Wall clock time and date at job start Tue Mar 31 2020 15:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47117 * 2 1 4 4 C 1.52999 * 109.46647 * 240.00172 * 2 1 3 5 5 C 1.50704 * 109.47383 * 60.00346 * 4 2 1 6 6 H 1.07998 * 119.99925 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99675 * 180.02562 * 5 4 2 8 8 N 1.31518 * 119.99609 * 179.97438 * 7 5 4 9 9 Si 1.86792 * 120.00374 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.46827 * 90.00437 * 9 7 5 11 11 H 1.48497 * 109.47506 * 210.00103 * 9 7 5 12 12 H 1.48499 * 109.47280 * 330.00549 * 9 7 5 13 13 C 1.52991 * 109.47086 * 120.00430 * 2 1 3 14 14 O 1.45204 * 109.47214 * 299.99500 * 13 2 1 15 15 C 1.34720 * 117.00474 * 180.02562 * 14 13 2 16 16 O 1.21489 * 120.00114 * 359.97438 * 15 14 13 17 17 C 1.47618 * 120.00473 * 180.02562 * 15 14 13 18 18 C 1.41220 * 126.33995 * 179.97438 * 17 15 14 19 19 C 1.36668 * 105.44561 * 179.97438 * 18 17 15 20 20 C 1.48006 * 126.58911 * 179.97438 * 19 18 17 21 21 C 1.39479 * 120.13831 * 359.97438 * 20 19 18 22 22 C 1.37985 * 119.86426 * 180.02562 * 21 20 19 23 23 C 1.38345 * 120.13301 * 0.02562 * 22 21 20 24 24 C 1.38338 * 120.27686 * 359.97438 * 23 22 21 25 25 C 1.37985 * 120.13568 * 359.97438 * 24 23 22 26 26 N 1.36380 * 106.81868 * 0.24410 * 19 18 17 27 27 H 0.97004 * 125.00549 * 179.72653 * 26 19 18 28 28 N 1.28448 * 109.98952 * 359.58303 * 26 19 18 29 29 H 1.09002 * 109.46948 * 299.99931 * 1 2 3 30 30 H 1.09002 * 109.47040 * 59.99373 * 1 2 3 31 31 H 1.08996 * 109.47024 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47060 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.46961 * 300.00030 * 3 2 1 34 34 H 1.09002 * 109.47155 * 60.00196 * 3 2 1 35 35 H 1.09002 * 109.47092 * 180.02562 * 4 2 1 36 36 H 1.08996 * 109.47342 * 299.99723 * 4 2 1 37 37 H 0.96996 * 120.00109 * 179.97438 * 8 7 5 38 38 H 1.08997 * 109.47115 * 179.97438 * 13 2 1 39 39 H 1.08991 * 109.47515 * 59.99449 * 13 2 1 40 40 H 1.07997 * 127.27993 * 359.97438 * 18 17 15 41 41 H 1.08003 * 120.07281 * 0.03473 * 21 20 19 42 42 H 1.08003 * 119.93459 * 180.27226 * 22 21 20 43 43 H 1.08000 * 119.85803 * 179.97438 * 23 22 21 44 44 H 1.07994 * 119.93308 * 179.97438 * 24 23 22 45 45 H 1.08000 * 120.06455 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.5376 -0.0107 -2.4798 6 1 0.9165 0.8672 -2.3806 7 6 1.8703 -0.4822 -3.7320 8 7 1.4315 0.1376 -4.8058 9 14 2.9440 -2.0010 -3.9035 10 1 2.0853 -3.2117 -3.9484 11 1 3.7355 -1.9089 -5.1565 12 1 3.8648 -2.0900 -2.7418 13 6 2.0400 -0.7213 1.2491 14 8 1.5561 -0.0368 2.4348 15 6 1.9185 -0.5485 3.6272 16 8 2.6193 -1.5397 3.6752 17 6 1.4632 0.0946 4.8755 18 6 1.7606 -0.3262 6.1903 19 6 1.1293 0.5669 7.0099 20 6 1.1326 0.5611 8.4899 21 6 1.8298 -0.4270 9.1848 22 6 1.8287 -0.4273 10.5647 23 6 1.1375 0.5496 11.2588 24 6 0.4441 1.5324 10.5753 25 6 0.4385 1.5440 9.1955 26 7 0.4905 1.4608 6.2018 27 1 -0.0441 2.2083 6.5122 28 7 0.7037 1.1688 4.9692 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 3.1300 -0.7217 -1.2491 36 1 1.6766 -1.7489 -1.2493 37 1 1.6657 -0.1938 -5.6868 38 1 3.1300 -0.7217 1.2489 39 1 1.6767 -1.7489 1.2492 40 1 2.3602 -1.1744 6.4858 41 1 2.3696 -1.1904 8.6441 42 1 2.3718 -1.1893 11.1039 43 1 1.1393 0.5449 12.3388 44 1 -0.0939 2.2921 11.1228 45 1 -0.1035 2.3115 8.6631 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195097723.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:09 Heat of formation + Delta-G solvation = -19.687528 kcal Electronic energy + Delta-G solvation = -26370.716263 eV Core-core repulsion = 22546.602255 eV Total energy + Delta-G solvation = -3824.114008 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 2.37 seconds Orbital eigenvalues (eV) -43.81112 -41.35108 -39.86054 -38.76750 -36.92114 -34.41054 -33.82988 -33.31120 -31.79062 -30.11170 -29.84263 -28.17527 -27.99967 -25.89756 -24.45779 -24.19343 -23.39633 -21.97530 -21.31202 -19.85819 -19.48162 -18.90571 -18.63114 -17.64155 -17.34706 -17.19790 -16.57655 -16.22991 -16.09229 -15.75058 -15.46728 -15.28125 -14.84706 -14.72467 -14.26975 -14.25378 -14.20882 -14.10854 -13.79905 -13.78432 -13.06090 -12.86660 -12.70375 -12.45339 -12.29074 -12.18151 -12.02752 -12.00691 -11.93304 -11.84880 -11.71647 -11.37036 -11.24115 -11.10451 -10.94862 -10.70701 -10.65473 -9.89902 -9.24149 -8.22110 -6.23300 -0.19389 0.17050 0.46584 1.29657 1.34307 1.37326 1.39354 1.49886 1.87474 1.97505 2.39542 2.91865 3.12495 3.14067 3.39240 3.75279 3.87684 3.92303 4.02967 4.05834 4.17583 4.21834 4.30664 4.35070 4.51121 4.54305 4.56754 4.66386 4.72917 4.92560 4.97077 4.98375 5.05664 5.09565 5.13670 5.23851 5.33700 5.36648 5.38999 5.46563 5.50007 5.52694 5.59851 5.62190 5.74004 5.86222 6.01737 6.37112 6.48383 6.75277 6.83168 7.38809 8.93552 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.037070 B = 0.001967 C = 0.001892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.156162 B =14233.237830 C =14792.029669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.048 4.048 3 C -0.121 4.121 4 C -0.002 4.002 5 C -0.505 4.505 6 H 0.049 0.951 7 C 0.005 3.995 8 N -0.950 5.950 9 Si 0.938 3.062 10 H -0.270 1.270 11 H -0.287 1.287 12 H -0.249 1.249 13 C 0.083 3.917 14 O -0.336 6.336 15 C 0.549 3.451 16 O -0.524 6.524 17 C -0.020 4.020 18 C -0.165 4.165 19 C 0.072 3.928 20 C -0.043 4.043 21 C -0.105 4.105 22 C -0.121 4.121 23 C -0.114 4.114 24 C -0.120 4.120 25 C -0.118 4.118 26 N -0.355 5.355 27 H 0.464 0.536 28 N -0.234 5.234 29 H 0.059 0.941 30 H 0.046 0.954 31 H 0.048 0.952 32 H 0.047 0.953 33 H 0.046 0.954 34 H 0.059 0.941 35 H 0.021 0.979 36 H 0.019 0.981 37 H 0.263 0.737 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.179 0.821 41 H 0.135 0.865 42 H 0.147 0.853 43 H 0.147 0.853 44 H 0.149 0.851 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.307 1.847 37.489 37.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.048 4.048 3 C -0.178 4.178 4 C -0.039 4.039 5 C -0.543 4.543 6 H 0.067 0.933 7 C -0.191 4.191 8 N -0.592 5.592 9 Si 0.762 3.238 10 H -0.195 1.195 11 H -0.213 1.213 12 H -0.173 1.173 13 C 0.009 3.991 14 O -0.251 6.251 15 C 0.393 3.607 16 O -0.412 6.412 17 C -0.176 4.176 18 C -0.192 4.192 19 C -0.053 4.053 20 C -0.045 4.045 21 C -0.124 4.124 22 C -0.139 4.139 23 C -0.133 4.133 24 C -0.137 4.137 25 C -0.137 4.137 26 N -0.074 5.074 27 H 0.313 0.687 28 N -0.073 5.073 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.039 0.961 36 H 0.038 0.962 37 H 0.072 0.928 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.197 0.803 41 H 0.153 0.847 42 H 0.165 0.835 43 H 0.165 0.835 44 H 0.167 0.833 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.619 2.293 36.540 36.647 hybrid contribution 0.578 -0.851 -0.558 1.170 sum -1.041 1.442 35.982 36.025 Atomic orbital electron populations 1.21648 0.94005 1.01194 1.00989 1.20459 0.96803 0.96324 0.91262 1.21643 1.00105 0.95078 1.00991 1.19565 0.96289 0.95635 0.92410 1.21301 1.30541 1.12395 0.90074 0.93275 1.25863 0.97454 1.00120 0.95696 1.70047 1.47986 1.42684 0.98454 0.85843 0.79788 0.80068 0.78084 1.19516 1.21330 1.17268 1.23308 0.99126 0.95789 0.80836 1.86613 1.68991 1.55161 1.14351 1.19911 0.76565 0.80955 0.83297 1.90828 1.36585 1.25720 1.88067 1.20599 1.06426 0.98208 0.92346 1.21853 1.05480 1.03146 0.88737 1.20074 0.99746 0.93173 0.92269 1.17934 1.01549 0.98489 0.86481 1.21390 0.98222 0.97692 0.95126 1.21424 0.99386 0.99587 0.93460 1.21681 0.95932 0.94068 1.01583 1.21398 0.99293 0.99438 0.93619 1.21372 0.98989 0.97926 0.95379 1.43712 1.37506 1.24446 1.01782 0.68694 1.73689 1.16083 1.15304 1.02220 0.92175 0.93508 0.93322 0.93358 0.93491 0.92177 0.96078 0.96225 0.92772 0.91014 0.90949 0.80328 0.84670 0.83543 0.83510 0.83318 0.84355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.74 8.08 71.98 0.58 -4.16 16 2 C -0.05 -1.94 0.61 -52.18 -0.03 -1.97 16 3 C -0.12 -4.74 8.08 71.98 0.58 -4.16 16 4 C 0.00 -0.07 3.11 29.85 0.09 0.02 16 5 C -0.51 -28.38 8.20 25.60 0.21 -28.17 16 6 H 0.05 3.00 5.92 -2.91 -0.02 2.99 16 7 C 0.00 0.29 5.47 84.65 0.46 0.75 16 8 N -0.95 -59.54 13.96 21.45 0.30 -59.24 16 9 Si 0.94 44.74 27.47 68.60 1.88 46.63 16 10 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 11 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 12 H -0.25 -11.12 6.54 99.48 0.65 -10.47 16 13 C 0.08 2.96 4.33 71.98 0.31 3.27 16 14 O -0.34 -11.57 8.89 -56.30 -0.50 -12.07 16 15 C 0.55 17.96 7.97 70.30 0.56 18.52 16 16 O -0.52 -18.74 16.71 19.87 0.33 -18.41 16 17 C -0.02 -0.54 7.14 42.35 0.30 -0.24 16 18 C -0.17 -3.51 10.16 22.64 0.23 -3.28 16 19 C 0.07 1.19 6.98 40.66 0.28 1.47 16 20 C -0.04 -0.54 5.87 -20.09 -0.12 -0.65 16 21 C -0.11 -1.18 9.58 22.51 0.22 -0.97 16 22 C -0.12 -0.98 10.03 22.24 0.22 -0.76 16 23 C -0.11 -0.75 10.04 22.32 0.22 -0.53 16 24 C -0.12 -0.79 10.03 22.23 0.22 -0.57 16 25 C -0.12 -1.02 9.71 22.51 0.22 -0.80 16 26 N -0.35 -5.74 6.80 -48.52 -0.33 -6.07 16 27 H 0.46 3.74 8.08 -220.00 -1.78 1.96 16 28 N -0.23 -5.77 12.22 -48.39 -0.59 -6.36 16 29 H 0.06 2.13 7.68 -2.39 -0.02 2.11 16 30 H 0.05 2.03 6.62 -2.39 -0.02 2.02 16 31 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.05 1.80 8.14 -2.39 -0.02 1.79 16 33 H 0.05 2.04 6.62 -2.39 -0.02 2.03 16 34 H 0.06 2.13 7.68 -2.39 -0.02 2.11 16 35 H 0.02 0.98 7.20 -2.39 -0.02 0.96 16 36 H 0.02 0.89 7.57 -2.39 -0.02 0.88 16 37 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 38 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 39 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 40 H 0.18 3.24 7.39 -2.91 -0.02 3.21 16 41 H 0.14 1.32 7.09 -2.91 -0.02 1.30 16 42 H 0.15 0.59 8.06 -2.91 -0.02 0.57 16 43 H 0.15 0.28 8.06 -2.91 -0.02 0.26 16 44 H 0.15 0.29 8.06 -2.91 -0.02 0.27 16 45 H 0.14 0.53 7.19 -2.91 -0.02 0.51 16 Total: -1.00 -73.18 376.27 4.85 -68.33 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -0.82 Total: 9.40 kcal Atomic # 6 Polarization: -26.78 SS G_CDS: 4.57 Total: -22.21 kcal Atomic # 7 Polarization: -71.04 SS G_CDS: -0.62 Total: -71.66 kcal Atomic # 8 Polarization: -30.31 SS G_CDS: -0.17 Total: -30.48 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.88 Total: 46.63 kcal Total: -73.18 4.85 -68.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195097723.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.642 kcal (2) G-P(sol) polarization free energy of solvation -73.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.37 seconds