Wall clock time and date at job start Tue Mar 31 2020 15:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47255 * 2 1 4 4 C 1.53006 * 109.46938 * 119.99974 * 2 1 3 5 5 C 1.53002 * 109.46920 * 185.00026 * 4 2 1 6 6 C 1.47200 * 109.46726 * 304.99925 * 4 2 1 7 7 N 3.43556 * 81.12631 * 83.60163 * 2 1 3 8 8 N 1.46493 * 109.47091 * 64.99709 * 4 2 1 9 9 C 1.34781 * 119.99956 * 179.97438 * 8 4 2 10 10 O 1.21718 * 119.99840 * 0.02562 * 9 8 4 11 11 C 1.46249 * 120.00058 * 180.02562 * 9 8 4 12 12 C 1.35026 * 120.00261 * 173.07198 * 11 9 8 13 13 C 1.46964 * 119.99375 * 348.87025 * 12 11 9 14 14 C 1.40023 * 120.10148 * 311.80869 * 13 12 11 15 15 C 1.37601 * 119.89462 * 179.69520 * 14 13 12 16 16 C 1.39177 * 120.10365 * 0.61144 * 15 14 13 17 17 O 1.35570 * 119.89876 * 179.69271 * 16 15 14 18 18 C 1.34783 * 116.99399 * 185.61364 * 17 16 15 19 19 H 1.07990 * 120.00769 * 354.90482 * 18 17 16 20 20 C 1.38727 * 119.99516 * 174.90595 * 18 17 16 21 21 N 1.31512 * 119.99964 * 0.02562 * 20 18 17 22 22 Si 1.86791 * 119.99918 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47313 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47077 * 120.00192 * 22 20 18 25 25 H 1.48501 * 109.47314 * 239.99974 * 22 20 18 26 26 C 1.39175 * 120.19846 * 359.66491 * 16 15 14 27 27 C 1.37600 * 120.10492 * 0.02775 * 26 16 15 28 28 H 1.08995 * 109.47195 * 300.00454 * 1 2 3 29 29 H 1.08999 * 109.47262 * 60.00363 * 1 2 3 30 30 H 1.09001 * 109.47063 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46846 * 239.99551 * 2 1 3 32 32 H 1.08996 * 109.46793 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.46689 * 299.99988 * 3 2 1 34 34 H 1.08996 * 109.46908 * 59.99881 * 3 2 1 35 35 H 1.08998 * 109.46751 * 299.99963 * 5 4 2 36 36 H 1.08995 * 109.46934 * 59.99736 * 5 4 2 37 37 H 1.08996 * 109.46829 * 179.97438 * 5 4 2 38 38 H 0.97001 * 120.00318 * 0.02562 * 8 4 2 39 39 H 1.08003 * 120.00485 * 353.06859 * 11 9 8 40 40 H 1.08000 * 120.00278 * 168.59167 * 12 11 9 41 41 H 1.08000 * 120.05090 * 0.02562 * 14 13 12 42 42 H 1.08002 * 119.94562 * 180.27461 * 15 14 13 43 43 H 0.96993 * 119.99942 * 180.02562 * 21 20 18 44 44 H 1.08005 * 119.94517 * 180.02562 * 26 16 15 45 45 H 1.08006 * 120.05097 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5649 -0.6133 1.3138 6 6 1.4530 -0.1006 2.4481 7 7 1.0001 0.3783 3.3733 8 7 1.6524 -2.1328 1.1907 9 6 1.9963 -2.9682 2.1908 10 8 2.6287 -2.5497 3.1430 11 6 1.6099 -4.3775 2.1320 12 6 2.0711 -5.2434 3.0598 13 6 3.1447 -4.8349 3.9765 14 6 4.2958 -4.2133 3.4773 15 6 5.2956 -3.8270 4.3401 16 6 5.1697 -4.0646 5.7057 17 8 6.1601 -3.6878 6.5513 18 6 6.0316 -4.0489 7.8435 19 1 5.1308 -4.5405 8.1799 20 6 7.0566 -3.7891 8.7415 21 7 8.1534 -3.1900 8.3320 22 14 6.8789 -4.2902 10.5321 23 1 5.5607 -4.9432 10.7350 24 1 7.9620 -5.2411 10.8899 25 1 6.9730 -3.0853 11.3951 26 6 4.0299 -4.6873 6.2057 27 6 3.0222 -5.0715 5.3511 28 1 -0.3633 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 3.9994 -1.0728 0.4260 36 1 3.8532 0.4369 1.3573 37 1 3.9281 -1.1267 2.2040 38 1 1.1488 -2.4664 0.4317 39 1 0.9554 -4.7257 1.3466 40 1 1.6481 -6.2345 3.1310 41 1 4.3964 -4.0326 2.4173 42 1 6.1819 -3.3435 3.9565 43 1 8.8702 -3.0087 8.9597 44 1 3.9363 -4.8693 7.2662 45 1 2.1378 -5.5543 5.7401 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000254968119.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:21 Heat of formation + Delta-G solvation = 15.224125 kcal Electronic energy + Delta-G solvation = -27589.923800 eV Core-core repulsion = 23767.323674 eV Total energy + Delta-G solvation = -3822.600125 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.51788 -38.98642 -38.03460 -36.37214 -35.48588 -33.45331 -33.11264 -32.13414 -30.45432 -30.13062 -28.17346 -27.31367 -25.47575 -24.78670 -22.98270 -21.96682 -21.74622 -20.96793 -19.26824 -17.98476 -17.67820 -17.31014 -16.62461 -15.83068 -15.15690 -14.95675 -14.57582 -14.53191 -14.40061 -14.05279 -13.76539 -13.56948 -13.52857 -13.42189 -13.09347 -12.97073 -12.72043 -12.63872 -12.56792 -12.35311 -12.21518 -12.06132 -11.84967 -11.70427 -11.49450 -11.32096 -11.21243 -11.09351 -10.98259 -10.70539 -10.60505 -10.40974 -9.49028 -9.40007 -9.33111 -9.17118 -8.71655 -7.98568 -6.89240 -6.45311 -4.00969 1.22104 2.40423 2.49783 2.62848 2.83052 3.14341 3.14910 3.20714 3.40840 3.45154 3.84941 3.97936 4.21986 4.46968 4.60883 4.67613 4.90819 5.05817 5.12883 5.15679 5.18031 5.25903 5.32892 5.41565 5.45132 5.50123 5.55989 5.58065 5.64949 5.73048 5.82767 5.83393 5.86137 6.20763 6.23079 6.30186 6.33588 6.41147 6.56117 6.77315 7.02233 7.12420 7.33767 7.42649 7.49606 7.50356 7.62087 7.91424 8.01509 8.40482 9.00629 9.72419 10.72657 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016916 B = 0.002911 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.881164 B = 9615.702695 C =10405.881955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.092 4.092 3 C -0.154 4.154 4 C 0.285 3.715 5 C -0.169 4.169 6 C 0.209 3.791 7 N -0.418 5.418 8 N -0.728 5.728 9 C 0.540 3.460 10 O -0.496 6.496 11 C -0.264 4.264 12 C 0.031 3.969 13 C -0.184 4.184 14 C -0.001 4.001 15 C -0.198 4.198 16 C 0.169 3.831 17 O -0.173 6.173 18 C -0.389 4.389 19 H 0.094 0.906 20 C 0.039 3.961 21 N -0.860 5.860 22 Si 0.941 3.059 23 H -0.266 1.266 24 H -0.275 1.275 25 H -0.276 1.276 26 C -0.246 4.246 27 C -0.043 4.043 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.098 0.902 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.057 0.943 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.093 0.907 38 H 0.403 0.597 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.103 0.897 42 H 0.114 0.886 43 H 0.270 0.730 44 H 0.125 0.875 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.495 1.140 -20.745 24.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.112 4.112 3 C -0.211 4.211 4 C 0.195 3.805 5 C -0.228 4.228 6 C -0.111 4.111 7 N -0.094 5.094 8 N -0.384 5.384 9 C 0.330 3.670 10 O -0.370 6.370 11 C -0.285 4.285 12 C 0.011 3.989 13 C -0.185 4.185 14 C -0.019 4.019 15 C -0.217 4.217 16 C 0.115 3.885 17 O -0.075 6.075 18 C -0.466 4.466 19 H 0.111 0.889 20 C -0.166 4.166 21 N -0.494 5.494 22 Si 0.766 3.234 23 H -0.190 1.190 24 H -0.201 1.201 25 H -0.201 1.201 26 C -0.265 4.265 27 C -0.061 4.061 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.116 0.884 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.112 0.888 38 H 0.239 0.761 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.121 0.879 42 H 0.132 0.868 43 H 0.080 0.920 44 H 0.143 0.857 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -13.264 2.370 -18.539 22.918 hybrid contribution -0.386 -0.591 0.233 0.744 sum -13.650 1.778 -18.307 22.905 Atomic orbital electron populations 1.21954 0.94260 1.02436 1.02624 1.21406 0.96695 0.97314 0.95779 1.21959 1.02170 0.94406 1.02594 1.17621 0.95043 0.80954 0.86924 1.22359 0.91190 1.03777 1.05425 1.29161 0.93514 0.94000 0.94412 1.81151 1.09159 1.09021 1.10050 1.46131 1.60167 1.07144 1.24952 1.18603 0.79248 0.87073 0.82085 1.91014 1.37081 1.77307 1.31638 1.22565 1.08938 0.92452 1.04521 1.22369 0.89855 0.96892 0.89747 1.18280 0.96249 1.10926 0.93064 1.20413 0.91655 0.92543 0.97332 1.20001 1.01422 1.09675 0.90651 1.19529 0.88102 0.90613 0.90288 1.83906 1.39453 1.65186 1.18999 1.21437 1.03980 1.39813 0.81325 0.88876 1.25322 0.94473 0.96555 1.00216 1.70030 1.05640 1.38097 1.35654 0.85637 0.78756 0.78509 0.80488 1.19041 1.20087 1.20113 1.20966 0.95922 1.09314 1.00330 1.20718 0.96702 0.96610 0.92107 0.92490 0.91540 0.92090 0.88368 0.91147 0.91514 0.92440 0.90509 0.90779 0.88829 0.76109 0.85924 0.85960 0.87942 0.86803 0.92012 0.85693 0.87703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.95 8.74 37.16 0.32 -0.63 16 2 C -0.09 -0.57 2.32 -90.61 -0.21 -0.78 16 3 C -0.15 -0.97 8.51 37.16 0.32 -0.65 16 4 C 0.28 2.82 0.51 -134.61 -0.07 2.76 16 5 C -0.17 -1.76 7.87 37.16 0.29 -1.47 16 6 C 0.21 2.99 10.22 -20.76 -0.21 2.78 16 7 N -0.42 -7.30 18.54 42.15 0.78 -6.52 16 8 N -0.73 -6.82 4.81 -51.66 -0.25 -7.07 16 9 C 0.54 7.22 6.35 -13.04 -0.08 7.14 16 10 O -0.50 -9.03 9.69 5.17 0.05 -8.98 16 11 C -0.26 -3.01 9.92 -37.51 -0.37 -3.38 16 12 C 0.03 0.41 9.77 -37.19 -0.36 0.05 16 13 C -0.18 -3.30 4.34 -105.03 -0.46 -3.76 16 14 C 0.00 -0.02 6.78 -39.15 -0.27 -0.28 16 15 C -0.20 -4.44 9.97 -39.47 -0.39 -4.83 16 16 C 0.17 4.31 6.66 -38.89 -0.26 4.05 16 17 O -0.17 -5.11 9.74 0.74 0.01 -5.10 16 18 C -0.39 -11.20 9.48 30.91 0.29 -10.91 16 19 H 0.09 2.50 5.18 -52.49 -0.27 2.23 16 20 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 21 N -0.86 -25.64 13.67 55.48 0.76 -24.88 16 22 Si 0.94 21.01 29.55 -169.99 -5.02 15.98 16 23 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 24 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 25 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 26 C -0.25 -5.67 9.14 -39.47 -0.36 -6.03 16 27 C -0.04 -0.84 9.78 -39.15 -0.38 -1.22 16 28 H 0.06 0.48 7.09 -51.93 -0.37 0.12 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.32 7.18 -51.93 -0.37 -0.06 16 31 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.41 6.35 -51.93 -0.33 0.08 16 33 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.47 7.38 -51.93 -0.38 0.08 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.69 6.34 -51.93 -0.33 0.36 16 37 H 0.09 1.36 6.16 -51.93 -0.32 1.04 16 38 H 0.40 2.30 7.63 -40.82 -0.31 1.98 16 39 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 40 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 41 H 0.10 1.69 7.46 -52.49 -0.39 1.30 16 42 H 0.11 2.47 8.06 -52.49 -0.42 2.05 16 43 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 44 H 0.13 2.88 5.62 -52.48 -0.29 2.59 16 45 H 0.10 1.74 8.06 -52.48 -0.42 1.31 16 LS Contribution 372.69 15.07 5.62 5.62 Total: -1.00 -36.05 372.69 -6.24 -42.30 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -5.89 Total: 4.84 kcal Atomic # 6 Polarization: -13.88 SS G_CDS: -2.30 Total: -16.17 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: 1.29 Total: -38.47 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: 0.06 Total: -14.09 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.05 -6.24 -42.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000254968119.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.519 kcal (2) G-P(sol) polarization free energy of solvation -36.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds