19 6 0.2355 1.8352 5.9925 20 6 0.6107 1.3147 7.2173 21 6 1.4116 0.1812 7.2800 22 7 1.7887 -0.3426 8.5247 23 6 1.4451 0.1545 9.7344 24 6 2.0072 -0.6352 10.6787 25 6 2.7174 -1.6486 10.0258 26 7 2.5822 -1.4776 8.7353 27 6 1.8371 -0.4324 6.1125 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6768 1.9563 0.8900 34 1 3.1299 -0.7208 -1.2496 35 1 1.6767 -1.7489 -1.2494 36 1 2.8628 -1.8811 -4.7338 37 1 3.1301 -0.7217 1.2489 38 1 1.6767 -1.7489 1.2491 39 1 0.3594 1.6425 3.8694 40 1 -0.3873 2.7166 5.9504 41 1 0.2800 1.7909 8.1285 42 1 0.8321 1.0252 9.9146 43 1 1.9219 -0.5063 11.7476 44 1 3.2767 -2.4388 10.5044 45 1 2.4601 -1.3133 6.1594 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195085767.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:16 Heat of formation + Delta-G solvation = -7.199578 kcal Electronic energy + Delta-G solvation = -26604.203423 eV Core-core repulsion = 22780.630933 eV Total energy + Delta-G solvation = -3823.572490 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 2.53 seconds Orbital eigenvalues (eV) -42.54052 -41.70773 -39.92249 -38.67936 -36.95504 -34.71924 -34.38660 -32.60436 -31.27133 -30.13523 -29.29397 -28.04325 -27.95366 -25.83683 -24.81440 -24.43493 -22.77302 -21.71614 -21.22665 -20.02296 -19.57036 -18.46531 -18.21789 -17.55769 -17.44005 -17.07080 -16.53269 -16.30934 -16.10207 -15.62984 -15.36648 -15.16590 -14.86315 -14.73897 -14.42204 -14.19598 -14.08172 -13.84782 -13.69639 -13.68439 -12.98053 -12.91597 -12.74386 -12.69308 -12.66142 -12.32106 -12.25796 -11.99230 -11.90115 -11.79495 -11.67797 -11.46996 -11.39428 -11.05488 -10.91373 -10.53188 -10.27963 -10.18345 -9.16085 -8.15886 -6.24009 -0.56721 -0.16568 1.03409 1.26236 1.42808 1.43666 1.46476 1.53587 1.56602 1.84811 2.43969 2.63488 3.18634 3.34457 3.52348 3.70607 3.87609 3.89210 3.90295 3.99968 4.07440 4.18875 4.21328 4.27030 4.49466 4.57098 4.62443 4.72496 4.73929 4.76380 5.00179 5.02783 5.04668 5.09791 5.13667 5.17056 5.19542 5.32984 5.41859 5.45923 5.49879 5.51277 5.53734 5.67753 5.73977 5.86729 6.13725 6.26748 6.55993 6.61008 6.89952 7.43655 8.96813 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.033720 B = 0.002047 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.163358 B =13677.427984 C =14311.206208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.053 4.053 3 C -0.120 4.120 4 C 0.039 3.961 5 C -0.513 4.513 6 H 0.075 0.925 7 C -0.007 4.007 8 N -0.939 5.939 9 Si 0.963 3.037 10 H -0.275 1.275 11 H -0.289 1.289 12 H -0.258 1.258 13 C 0.088 3.912 14 O -0.331 6.331 15 C 0.501 3.499 16 O -0.545 6.545 17 C -0.115 4.115 18 C -0.067 4.067 19 C -0.085 4.085 20 C -0.090 4.090 21 C 0.134 3.866 22 N -0.339 5.339 23 C 0.053 3.947 24 C -0.264 4.264 25 C 0.050 3.950 26 N -0.350 5.350 27 C -0.083 4.083 28 H 0.071 0.929 29 H 0.058 0.942 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.058 0.942 33 H 0.071 0.929 34 H -0.012 1.012 35 H -0.012 1.012 36 H 0.260 0.740 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.160 0.840 40 H 0.190 0.810 41 H 0.180 0.820 42 H 0.222 0.778 43 H 0.185 0.815 44 H 0.212 0.788 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.825 11.116 30.945 33.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.053 4.053 3 C -0.177 4.177 4 C 0.002 3.998 5 C -0.551 4.551 6 H 0.093 0.907 7 C -0.204 4.204 8 N -0.580 5.580 9 Si 0.788 3.212 10 H -0.201 1.201 11 H -0.215 1.215 12 H -0.182 1.182 13 C 0.015 3.985 14 O -0.247 6.247 15 C 0.347 3.653 16 O -0.437 6.437 17 C -0.116 4.116 18 C -0.086 4.086 19 C -0.103 4.103 20 C -0.111 4.111 21 C 0.042 3.958 22 N -0.116 5.116 23 C -0.088 4.088 24 C -0.292 4.292 25 C -0.137 4.137 26 N -0.169 5.169 27 C -0.103 4.103 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.006 0.994 35 H 0.007 0.993 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.178 0.822 40 H 0.207 0.793 41 H 0.198 0.802 42 H 0.238 0.762 43 H 0.202 0.798 44 H 0.228 0.772 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.266 10.300 29.589 32.162 hybrid contribution 0.561 -0.764 -0.613 1.129 sum -6.705 9.535 28.977 31.233 Atomic orbital electron populations 1.21659 0.93197 1.00905 1.01941 1.20634 0.97350 0.96648 0.90706 1.21661 0.99634 0.94463 1.01962 1.19000 0.94451 0.94339 0.92047 1.21535 1.30611 1.12196 0.90778 0.90715 1.25990 0.95641 0.95881 1.02845 1.70124 1.38670 1.24972 1.24197 0.85474 0.79234 0.78056 0.78461 1.20080 1.21542 1.18195 1.23210 0.98321 0.95511 0.81488 1.86484 1.69087 1.55041 1.14084 1.21698 0.76808 0.81535 0.85255 1.90828 1.37243 1.27090 1.88546 1.18879 1.04598 0.99718 0.88452 1.21887 0.92876 0.91832 1.01968 1.21505 0.98842 1.00707 0.89270 1.21575 0.95221 0.92524 1.01751 1.17559 1.00157 0.96226 0.81840 1.46004 1.39381 1.21609 1.04593 1.23450 1.00872 1.01589 0.82916 1.22072 1.06510 0.98564 1.02082 1.24711 0.98615 1.00271 0.90091 1.77540 1.15328 1.03561 1.20481 1.20728 0.99408 0.99921 0.90288 0.91023 0.92285 0.94514 0.94524 0.92251 0.91016 0.99367 0.99349 0.93110 0.92600 0.92597 0.82225 0.79319 0.80238 0.76153 0.79757 0.77179 0.86500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.33 8.08 71.98 0.58 -3.75 16 2 C -0.05 -2.15 0.61 -52.18 -0.03 -2.18 16 3 C -0.12 -4.33 8.08 71.98 0.58 -3.75 16 4 C 0.04 2.02 4.04 29.85 0.12 2.14 16 5 C -0.51 -27.83 7.65 25.60 0.20 -27.63 16 6 H 0.07 3.78 5.68 -2.92 -0.02 3.77 16 7 C -0.01 -0.38 5.46 84.66 0.46 0.08 16 8 N -0.94 -57.43 13.29 21.45 0.28 -57.14 16 9 Si 0.96 43.76 29.54 68.60 2.03 45.78 16 10 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 11 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 12 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 13 C 0.09 3.41 4.33 71.98 0.31 3.73 16 14 O -0.33 -10.88 8.13 -56.19 -0.46 -11.34 16 15 C 0.50 16.84 7.90 70.33 0.56 17.40 16 16 O -0.55 -22.49 16.13 19.94 0.32 -22.17 16 17 C -0.11 -2.95 5.87 -20.11 -0.12 -3.07 16 18 C -0.07 -1.12 9.61 22.55 0.22 -0.90 16 19 C -0.09 -0.78 10.02 22.21 0.22 -0.56 16 20 C -0.09 -0.92 9.45 22.44 0.21 -0.71 16 21 C 0.13 2.65 6.68 38.05 0.25 2.91 16 22 N -0.34 -6.80 3.80 -187.86 -0.71 -7.52 16 23 C 0.05 0.60 10.80 83.50 0.90 1.50 16 24 C -0.26 -2.97 10.81 22.00 0.24 -2.73 16 25 C 0.05 0.82 12.02 85.24 1.03 1.85 16 26 N -0.35 -8.66 11.86 -56.97 -0.68 -9.33 16 27 C -0.08 -2.21 9.21 22.66 0.21 -2.00 16 28 H 0.07 2.12 7.68 -2.39 -0.02 2.10 16 29 H 0.06 2.22 6.62 -2.39 -0.02 2.20 16 30 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.06 2.22 6.62 -2.39 -0.02 2.21 16 33 H 0.07 2.12 7.68 -2.39 -0.02 2.10 16 34 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 35 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 36 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 37 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.16 2.30 7.61 -2.91 -0.02 2.27 16 40 H 0.19 0.12 8.06 -2.91 -0.02 0.10 16 41 H 0.18 0.22 6.72 -2.91 -0.02 0.20 16 42 H 0.22 0.25 7.03 -2.91 -0.02 0.23 16 43 H 0.19 0.81 8.06 -2.91 -0.02 0.78 16 44 H 0.21 2.10 8.06 -2.91 -0.02 2.08 16 45 H 0.12 3.86 7.28 -2.91 -0.02 3.84 16 Total: -1.00 -79.35 378.93 7.72 -71.63 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: 1.00 Total: 7.77 kcal Atomic # 6 Polarization: -23.62 SS G_CDS: 5.94 Total: -17.68 kcal Atomic # 7 Polarization: -72.88 SS G_CDS: -1.10 Total: -73.99 kcal Atomic # 8 Polarization: -33.38 SS G_CDS: -0.13 Total: -33.51 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.78 kcal Total: -79.35 7.72 -71.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195085767.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.429 kcal (2) G-P(sol) polarization free energy of solvation -79.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.53 seconds