Wall clock time and date at job start Tue Mar 31 2020 15:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47272 * 2 1 4 4 C 1.53007 * 109.47124 * 120.00245 * 2 1 3 5 5 C 1.53000 * 109.47295 * 54.99945 * 4 2 1 6 6 C 1.47199 * 109.46900 * 294.99868 * 4 2 1 7 7 N 3.43554 * 86.99935 * 79.49364 * 2 1 3 8 8 N 1.46505 * 109.47043 * 175.00041 * 4 2 1 9 9 C 1.34765 * 119.99982 * 180.02562 * 8 4 2 10 10 O 1.21727 * 120.00304 * 359.97438 * 9 8 4 11 11 C 1.46252 * 120.00137 * 179.97438 * 9 8 4 12 12 C 1.35023 * 120.00322 * 173.21039 * 11 9 8 13 13 C 1.46969 * 120.00158 * 348.68527 * 12 11 9 14 14 C 1.40023 * 120.09487 * 316.40212 * 13 12 11 15 15 C 1.37600 * 119.89371 * 179.69657 * 14 13 12 16 16 C 1.39171 * 120.10048 * 0.59668 * 15 14 13 17 17 O 1.35572 * 119.90014 * 179.69986 * 16 15 14 18 18 C 1.34783 * 117.00562 * 174.33973 * 17 16 15 19 19 H 1.08000 * 119.99249 * 5.05514 * 18 17 16 20 20 C 1.38709 * 120.00454 * 185.06198 * 18 17 16 21 21 N 1.31501 * 120.00476 * 179.97438 * 20 18 17 22 22 Si 1.86807 * 119.99961 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47208 * 90.00197 * 22 20 18 24 24 H 1.48500 * 109.47284 * 210.00152 * 22 20 18 25 25 H 1.48502 * 109.47040 * 330.00313 * 22 20 18 26 26 C 1.39176 * 120.20418 * 359.67425 * 16 15 14 27 27 C 1.37599 * 120.09973 * 0.02664 * 26 16 15 28 28 H 1.09000 * 109.47192 * 299.99635 * 1 2 3 29 29 H 1.08996 * 109.47333 * 59.99598 * 1 2 3 30 30 H 1.09006 * 109.47420 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47050 * 239.99843 * 2 1 3 32 32 H 1.09006 * 109.47371 * 60.00149 * 3 2 1 33 33 H 1.08996 * 109.47298 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47270 * 300.00441 * 3 2 1 35 35 H 1.09004 * 109.46885 * 300.00419 * 5 4 2 36 36 H 1.08997 * 109.46878 * 59.99702 * 5 4 2 37 37 H 1.09000 * 109.46911 * 180.02562 * 5 4 2 38 38 H 0.97006 * 119.99447 * 359.97438 * 8 4 2 39 39 H 1.07994 * 120.00135 * 353.20900 * 11 9 8 40 40 H 1.08001 * 120.00464 * 168.68312 * 12 11 9 41 41 H 1.08001 * 120.05187 * 359.97438 * 14 13 12 42 42 H 1.08006 * 119.94588 * 180.27520 * 15 14 13 43 43 H 0.97002 * 120.00382 * 179.97438 * 21 20 18 44 44 H 1.07998 * 119.94953 * 180.02562 * 26 16 15 45 45 H 1.08006 * 120.04749 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.4299 -2.1230 1.3137 6 6 1.6506 0.0389 2.4481 7 7 1.3501 0.6256 3.3733 8 7 3.5001 -0.8264 1.1906 9 6 4.1730 -1.4292 2.1906 10 8 3.5677 -1.8860 3.1428 11 6 5.6305 -1.5347 2.1317 12 6 6.3161 -2.0135 3.1918 13 6 5.6395 -2.1942 4.4839 14 6 4.7761 -1.2042 4.9688 15 6 4.1399 -1.3805 6.1761 16 6 4.3630 -2.5349 6.9207 17 8 3.7387 -2.7016 8.1125 18 6 3.9036 -3.8888 8.7290 19 1 4.5758 -4.6245 8.3127 20 6 3.2101 -4.1656 9.8979 21 7 3.3706 -5.3241 10.4991 22 14 2.0478 -2.8928 10.6181 23 1 0.6871 -3.0915 10.0574 24 1 2.0016 -3.0439 12.0947 25 1 2.5307 -1.5311 10.2747 26 6 5.2246 -3.5190 6.4453 27 6 5.8605 -3.3542 5.2362 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.1299 1.4424 0.0005 34 1 1.6766 1.9563 -0.8899 35 1 0.3436 -2.0447 1.3573 36 1 1.7182 -2.6858 0.4259 37 1 1.7929 -2.6366 2.2039 38 1 3.9823 -0.4628 0.4315 39 1 6.1584 -1.2296 1.2404 40 1 7.3619 -2.2637 3.0904 41 1 4.6064 -0.3057 4.3941 42 1 3.4703 -0.6194 6.5489 43 1 2.8859 -5.5175 11.3168 44 1 5.3945 -4.4135 7.0262 45 1 6.5287 -4.1186 4.8679 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000254968114.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:16 Heat of formation + Delta-G solvation = -4.490866 kcal Electronic energy + Delta-G solvation = -27747.423634 eV Core-core repulsion = 23923.968602 eV Total energy + Delta-G solvation = -3823.455032 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.58425 -40.82266 -39.30901 -38.07530 -36.60666 -34.69296 -34.35613 -34.08245 -31.90828 -31.32100 -29.75588 -28.04822 -27.32193 -25.70424 -24.20836 -23.63776 -22.77564 -22.22236 -20.43588 -19.74761 -19.20551 -18.60841 -18.18239 -16.74973 -16.63674 -16.29147 -16.06691 -15.77782 -15.69078 -15.59807 -15.29995 -14.91239 -14.66783 -14.52662 -14.34501 -14.27432 -14.12529 -13.98274 -13.83282 -13.72247 -13.40798 -13.16016 -13.08570 -12.85570 -12.73588 -12.66890 -12.54900 -12.31806 -12.04386 -11.97410 -11.77225 -11.74708 -11.37638 -11.04972 -10.63417 -10.46669 -10.29074 -9.66630 -8.63729 -8.56719 -6.26966 -0.05573 0.62661 1.04827 1.22197 1.28314 1.43445 1.48682 1.76565 2.21331 2.37227 2.46026 2.75117 2.92307 2.99994 3.18327 3.54013 3.80042 3.95980 4.01082 4.06227 4.09692 4.13750 4.38600 4.47775 4.55749 4.58619 4.69526 4.75161 4.77011 4.81302 4.89649 4.97586 4.99719 5.13406 5.16767 5.17974 5.26668 5.34169 5.36535 5.41571 5.45094 5.47097 5.64755 5.74179 5.79711 5.86465 6.21803 6.51820 6.68530 6.77917 7.40122 7.54634 8.54971 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014777 B = 0.003289 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.340319 B = 8511.277918 C = 9691.777154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.081 4.081 3 C -0.157 4.157 4 C 0.281 3.719 5 C -0.165 4.165 6 C 0.226 3.774 7 N -0.483 5.483 8 N -0.702 5.702 9 C 0.525 3.475 10 O -0.552 6.552 11 C -0.221 4.221 12 C 0.001 3.999 13 C -0.146 4.146 14 C 0.013 3.987 15 C -0.213 4.213 16 C 0.134 3.866 17 O -0.249 6.249 18 C -0.400 4.400 19 H 0.086 0.914 20 C 0.016 3.984 21 N -0.917 5.917 22 Si 0.963 3.037 23 H -0.270 1.270 24 H -0.257 1.257 25 H -0.271 1.271 26 C -0.249 4.249 27 C -0.048 4.048 28 H 0.028 0.972 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.141 0.859 32 H 0.024 0.976 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.109 0.891 37 H 0.048 0.952 38 H 0.428 0.572 39 H 0.184 0.816 40 H 0.172 0.828 41 H 0.112 0.888 42 H 0.098 0.902 43 H 0.286 0.714 44 H 0.112 0.888 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.690 10.697 -32.286 34.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.100 4.100 3 C -0.214 4.214 4 C 0.190 3.810 5 C -0.224 4.224 6 C -0.094 4.094 7 N -0.160 5.160 8 N -0.358 5.358 9 C 0.316 3.684 10 O -0.430 6.430 11 C -0.241 4.241 12 C -0.019 4.019 13 C -0.146 4.146 14 C -0.006 4.006 15 C -0.232 4.232 16 C 0.084 3.916 17 O -0.156 6.156 18 C -0.476 4.476 19 H 0.104 0.896 20 C -0.183 4.183 21 N -0.558 5.558 22 Si 0.786 3.214 23 H -0.195 1.195 24 H -0.181 1.181 25 H -0.196 1.196 26 C -0.268 4.268 27 C -0.066 4.066 28 H 0.047 0.953 29 H 0.107 0.893 30 H 0.094 0.906 31 H 0.158 0.842 32 H 0.043 0.957 33 H 0.094 0.906 34 H 0.106 0.894 35 H 0.098 0.902 36 H 0.128 0.872 37 H 0.067 0.933 38 H 0.268 0.732 39 H 0.201 0.799 40 H 0.189 0.811 41 H 0.130 0.870 42 H 0.116 0.884 43 H 0.096 0.904 44 H 0.130 0.870 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.621 11.277 -29.914 32.010 hybrid contribution -0.524 -0.013 0.873 1.018 sum 1.097 11.265 -29.041 31.168 Atomic orbital electron populations 1.22013 0.93718 1.03438 1.02299 1.21486 0.97121 0.96573 0.94833 1.21995 1.02336 0.94973 1.02135 1.18064 0.82122 0.93939 0.86866 1.22329 1.01779 0.93599 1.04696 1.30140 0.92574 0.92248 0.94395 1.81193 1.09583 1.12927 1.12264 1.45904 1.04887 1.59996 1.25050 1.19260 0.90103 0.77351 0.81684 1.91033 1.70881 1.47730 1.33392 1.23097 0.91055 1.07756 1.02239 1.22599 1.00221 0.90110 0.88931 1.18916 1.02690 0.95668 0.97362 1.20580 0.91209 0.97628 0.91156 1.20129 1.07350 0.97716 0.98045 1.19687 0.92022 0.94864 0.84987 1.83462 1.65913 1.36174 1.30044 1.20783 1.27735 0.91192 1.07935 0.89628 1.25186 0.98750 0.98572 0.95828 1.69681 1.43435 1.22787 1.19894 0.85341 0.78762 0.79128 0.78188 1.19499 1.18147 1.19593 1.21123 1.04175 1.00922 1.00551 1.21192 0.96859 0.96902 0.91596 0.95298 0.89340 0.90559 0.84156 0.95696 0.90645 0.89421 0.90228 0.87239 0.93295 0.73177 0.79875 0.81112 0.86983 0.88369 0.90396 0.87018 0.83293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 8.51 71.98 0.61 -0.80 16 2 C -0.08 -0.59 2.32 -10.79 -0.03 -0.62 16 3 C -0.16 -1.24 8.74 71.98 0.63 -0.61 16 4 C 0.28 4.47 0.51 1.80 0.00 4.47 16 5 C -0.17 -2.86 7.87 71.98 0.57 -2.29 16 6 C 0.23 6.17 10.22 89.44 0.91 7.08 16 7 N -0.48 -17.19 18.54 20.01 0.37 -16.82 16 8 N -0.70 -9.07 4.81 -435.54 -2.09 -11.16 16 9 C 0.53 11.29 6.18 86.33 0.53 11.82 16 10 O -0.55 -18.53 9.38 -4.43 -0.04 -18.57 16 11 C -0.22 -3.32 9.90 23.61 0.23 -3.09 16 12 C 0.00 0.01 9.80 23.82 0.23 0.24 16 13 C -0.15 -4.80 4.54 -20.13 -0.09 -4.89 16 14 C 0.01 0.49 6.59 22.55 0.15 0.64 16 15 C -0.21 -10.23 9.97 22.34 0.22 -10.01 16 16 C 0.13 7.16 6.66 22.72 0.15 7.32 16 17 O -0.25 -15.11 8.57 -20.30 -0.17 -15.28 16 18 C -0.40 -25.33 9.94 67.93 0.68 -24.65 16 19 H 0.09 5.58 5.41 -2.91 -0.02 5.56 16 20 C 0.02 0.96 5.49 84.85 0.47 1.42 16 21 N -0.92 -57.03 13.96 21.62 0.30 -56.73 16 22 Si 0.96 49.25 28.62 68.60 1.96 51.21 16 23 H -0.27 -13.47 7.11 99.48 0.71 -12.77 16 24 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 25 H -0.27 -14.21 7.11 99.48 0.71 -13.50 16 26 C -0.25 -11.94 9.14 22.34 0.20 -11.74 16 27 C -0.05 -1.75 9.78 22.55 0.22 -1.53 16 28 H 0.03 0.43 7.38 -2.39 -0.02 0.41 16 29 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.08 0.59 6.34 -2.38 -0.02 0.57 16 31 H 0.14 -0.02 8.14 -2.39 -0.02 -0.04 16 32 H 0.02 0.37 7.09 -2.38 -0.02 0.35 16 33 H 0.07 0.37 7.18 -2.39 -0.02 0.35 16 34 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 35 H 0.08 1.26 6.34 -2.39 -0.02 1.25 16 36 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.05 1.32 6.16 -2.39 -0.01 1.31 16 38 H 0.43 1.53 7.63 -92.70 -0.71 0.82 16 39 H 0.18 0.75 8.06 -2.91 -0.02 0.73 16 40 H 0.17 2.00 8.06 -2.91 -0.02 1.97 16 41 H 0.11 4.03 7.02 -2.91 -0.02 4.01 16 42 H 0.10 4.82 8.06 -2.91 -0.02 4.80 16 43 H 0.29 16.26 8.31 -92.71 -0.77 15.49 16 44 H 0.11 5.74 5.62 -2.91 -0.02 5.73 16 45 H 0.15 4.26 8.06 -2.91 -0.02 4.24 16 Total: -1.00 -89.02 370.67 6.35 -82.68 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: 0.32 Total: 11.90 kcal Atomic # 6 Polarization: -32.92 SS G_CDS: 5.70 Total: -27.22 kcal Atomic # 7 Polarization: -83.30 SS G_CDS: -1.42 Total: -84.72 kcal Atomic # 8 Polarization: -33.63 SS G_CDS: -0.22 Total: -33.85 kcal Atomic # 14 Polarization: 49.25 SS G_CDS: 1.96 Total: 51.21 kcal Total: -89.02 6.35 -82.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000254968114.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.188 kcal (2) G-P(sol) polarization free energy of solvation -89.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds