Wall clock time and date at job start Tue Mar 31 2020 15:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47272 * 2 1 4 4 C 1.53007 * 109.47124 * 120.00245 * 2 1 3 5 5 C 1.53000 * 109.47295 * 54.99945 * 4 2 1 6 6 C 1.47199 * 109.46900 * 294.99868 * 4 2 1 7 7 N 3.43554 * 86.99935 * 79.49364 * 2 1 3 8 8 N 1.46505 * 109.47043 * 175.00041 * 4 2 1 9 9 C 1.34765 * 119.99982 * 180.02562 * 8 4 2 10 10 O 1.21727 * 120.00304 * 359.97438 * 9 8 4 11 11 C 1.46252 * 120.00137 * 179.97438 * 9 8 4 12 12 C 1.35023 * 120.00322 * 173.21039 * 11 9 8 13 13 C 1.46969 * 120.00158 * 348.68527 * 12 11 9 14 14 C 1.40023 * 120.09487 * 316.40212 * 13 12 11 15 15 C 1.37600 * 119.89371 * 179.69657 * 14 13 12 16 16 C 1.39171 * 120.10048 * 0.59668 * 15 14 13 17 17 O 1.35572 * 119.90014 * 179.69986 * 16 15 14 18 18 C 1.34783 * 117.00562 * 174.33973 * 17 16 15 19 19 H 1.08000 * 119.99249 * 5.05514 * 18 17 16 20 20 C 1.38709 * 120.00454 * 185.06198 * 18 17 16 21 21 N 1.31501 * 120.00476 * 179.97438 * 20 18 17 22 22 Si 1.86807 * 119.99961 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47208 * 90.00197 * 22 20 18 24 24 H 1.48500 * 109.47284 * 210.00152 * 22 20 18 25 25 H 1.48502 * 109.47040 * 330.00313 * 22 20 18 26 26 C 1.39176 * 120.20418 * 359.67425 * 16 15 14 27 27 C 1.37599 * 120.09973 * 0.02664 * 26 16 15 28 28 H 1.09000 * 109.47192 * 299.99635 * 1 2 3 29 29 H 1.08996 * 109.47333 * 59.99598 * 1 2 3 30 30 H 1.09006 * 109.47420 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47050 * 239.99843 * 2 1 3 32 32 H 1.09006 * 109.47371 * 60.00149 * 3 2 1 33 33 H 1.08996 * 109.47298 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47270 * 300.00441 * 3 2 1 35 35 H 1.09004 * 109.46885 * 300.00419 * 5 4 2 36 36 H 1.08997 * 109.46878 * 59.99702 * 5 4 2 37 37 H 1.09000 * 109.46911 * 180.02562 * 5 4 2 38 38 H 0.97006 * 119.99447 * 359.97438 * 8 4 2 39 39 H 1.07994 * 120.00135 * 353.20900 * 11 9 8 40 40 H 1.08001 * 120.00464 * 168.68312 * 12 11 9 41 41 H 1.08001 * 120.05187 * 359.97438 * 14 13 12 42 42 H 1.08006 * 119.94588 * 180.27520 * 15 14 13 43 43 H 0.97002 * 120.00382 * 179.97438 * 21 20 18 44 44 H 1.07998 * 119.94953 * 180.02562 * 26 16 15 45 45 H 1.08006 * 120.04749 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.4299 -2.1230 1.3137 6 6 1.6506 0.0389 2.4481 7 7 1.3501 0.6256 3.3733 8 7 3.5001 -0.8264 1.1906 9 6 4.1730 -1.4292 2.1906 10 8 3.5677 -1.8860 3.1428 11 6 5.6305 -1.5347 2.1317 12 6 6.3161 -2.0135 3.1918 13 6 5.6395 -2.1942 4.4839 14 6 4.7761 -1.2042 4.9688 15 6 4.1399 -1.3805 6.1761 16 6 4.3630 -2.5349 6.9207 17 8 3.7387 -2.7016 8.1125 18 6 3.9036 -3.8888 8.7290 19 1 4.5758 -4.6245 8.3127 20 6 3.2101 -4.1656 9.8979 21 7 3.3706 -5.3241 10.4991 22 14 2.0478 -2.8928 10.6181 23 1 0.6871 -3.0915 10.0574 24 1 2.0016 -3.0439 12.0947 25 1 2.5307 -1.5311 10.2747 26 6 5.2246 -3.5190 6.4453 27 6 5.8605 -3.3542 5.2362 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.1299 1.4424 0.0005 34 1 1.6766 1.9563 -0.8899 35 1 0.3436 -2.0447 1.3573 36 1 1.7182 -2.6858 0.4259 37 1 1.7929 -2.6366 2.2039 38 1 3.9823 -0.4628 0.4315 39 1 6.1584 -1.2296 1.2404 40 1 7.3619 -2.2637 3.0904 41 1 4.6064 -0.3057 4.3941 42 1 3.4703 -0.6194 6.5489 43 1 2.8859 -5.5175 11.3168 44 1 5.3945 -4.4135 7.0262 45 1 6.5287 -4.1186 4.8679 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000254968114.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:17 Heat of formation + Delta-G solvation = 19.677225 kcal Electronic energy + Delta-G solvation = -27746.375626 eV Core-core repulsion = 23923.968602 eV Total energy + Delta-G solvation = -3822.407024 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.58988 -39.13604 -38.14401 -36.50192 -35.50740 -33.51068 -33.15152 -32.29337 -30.52192 -30.19729 -28.35064 -27.39209 -25.44693 -24.78210 -22.97636 -21.99702 -21.88570 -20.94128 -19.28524 -17.90591 -17.71019 -17.43913 -16.87771 -15.88817 -15.16144 -14.93115 -14.78576 -14.77359 -14.24906 -13.94567 -13.81622 -13.63446 -13.56296 -13.49083 -13.13921 -12.98966 -12.72446 -12.67524 -12.57445 -12.35611 -12.25247 -12.16083 -12.05880 -11.89170 -11.59310 -11.38989 -11.26303 -11.10499 -10.92440 -10.76613 -10.66262 -10.13355 -9.57279 -9.46385 -9.37855 -9.22807 -8.75600 -8.02304 -6.99279 -6.41871 -4.05500 1.11438 2.30990 2.47567 2.59680 2.81206 3.24200 3.28836 3.34536 3.41983 3.43909 3.81611 4.18183 4.25719 4.42947 4.57427 4.61744 4.85021 4.90176 5.01700 5.10949 5.13626 5.15140 5.22846 5.38458 5.40175 5.44772 5.50596 5.53967 5.58910 5.65849 5.75180 5.79994 5.82806 6.13041 6.18006 6.23440 6.26240 6.34897 6.49760 6.65875 6.91687 7.17940 7.30386 7.37470 7.44629 7.59878 7.67346 7.84624 8.06466 8.34077 8.93552 9.58189 10.65388 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014777 B = 0.003289 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.340319 B = 8511.277918 C = 9691.777154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.092 4.092 3 C -0.156 4.156 4 C 0.285 3.715 5 C -0.167 4.167 6 C 0.205 3.795 7 N -0.412 5.412 8 N -0.727 5.727 9 C 0.540 3.460 10 O -0.498 6.498 11 C -0.266 4.266 12 C 0.032 3.968 13 C -0.184 4.184 14 C 0.011 3.989 15 C -0.200 4.200 16 C 0.178 3.822 17 O -0.212 6.212 18 C -0.387 4.387 19 H 0.108 0.892 20 C 0.065 3.935 21 N -0.877 5.877 22 Si 0.904 3.096 23 H -0.273 1.273 24 H -0.281 1.281 25 H -0.259 1.259 26 C -0.238 4.238 27 C -0.042 4.042 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.091 0.909 38 H 0.404 0.596 39 H 0.124 0.876 40 H 0.125 0.875 41 H 0.099 0.901 42 H 0.112 0.888 43 H 0.280 0.720 44 H 0.132 0.868 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.951 9.411 -26.315 27.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.112 4.112 3 C -0.213 4.213 4 C 0.195 3.805 5 C -0.226 4.226 6 C -0.115 4.115 7 N -0.087 5.087 8 N -0.383 5.383 9 C 0.331 3.669 10 O -0.373 6.373 11 C -0.287 4.287 12 C 0.012 3.988 13 C -0.185 4.185 14 C -0.007 4.007 15 C -0.219 4.219 16 C 0.125 3.875 17 O -0.116 6.116 18 C -0.463 4.463 19 H 0.126 0.874 20 C -0.139 4.139 21 N -0.514 5.514 22 Si 0.729 3.271 23 H -0.198 1.198 24 H -0.207 1.207 25 H -0.183 1.183 26 C -0.257 4.257 27 C -0.060 4.060 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.116 0.884 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.110 0.890 38 H 0.239 0.761 39 H 0.142 0.858 40 H 0.142 0.858 41 H 0.117 0.883 42 H 0.130 0.870 43 H 0.090 0.910 44 H 0.150 0.850 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.149 9.951 -23.849 25.842 hybrid contribution -0.079 0.243 -0.382 0.460 sum -0.228 10.194 -24.231 26.289 Atomic orbital electron populations 1.21959 0.93444 1.03072 1.02652 1.21401 0.97417 0.96640 0.95726 1.21954 1.01446 0.95221 1.02682 1.17605 0.81750 0.94163 0.87028 1.22343 1.01339 0.93678 1.05253 1.29132 0.94345 0.93579 0.94447 1.81185 1.07360 1.10320 1.09876 1.46131 1.05085 1.61711 1.25335 1.18616 0.88837 0.77732 0.81751 1.91005 1.69681 1.45461 1.31166 1.22536 0.92443 1.12834 1.00929 1.22375 0.97982 0.87261 0.91156 1.18343 1.06159 0.98107 0.95897 1.20402 0.91260 0.96508 0.92571 1.20007 1.06607 0.98505 0.96812 1.19266 0.90381 0.93125 0.84724 1.83513 1.63319 1.36703 1.28077 1.20832 1.27562 0.90612 1.07263 0.87423 1.24475 0.97232 0.96696 0.95502 1.69619 1.41612 1.21324 1.18849 0.86205 0.80905 0.82259 0.77736 1.19797 1.20683 1.18302 1.21064 1.03702 1.02027 0.98892 1.20782 0.96857 0.95355 0.93000 0.92398 0.91492 0.91224 0.88419 0.92424 0.92062 0.91531 0.90805 0.90596 0.89011 0.76054 0.85794 0.85764 0.88259 0.87014 0.90984 0.85011 0.87262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 8.51 37.15 0.32 -0.59 16 2 C -0.09 -0.54 2.32 -90.62 -0.21 -0.75 16 3 C -0.16 -0.91 8.74 37.15 0.32 -0.59 16 4 C 0.28 2.68 0.51 -134.60 -0.07 2.61 16 5 C -0.17 -1.63 7.87 37.16 0.29 -1.34 16 6 C 0.21 2.83 10.22 -20.76 -0.21 2.62 16 7 N -0.41 -7.02 18.54 42.15 0.78 -6.24 16 8 N -0.73 -6.45 4.81 -51.65 -0.25 -6.70 16 9 C 0.54 6.93 6.18 -13.05 -0.08 6.85 16 10 O -0.50 -8.72 9.38 5.16 0.05 -8.67 16 11 C -0.27 -2.91 9.90 -37.51 -0.37 -3.28 16 12 C 0.03 0.41 9.80 -37.19 -0.36 0.04 16 13 C -0.18 -3.25 4.54 -105.03 -0.48 -3.73 16 14 C 0.01 0.22 6.59 -39.15 -0.26 -0.04 16 15 C -0.20 -4.54 9.97 -39.47 -0.39 -4.93 16 16 C 0.18 4.44 6.66 -38.89 -0.26 4.18 16 17 O -0.21 -5.94 8.57 0.73 0.01 -5.93 16 18 C -0.39 -11.32 9.94 30.91 0.31 -11.01 16 19 H 0.11 3.19 5.41 -52.49 -0.28 2.90 16 20 C 0.06 1.87 5.49 -17.52 -0.10 1.77 16 21 N -0.88 -25.84 13.96 55.48 0.77 -25.07 16 22 Si 0.90 22.61 28.62 -169.99 -4.86 17.74 16 23 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 25 H -0.26 -6.56 7.11 56.52 0.40 -6.16 16 26 C -0.24 -5.41 9.14 -39.47 -0.36 -5.77 16 27 C -0.04 -0.79 9.78 -39.15 -0.38 -1.17 16 28 H 0.06 0.45 7.38 -51.93 -0.38 0.07 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.37 6.34 -51.93 -0.33 0.04 16 31 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.48 7.09 -51.93 -0.37 0.11 16 33 H 0.06 0.30 7.18 -51.93 -0.37 -0.07 16 34 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.07 0.64 6.34 -51.93 -0.33 0.31 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.09 1.26 6.16 -51.93 -0.32 0.94 16 38 H 0.40 2.12 7.63 -40.82 -0.31 1.81 16 39 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 40 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 41 H 0.10 1.84 7.02 -52.49 -0.37 1.47 16 42 H 0.11 2.52 8.06 -52.48 -0.42 2.10 16 43 H 0.28 7.61 8.31 -40.82 -0.34 7.27 16 44 H 0.13 3.11 5.62 -52.49 -0.29 2.81 16 45 H 0.11 1.72 8.06 -52.48 -0.42 1.30 16 LS Contribution 370.67 15.07 5.59 5.59 Total: -1.00 -35.03 370.67 -6.09 -41.12 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -5.88 Total: 3.28 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: -2.29 Total: -15.12 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: 1.31 Total: -38.00 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: 0.05 Total: -14.61 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -4.86 Total: 17.74 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.03 -6.09 -41.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000254968114.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.793 kcal (2) G-P(sol) polarization free energy of solvation -35.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds