Wall clock time and date at job start Tue Mar 31 2020 15:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47255 * 2 1 4 4 C 1.53006 * 109.46938 * 119.99974 * 2 1 3 5 5 C 1.53002 * 109.46920 * 185.00026 * 4 2 1 6 6 C 1.47200 * 109.46726 * 304.99925 * 4 2 1 7 7 N 3.43556 * 81.12631 * 83.60163 * 2 1 3 8 8 N 1.46493 * 109.47091 * 64.99709 * 4 2 1 9 9 C 1.34781 * 119.99956 * 179.97438 * 8 4 2 10 10 O 1.21718 * 119.99840 * 0.02562 * 9 8 4 11 11 C 1.46249 * 120.00058 * 180.02562 * 9 8 4 12 12 C 1.35026 * 120.00261 * 173.07198 * 11 9 8 13 13 C 1.46964 * 119.99375 * 348.87025 * 12 11 9 14 14 C 1.40023 * 120.10148 * 311.80869 * 13 12 11 15 15 C 1.37601 * 119.89462 * 179.69520 * 14 13 12 16 16 C 1.39177 * 120.10365 * 0.61144 * 15 14 13 17 17 O 1.35570 * 119.89876 * 179.69271 * 16 15 14 18 18 C 1.34783 * 116.99399 * 185.61364 * 17 16 15 19 19 H 1.07990 * 120.00769 * 354.90482 * 18 17 16 20 20 C 1.38727 * 119.99516 * 174.90595 * 18 17 16 21 21 N 1.31512 * 119.99964 * 0.02562 * 20 18 17 22 22 Si 1.86791 * 119.99918 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47313 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47077 * 120.00192 * 22 20 18 25 25 H 1.48501 * 109.47314 * 239.99974 * 22 20 18 26 26 C 1.39175 * 120.19846 * 359.66491 * 16 15 14 27 27 C 1.37600 * 120.10492 * 0.02775 * 26 16 15 28 28 H 1.08995 * 109.47195 * 300.00454 * 1 2 3 29 29 H 1.08999 * 109.47262 * 60.00363 * 1 2 3 30 30 H 1.09001 * 109.47063 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46846 * 239.99551 * 2 1 3 32 32 H 1.08996 * 109.46793 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.46689 * 299.99988 * 3 2 1 34 34 H 1.08996 * 109.46908 * 59.99881 * 3 2 1 35 35 H 1.08998 * 109.46751 * 299.99963 * 5 4 2 36 36 H 1.08995 * 109.46934 * 59.99736 * 5 4 2 37 37 H 1.08996 * 109.46829 * 179.97438 * 5 4 2 38 38 H 0.97001 * 120.00318 * 0.02562 * 8 4 2 39 39 H 1.08003 * 120.00485 * 353.06859 * 11 9 8 40 40 H 1.08000 * 120.00278 * 168.59167 * 12 11 9 41 41 H 1.08000 * 120.05090 * 0.02562 * 14 13 12 42 42 H 1.08002 * 119.94562 * 180.27461 * 15 14 13 43 43 H 0.96993 * 119.99942 * 180.02562 * 21 20 18 44 44 H 1.08005 * 119.94517 * 180.02562 * 26 16 15 45 45 H 1.08006 * 120.05097 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5649 -0.6133 1.3138 6 6 1.4530 -0.1006 2.4481 7 7 1.0001 0.3783 3.3733 8 7 1.6524 -2.1328 1.1907 9 6 1.9963 -2.9682 2.1908 10 8 2.6287 -2.5497 3.1430 11 6 1.6099 -4.3775 2.1320 12 6 2.0711 -5.2434 3.0598 13 6 3.1447 -4.8349 3.9765 14 6 4.2958 -4.2133 3.4773 15 6 5.2956 -3.8270 4.3401 16 6 5.1697 -4.0646 5.7057 17 8 6.1601 -3.6878 6.5513 18 6 6.0316 -4.0489 7.8435 19 1 5.1308 -4.5405 8.1799 20 6 7.0566 -3.7891 8.7415 21 7 8.1534 -3.1900 8.3320 22 14 6.8789 -4.2902 10.5321 23 1 5.5607 -4.9432 10.7350 24 1 7.9620 -5.2411 10.8899 25 1 6.9730 -3.0853 11.3951 26 6 4.0299 -4.6873 6.2057 27 6 3.0222 -5.0715 5.3511 28 1 -0.3633 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 3.9994 -1.0728 0.4260 36 1 3.8532 0.4369 1.3573 37 1 3.9281 -1.1267 2.2040 38 1 1.1488 -2.4664 0.4317 39 1 0.9554 -4.7257 1.3466 40 1 1.6481 -6.2345 3.1310 41 1 4.3964 -4.0326 2.4173 42 1 6.1819 -3.3435 3.9565 43 1 8.8702 -3.0087 8.9597 44 1 3.9363 -4.8693 7.2662 45 1 2.1378 -5.5543 5.7401 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000254968119.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:20 Heat of formation + Delta-G solvation = -10.138104 kcal Electronic energy + Delta-G solvation = -27591.023588 eV Core-core repulsion = 23767.323674 eV Total energy + Delta-G solvation = -3823.699914 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.53193 -40.66219 -39.22255 -37.97732 -36.61851 -34.61295 -34.33318 -33.89619 -31.81560 -31.31062 -29.55101 -28.01759 -27.40384 -25.72969 -24.21237 -23.50141 -22.77534 -22.24712 -20.40778 -19.78054 -18.94695 -18.57423 -18.09251 -16.66111 -16.42285 -16.34973 -16.05582 -15.85982 -15.63658 -15.51714 -15.03537 -14.97075 -14.71669 -14.50905 -14.38005 -14.17170 -13.99857 -13.80834 -13.73449 -13.59983 -13.38610 -13.09217 -13.01458 -12.85402 -12.69006 -12.63514 -12.37097 -12.21714 -12.13109 -11.99408 -11.76811 -11.75057 -11.22994 -10.94358 -10.56285 -10.41631 -10.23438 -9.63284 -8.57613 -8.50354 -6.17310 0.04913 0.71427 1.08009 1.30798 1.41464 1.46427 1.49833 1.73927 2.14973 2.40100 2.45192 2.84475 2.91675 3.22178 3.51349 3.54277 3.80756 3.99309 4.07395 4.11719 4.15280 4.17894 4.39343 4.54896 4.57355 4.63280 4.70087 4.77420 4.78001 4.82002 4.97961 5.00142 5.06245 5.09495 5.14161 5.26016 5.27615 5.28387 5.35101 5.43363 5.47488 5.49189 5.68433 5.73096 5.83543 6.01548 6.26290 6.49633 6.70019 6.93867 7.42452 7.76758 8.73089 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016916 B = 0.002911 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.881164 B = 9615.702695 C =10405.881955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.081 4.081 3 C -0.157 4.157 4 C 0.282 3.718 5 C -0.168 4.168 6 C 0.229 3.771 7 N -0.487 5.487 8 N -0.703 5.703 9 C 0.525 3.475 10 O -0.552 6.552 11 C -0.221 4.221 12 C 0.002 3.998 13 C -0.150 4.150 14 C 0.005 3.995 15 C -0.213 4.213 16 C 0.122 3.878 17 O -0.232 6.232 18 C -0.415 4.415 19 H 0.099 0.901 20 C -0.024 4.024 21 N -0.920 5.920 22 Si 1.020 2.980 23 H -0.253 1.253 24 H -0.263 1.263 25 H -0.269 1.269 26 C -0.258 4.258 27 C -0.056 4.056 28 H 0.024 0.976 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.140 0.860 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.028 0.972 35 H 0.109 0.891 36 H 0.078 0.922 37 H 0.048 0.952 38 H 0.427 0.573 39 H 0.182 0.818 40 H 0.168 0.832 41 H 0.132 0.868 42 H 0.105 0.895 43 H 0.273 0.727 44 H 0.113 0.887 45 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.100 -0.781 -25.031 30.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.100 4.100 3 C -0.215 4.215 4 C 0.191 3.809 5 C -0.227 4.227 6 C -0.090 4.090 7 N -0.164 5.164 8 N -0.359 5.359 9 C 0.316 3.684 10 O -0.430 6.430 11 C -0.242 4.242 12 C -0.017 4.017 13 C -0.151 4.151 14 C -0.013 4.013 15 C -0.233 4.233 16 C 0.072 3.928 17 O -0.139 6.139 18 C -0.491 4.491 19 H 0.116 0.884 20 C -0.221 4.221 21 N -0.558 5.558 22 Si 0.839 3.161 23 H -0.176 1.176 24 H -0.188 1.188 25 H -0.194 1.194 26 C -0.278 4.278 27 C -0.074 4.074 28 H 0.043 0.957 29 H 0.106 0.894 30 H 0.094 0.906 31 H 0.158 0.842 32 H 0.093 0.907 33 H 0.107 0.893 34 H 0.047 0.953 35 H 0.128 0.872 36 H 0.097 0.903 37 H 0.068 0.932 38 H 0.268 0.732 39 H 0.199 0.801 40 H 0.185 0.815 41 H 0.150 0.850 42 H 0.123 0.877 43 H 0.082 0.918 44 H 0.131 0.869 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -16.951 0.430 -22.930 28.519 hybrid contribution 0.385 0.059 1.057 1.126 sum -16.566 0.489 -21.873 27.443 Atomic orbital electron populations 1.21992 0.93953 1.03259 1.02157 1.21493 0.96809 0.96947 0.94791 1.22013 1.02539 0.94602 1.02330 1.18057 0.94599 0.81387 0.86857 1.22351 0.91555 1.03977 1.04781 1.30161 0.91910 0.92575 0.94379 1.81150 1.11619 1.11279 1.12368 1.45897 1.59011 1.06376 1.24664 1.19248 0.78630 0.88552 0.81965 1.91046 1.39535 1.78413 1.34021 1.23085 1.07019 0.90438 1.03625 1.22577 0.89859 0.99741 0.89568 1.18897 0.96675 1.06178 0.93355 1.20731 0.90921 0.91469 0.98167 1.20234 1.02479 1.10278 0.90281 1.20052 0.88722 0.92909 0.91162 1.83869 1.41835 1.68511 1.19668 1.21877 1.04720 1.40559 0.81921 0.88377 1.26638 0.93777 0.96342 1.05340 1.70173 1.07023 1.40970 1.37645 0.84519 0.79481 0.78469 0.73633 1.17641 1.18757 1.19370 1.21073 0.96460 1.09699 1.00527 1.21138 0.96844 0.96700 0.92707 0.95672 0.89354 0.90619 0.84182 0.90683 0.89264 0.95251 0.87211 0.90292 0.93239 0.73194 0.80101 0.81495 0.84975 0.87728 0.91752 0.86890 0.84167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 8.74 71.98 0.63 -0.67 16 2 C -0.08 -0.66 2.32 -10.79 -0.03 -0.69 16 3 C -0.16 -1.56 8.51 71.98 0.61 -0.95 16 4 C 0.28 4.81 0.51 1.80 0.00 4.81 16 5 C -0.17 -3.21 7.87 71.98 0.57 -2.65 16 6 C 0.23 6.48 10.22 89.44 0.91 7.39 16 7 N -0.49 -17.65 18.54 20.01 0.37 -17.28 16 8 N -0.70 -9.83 4.81 -435.56 -2.09 -11.92 16 9 C 0.53 11.91 6.35 86.32 0.55 12.46 16 10 O -0.55 -19.36 9.69 -4.41 -0.04 -19.40 16 11 C -0.22 -3.55 9.92 23.61 0.23 -3.32 16 12 C 0.00 0.04 9.77 23.82 0.23 0.27 16 13 C -0.15 -5.02 4.34 -20.13 -0.09 -5.11 16 14 C 0.01 0.19 6.78 22.55 0.15 0.35 16 15 C -0.21 -10.14 9.97 22.34 0.22 -9.92 16 16 C 0.12 6.71 6.66 22.72 0.15 6.86 16 17 O -0.23 -15.09 9.74 -20.28 -0.20 -15.29 16 18 C -0.41 -25.84 9.48 67.94 0.64 -25.20 16 19 H 0.10 5.70 5.18 -2.92 -0.02 5.68 16 20 C -0.02 -1.42 5.49 84.86 0.47 -0.95 16 21 N -0.92 -59.02 13.67 21.63 0.30 -58.72 16 22 Si 1.02 45.30 29.55 68.60 2.03 47.33 16 23 H -0.25 -10.48 7.11 99.48 0.71 -9.77 16 24 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 25 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 26 C -0.26 -12.53 9.14 22.34 0.20 -12.32 16 27 C -0.06 -2.13 9.78 22.55 0.22 -1.91 16 28 H 0.02 0.38 7.09 -2.39 -0.02 0.36 16 29 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.07 0.39 7.18 -2.39 -0.02 0.38 16 31 H 0.14 0.12 8.14 -2.39 -0.02 0.10 16 32 H 0.07 0.68 6.35 -2.39 -0.02 0.66 16 33 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.03 0.46 7.38 -2.39 -0.02 0.44 16 35 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.08 1.41 6.34 -2.39 -0.02 1.39 16 37 H 0.05 1.44 6.16 -2.39 -0.01 1.43 16 38 H 0.43 1.92 7.63 -92.71 -0.71 1.21 16 39 H 0.18 0.96 8.06 -2.91 -0.02 0.94 16 40 H 0.17 2.16 8.06 -2.91 -0.02 2.14 16 41 H 0.13 4.05 7.46 -2.91 -0.02 4.03 16 42 H 0.10 4.97 8.06 -2.91 -0.02 4.95 16 43 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 44 H 0.11 5.59 5.62 -2.91 -0.02 5.58 16 45 H 0.14 4.28 8.06 -2.91 -0.02 4.26 16 Total: -1.00 -93.13 372.69 6.37 -86.76 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: 0.32 Total: 20.08 kcal Atomic # 6 Polarization: -37.24 SS G_CDS: 5.69 Total: -31.55 kcal Atomic # 7 Polarization: -86.49 SS G_CDS: -1.43 Total: -87.92 kcal Atomic # 8 Polarization: -34.45 SS G_CDS: -0.24 Total: -34.69 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -93.13 6.37 -86.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000254968119.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.622 kcal (2) G-P(sol) polarization free energy of solvation -93.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds