Wall clock time and date at job start Tue Mar 31 2020 15:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47117 * 2 1 4 4 C 1.52999 * 109.46647 * 240.00172 * 2 1 3 5 5 C 1.50704 * 109.47383 * 60.00346 * 4 2 1 6 6 H 1.07998 * 119.99925 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99675 * 180.02562 * 5 4 2 8 8 N 1.31518 * 119.99609 * 179.97438 * 7 5 4 9 9 Si 1.86792 * 120.00374 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.46827 * 90.00437 * 9 7 5 11 11 H 1.48497 * 109.47506 * 210.00103 * 9 7 5 12 12 H 1.48499 * 109.47280 * 330.00549 * 9 7 5 13 13 C 1.52991 * 109.47086 * 120.00430 * 2 1 3 14 14 O 1.45204 * 109.47214 * 299.99500 * 13 2 1 15 15 C 1.34720 * 117.00474 * 180.02562 * 14 13 2 16 16 O 1.21489 * 120.00114 * 359.97438 * 15 14 13 17 17 C 1.47618 * 120.00473 * 180.02562 * 15 14 13 18 18 C 1.41220 * 126.33995 * 179.97438 * 17 15 14 19 19 C 1.36668 * 105.44561 * 179.97438 * 18 17 15 20 20 C 1.48006 * 126.58911 * 179.97438 * 19 18 17 21 21 C 1.39479 * 120.13831 * 359.97438 * 20 19 18 22 22 C 1.37985 * 119.86426 * 180.02562 * 21 20 19 23 23 C 1.38345 * 120.13301 * 0.02562 * 22 21 20 24 24 C 1.38338 * 120.27686 * 359.97438 * 23 22 21 25 25 C 1.37985 * 120.13568 * 359.97438 * 24 23 22 26 26 N 1.36380 * 106.81868 * 0.24410 * 19 18 17 27 27 H 0.97004 * 125.00549 * 179.72653 * 26 19 18 28 28 N 1.28448 * 109.98952 * 359.58303 * 26 19 18 29 29 H 1.09002 * 109.46948 * 299.99931 * 1 2 3 30 30 H 1.09002 * 109.47040 * 59.99373 * 1 2 3 31 31 H 1.08996 * 109.47024 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47060 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.46961 * 300.00030 * 3 2 1 34 34 H 1.09002 * 109.47155 * 60.00196 * 3 2 1 35 35 H 1.09002 * 109.47092 * 180.02562 * 4 2 1 36 36 H 1.08996 * 109.47342 * 299.99723 * 4 2 1 37 37 H 0.96996 * 120.00109 * 179.97438 * 8 7 5 38 38 H 1.08997 * 109.47115 * 179.97438 * 13 2 1 39 39 H 1.08991 * 109.47515 * 59.99449 * 13 2 1 40 40 H 1.07997 * 127.27993 * 359.97438 * 18 17 15 41 41 H 1.08003 * 120.07281 * 0.03473 * 21 20 19 42 42 H 1.08003 * 119.93459 * 180.27226 * 22 21 20 43 43 H 1.08000 * 119.85803 * 179.97438 * 23 22 21 44 44 H 1.07994 * 119.93308 * 179.97438 * 24 23 22 45 45 H 1.08000 * 120.06455 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5376 -0.0107 -2.4798 6 1 0.9165 0.8672 -2.3806 7 6 1.8703 -0.4822 -3.7320 8 7 1.4315 0.1376 -4.8058 9 14 2.9440 -2.0010 -3.9035 10 1 2.0853 -3.2117 -3.9484 11 1 3.7355 -1.9089 -5.1565 12 1 3.8648 -2.0900 -2.7418 13 6 2.0400 -0.7213 1.2491 14 8 1.5561 -0.0368 2.4348 15 6 1.9185 -0.5485 3.6272 16 8 2.6193 -1.5397 3.6752 17 6 1.4632 0.0946 4.8755 18 6 1.7606 -0.3262 6.1903 19 6 1.1293 0.5669 7.0099 20 6 1.1326 0.5611 8.4899 21 6 1.8298 -0.4270 9.1848 22 6 1.8287 -0.4273 10.5647 23 6 1.1375 0.5496 11.2588 24 6 0.4441 1.5324 10.5753 25 6 0.4385 1.5440 9.1955 26 7 0.4905 1.4608 6.2018 27 1 -0.0441 2.2083 6.5122 28 7 0.7037 1.1688 4.9692 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 3.1300 -0.7217 -1.2491 36 1 1.6766 -1.7489 -1.2493 37 1 1.6657 -0.1938 -5.6868 38 1 3.1300 -0.7217 1.2489 39 1 1.6767 -1.7489 1.2492 40 1 2.3602 -1.1744 6.4858 41 1 2.3696 -1.1904 8.6441 42 1 2.3718 -1.1893 11.1039 43 1 1.1393 0.5449 12.3388 44 1 -0.0939 2.2921 11.1228 45 1 -0.1035 2.3115 8.6631 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195097723.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:12 Heat of formation + Delta-G solvation = -1.095823 kcal Electronic energy + Delta-G solvation = -26369.910067 eV Core-core repulsion = 22546.602255 eV Total energy + Delta-G solvation = -3823.307811 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.98016 -40.03120 -39.44148 -37.21713 -35.41041 -33.23633 -32.52107 -32.23614 -31.35926 -29.38872 -27.96943 -26.72552 -26.37605 -24.67742 -23.79368 -23.05001 -22.28439 -21.29594 -20.17251 -18.90703 -18.13048 -17.51587 -16.82633 -16.74016 -16.43766 -16.04528 -15.57420 -15.55963 -15.25710 -14.22586 -14.16835 -13.87304 -13.82238 -13.74125 -13.54982 -13.36709 -13.12595 -12.49556 -12.35175 -12.20834 -11.98109 -11.60419 -11.30623 -11.20745 -10.99554 -10.95198 -10.69574 -10.54308 -10.47093 -10.36575 -10.29482 -9.82968 -9.77294 -9.69555 -9.52444 -9.48410 -8.95656 -8.65234 -8.50620 -6.00880 -3.97994 0.33235 0.83841 1.24184 1.94039 2.28037 2.85186 3.09271 3.33483 3.33922 3.41279 3.45018 3.97087 4.10577 4.31589 4.37927 4.48102 4.57404 4.78669 4.88143 5.01387 5.09594 5.28837 5.31074 5.35470 5.43130 5.46164 5.46859 5.75536 5.82980 5.90766 5.92276 5.96060 6.02313 6.15625 6.33764 6.35959 6.51975 6.57246 6.58426 6.73717 6.74251 7.02275 7.12231 7.14168 7.26013 7.39594 7.41953 7.79665 7.94189 8.57132 9.04027 9.61202 11.11822 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.037070 B = 0.001967 C = 0.001892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.156162 B =14233.237830 C =14792.029669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.049 4.049 3 C -0.128 4.128 4 C -0.003 4.003 5 C -0.508 4.508 6 H 0.080 0.920 7 C 0.066 3.934 8 N -0.903 5.903 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.076 3.924 14 O -0.331 6.331 15 C 0.549 3.451 16 O -0.503 6.503 17 C 0.007 3.993 18 C -0.151 4.151 19 C 0.049 3.951 20 C -0.019 4.019 21 C -0.095 4.095 22 C -0.112 4.112 23 C -0.116 4.116 24 C -0.113 4.113 25 C -0.116 4.116 26 N -0.374 5.374 27 H 0.448 0.552 28 N -0.212 5.212 29 H 0.043 0.957 30 H 0.070 0.930 31 H 0.042 0.958 32 H 0.042 0.958 33 H 0.071 0.929 34 H 0.043 0.957 35 H 0.018 0.982 36 H 0.014 0.986 37 H 0.262 0.738 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.170 0.830 41 H 0.132 0.868 42 H 0.129 0.871 43 H 0.125 0.875 44 H 0.127 0.873 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.603 2.290 33.960 34.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.049 4.049 3 C -0.185 4.185 4 C -0.040 4.040 5 C -0.546 4.546 6 H 0.098 0.902 7 C -0.135 4.135 8 N -0.542 5.542 9 Si 0.702 3.298 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 C 0.002 3.998 14 O -0.246 6.246 15 C 0.390 3.610 16 O -0.390 6.390 17 C -0.151 4.151 18 C -0.178 4.178 19 C -0.074 4.074 20 C -0.021 4.021 21 C -0.114 4.114 22 C -0.130 4.130 23 C -0.134 4.134 24 C -0.131 4.131 25 C -0.135 4.135 26 N -0.091 5.091 27 H 0.293 0.707 28 N -0.050 5.050 29 H 0.062 0.938 30 H 0.089 0.911 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.089 0.911 34 H 0.062 0.938 35 H 0.037 0.963 36 H 0.032 0.968 37 H 0.072 0.928 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.187 0.813 41 H 0.150 0.850 42 H 0.147 0.853 43 H 0.143 0.857 44 H 0.145 0.855 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.904 2.721 32.983 33.150 hybrid contribution 0.756 -1.110 0.321 1.381 sum -1.147 1.611 33.305 33.364 Atomic orbital electron populations 1.21736 0.94324 1.01005 1.01463 1.20578 0.96542 0.96269 0.91482 1.21730 0.99877 0.95434 1.01460 1.19630 0.96310 0.95552 0.92547 1.21050 1.31786 1.13384 0.88412 0.90206 1.24992 0.95743 0.96768 0.95956 1.69901 1.45923 1.40555 0.97843 0.86860 0.81327 0.83952 0.77645 1.20359 1.21464 1.19033 1.23586 0.99039 0.96009 0.81122 1.86631 1.68772 1.55076 1.14106 1.19528 0.77117 0.81186 0.83135 1.90853 1.35517 1.24749 1.87866 1.20782 1.04592 0.96990 0.92734 1.21681 1.04476 1.02043 0.89642 1.19876 1.01594 0.94504 0.91453 1.17884 0.99563 0.96937 0.87700 1.21194 0.98211 0.97660 0.94329 1.21152 0.99151 0.98873 0.93836 1.21305 0.97058 0.94733 1.00296 1.21062 0.99326 0.98907 0.93772 1.21081 0.99554 0.98102 0.94738 1.43675 1.38306 1.24358 1.02763 0.70660 1.73779 1.15522 1.15215 1.00457 0.93800 0.91058 0.93840 0.93838 0.91050 0.93804 0.96336 0.96788 0.92800 0.91384 0.91395 0.81298 0.84984 0.85270 0.85660 0.85501 0.86275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.51 8.08 37.16 0.30 -2.21 16 2 C -0.05 -0.98 0.61 -154.51 -0.09 -1.08 16 3 C -0.13 -2.51 8.08 37.16 0.30 -2.21 16 4 C 0.00 -0.07 3.11 -27.88 -0.09 -0.16 16 5 C -0.51 -14.02 8.20 -34.44 -0.28 -14.30 16 6 H 0.08 2.34 5.92 -52.49 -0.31 2.03 16 7 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 8 N -0.90 -27.58 13.96 55.43 0.77 -26.80 16 9 Si 0.87 21.77 27.47 -169.99 -4.67 17.10 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.27 -6.39 6.54 56.52 0.37 -6.02 16 13 C 0.08 1.39 4.33 37.15 0.16 1.55 16 14 O -0.33 -5.82 8.89 -40.55 -0.36 -6.18 16 15 C 0.55 9.08 7.97 34.56 0.28 9.35 16 16 O -0.50 -9.08 16.71 -19.26 -0.32 -9.41 16 17 C 0.01 0.09 7.14 -82.88 -0.59 -0.50 16 18 C -0.15 -1.67 10.16 -39.02 -0.40 -2.06 16 19 C 0.05 0.44 6.98 -82.41 -0.58 -0.13 16 20 C -0.02 -0.14 5.87 -104.97 -0.62 -0.75 16 21 C -0.09 -0.61 9.58 -39.21 -0.38 -0.99 16 22 C -0.11 -0.59 10.03 -39.63 -0.40 -0.99 16 23 C -0.12 -0.55 10.04 -39.51 -0.40 -0.95 16 24 C -0.11 -0.55 10.03 -39.64 -0.40 -0.95 16 25 C -0.12 -0.65 9.71 -39.21 -0.38 -1.03 16 26 N -0.37 -3.33 6.80 33.31 0.23 -3.10 16 27 H 0.45 2.29 8.08 -190.45 -1.54 0.75 16 28 N -0.21 -2.72 12.22 33.35 0.41 -2.31 16 29 H 0.04 0.79 7.68 -51.93 -0.40 0.39 16 30 H 0.07 1.51 6.62 -51.93 -0.34 1.17 16 31 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 1.51 6.62 -51.93 -0.34 1.17 16 34 H 0.04 0.79 7.68 -51.93 -0.40 0.39 16 35 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 36 H 0.01 0.33 7.57 -51.93 -0.39 -0.07 16 37 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 38 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.17 1.57 7.39 -52.49 -0.39 1.18 16 41 H 0.13 0.72 7.09 -52.48 -0.37 0.35 16 42 H 0.13 0.42 8.06 -52.48 -0.42 0.00 16 43 H 0.13 0.35 8.06 -52.49 -0.42 -0.08 16 44 H 0.13 0.36 8.06 -52.49 -0.42 -0.06 16 45 H 0.12 0.41 7.19 -52.49 -0.38 0.03 16 LS Contribution 376.27 15.07 5.67 5.67 Total: -1.00 -33.60 376.27 -9.29 -42.89 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -7.37 Total: -2.27 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: -3.65 Total: -15.59 kcal Atomic # 7 Polarization: -33.62 SS G_CDS: 1.41 Total: -32.21 kcal Atomic # 8 Polarization: -14.91 SS G_CDS: -0.68 Total: -15.59 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.60 -9.29 -42.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195097723.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.794 kcal (2) G-P(sol) polarization free energy of solvation -33.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds