Wall clock time and date at job start Tue Mar 31 2020 15:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47323 * 2 1 4 4 C 1.53003 * 109.47334 * 120.00358 * 2 1 3 5 5 C 1.52995 * 109.47158 * 64.99642 * 4 2 1 6 6 C 1.50705 * 109.47115 * 180.02562 * 5 4 2 7 7 N 1.30105 * 126.13928 * 270.04044 * 6 5 4 8 8 O 1.21280 * 110.59006 * 179.97438 * 7 6 5 9 9 C 1.34432 * 109.64224 * 359.97438 * 8 7 6 10 10 C 1.46384 * 126.73301 * 179.97438 * 9 8 7 11 11 C 1.34894 * 119.99677 * 0.03606 * 10 9 8 12 12 C 1.47034 * 119.99960 * 179.97438 * 11 10 9 13 13 C 1.39989 * 120.09661 * 359.71800 * 12 11 10 14 14 C 1.37630 * 119.89439 * 179.69743 * 13 12 11 15 15 C 1.39146 * 120.10465 * 0.60348 * 14 13 12 16 16 O 1.35601 * 119.90413 * 179.69540 * 15 14 13 17 17 C 1.34793 * 117.00008 * 174.41987 * 16 15 14 18 18 H 1.08005 * 120.00009 * 5.06498 * 17 16 15 19 19 C 1.38679 * 119.99984 * 185.05172 * 17 16 15 20 20 N 1.31535 * 120.00069 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00006 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47075 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46899 * 120.00601 * 21 19 17 24 24 H 1.48504 * 109.46963 * 240.00256 * 21 19 17 25 25 C 1.39155 * 120.19615 * 359.67117 * 15 14 13 26 26 C 1.37628 * 120.10268 * 0.02576 * 25 15 14 27 27 N 1.32616 * 106.53566 * 0.02562 * 9 8 7 28 28 H 1.09004 * 109.47215 * 59.99721 * 1 2 3 29 29 H 1.09001 * 109.47364 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46984 * 299.99858 * 1 2 3 31 31 H 1.09004 * 109.46984 * 240.00142 * 2 1 3 32 32 H 1.08998 * 109.47048 * 180.02562 * 3 2 1 33 33 H 1.08994 * 109.46685 * 300.00192 * 3 2 1 34 34 H 1.08999 * 109.46551 * 60.00002 * 3 2 1 35 35 H 1.09005 * 109.46736 * 304.99540 * 4 2 1 36 36 H 1.09002 * 109.47268 * 184.99597 * 4 2 1 37 37 H 1.09005 * 109.47381 * 60.00292 * 5 4 2 38 38 H 1.09007 * 109.47433 * 300.00282 * 5 4 2 39 39 H 1.07996 * 120.00141 * 180.02562 * 10 9 8 40 40 H 1.08006 * 120.00111 * 359.97438 * 11 10 9 41 41 H 1.07994 * 120.04852 * 359.97438 * 13 12 11 42 42 H 1.07999 * 119.94788 * 180.29989 * 14 13 12 43 43 H 0.96994 * 120.00377 * 179.97438 * 20 19 17 44 44 H 1.08000 * 119.95159 * 180.02562 * 25 15 14 45 45 H 1.07992 * 120.05709 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6352 -2.1955 1.1879 6 6 2.1371 -2.9058 2.4186 7 7 3.2909 -3.4928 2.5489 8 8 3.4022 -3.9734 3.6569 9 6 2.2882 -3.7303 4.3689 10 6 2.0238 -4.1417 5.7487 11 6 2.9528 -4.8393 6.4342 12 6 2.6876 -5.2521 7.8202 13 6 1.4740 -4.9172 8.4324 14 6 1.2276 -5.3112 9.7279 15 6 2.1874 -6.0304 10.4333 16 8 1.9428 -6.4111 11.7116 17 6 2.8611 -7.2025 12.3008 18 1 3.7811 -7.4379 11.7861 19 6 2.6249 -7.7143 13.5678 20 7 1.5044 -7.4278 14.1945 21 14 3.8979 -8.8105 14.3847 22 1 5.0617 -8.9782 13.4777 23 1 4.3467 -8.1861 15.6551 24 1 3.2973 -10.1382 14.6708 25 6 3.3975 -6.3605 9.8307 26 6 3.6502 -5.9762 8.5335 27 7 1.4752 -3.0456 3.5759 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6054 -0.2618 2.1370 36 1 3.1263 -0.6445 1.2951 37 1 2.0698 -2.6551 0.3001 38 1 0.5488 -2.2724 1.1420 39 1 1.0851 -3.8867 6.2178 40 1 3.8915 -5.0946 5.9649 41 1 0.7306 -4.3545 7.8874 42 1 0.2896 -5.0574 10.1994 43 1 1.3390 -7.7860 15.0805 44 1 4.1395 -6.9192 10.3817 45 1 4.5893 -6.2332 8.0665 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264645364.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:22 Heat of formation + Delta-G solvation = 54.365111 kcal Electronic energy + Delta-G solvation = -25253.379015 eV Core-core repulsion = 21432.476170 eV Total energy + Delta-G solvation = -3820.902845 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -45.34299 -39.27710 -37.64220 -37.14266 -35.67883 -34.51539 -32.65761 -31.98855 -30.49695 -30.42105 -28.14880 -27.53820 -25.77760 -25.19343 -24.00841 -22.94180 -22.15166 -21.15656 -20.36812 -19.47696 -18.23552 -17.94373 -17.33655 -16.99774 -16.16094 -15.61242 -15.15977 -14.86999 -14.54919 -14.51256 -14.35807 -13.90451 -13.79378 -13.37784 -13.25563 -13.08607 -12.78687 -12.67502 -12.47597 -12.34831 -12.12525 -11.95571 -11.80885 -11.73176 -11.65113 -11.32007 -11.16559 -11.12965 -11.05833 -10.97825 -10.85092 -10.71366 -10.57634 -10.46938 -9.57021 -9.34539 -8.82573 -8.44876 -7.15226 -6.71505 -4.25477 0.50262 1.67492 2.07804 2.27975 2.91534 2.94642 3.00809 3.06988 3.09901 3.59606 3.77051 4.01507 4.42778 4.47287 4.49651 4.54602 4.81850 4.86871 4.98147 5.06864 5.07533 5.11172 5.22218 5.27352 5.30024 5.44458 5.47063 5.52750 5.55110 5.58477 5.66110 5.66812 5.79811 5.83228 5.90221 5.96275 5.99907 6.02176 6.09240 6.35359 6.37157 6.50565 6.70187 6.84663 7.04849 7.14712 7.20422 7.56624 7.73736 8.23039 8.73028 9.39145 10.44782 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.037371 B = 0.001567 C = 0.001531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.055688 B =17864.808047 C =18282.091422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.095 4.095 3 C -0.148 4.148 4 C -0.109 4.109 5 C -0.028 4.028 6 C 0.174 3.826 7 N -0.400 5.400 8 O 0.066 5.934 9 C 0.242 3.758 10 C -0.174 4.174 11 C 0.025 3.975 12 C -0.199 4.199 13 C -0.041 4.041 14 C -0.198 4.198 15 C 0.167 3.833 16 O -0.159 6.159 17 C -0.392 4.392 18 H 0.099 0.901 19 C 0.042 3.958 20 N -0.849 5.849 21 Si 0.946 3.054 22 H -0.264 1.264 23 H -0.273 1.273 24 H -0.273 1.273 25 C -0.242 4.242 26 C -0.032 4.032 27 N -0.496 5.496 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.156 0.844 40 H 0.122 0.878 41 H 0.120 0.880 42 H 0.122 0.878 43 H 0.275 0.725 44 H 0.132 0.868 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.279 9.794 -21.485 23.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.113 4.113 3 C -0.205 4.205 4 C -0.148 4.148 5 C -0.067 4.067 6 C -0.099 4.099 7 N -0.112 5.112 8 O 0.009 5.991 9 C 0.029 3.971 10 C -0.194 4.194 11 C 0.002 3.998 12 C -0.200 4.200 13 C -0.060 4.060 14 C -0.217 4.217 15 C 0.110 3.890 16 O -0.060 6.060 17 C -0.467 4.467 18 H 0.116 0.884 19 C -0.165 4.165 20 N -0.481 5.481 21 Si 0.770 3.230 22 H -0.188 1.188 23 H -0.199 1.199 24 H -0.199 1.199 25 C -0.261 4.261 26 C -0.051 4.051 27 N -0.230 5.230 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.106 0.894 38 H 0.114 0.886 39 H 0.173 0.827 40 H 0.140 0.860 41 H 0.138 0.862 42 H 0.140 0.860 43 H 0.085 0.915 44 H 0.149 0.851 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.162 9.983 -21.835 24.037 hybrid contribution 0.675 -0.663 0.636 1.140 sum 1.837 9.320 -21.199 23.230 Atomic orbital electron populations 1.21923 0.94991 1.02055 1.01918 1.21102 0.96133 0.96296 0.97816 1.21835 1.01002 0.95794 1.01888 1.21628 1.01320 0.93059 0.98800 1.20027 1.02150 0.94317 0.90192 1.25676 0.88250 0.99289 0.96733 1.74547 1.21076 1.16107 0.99420 1.85406 1.38345 1.57499 1.17846 1.26741 0.81601 0.92538 0.96235 1.20511 1.03413 1.09403 0.86076 1.22288 0.96377 0.88599 0.92502 1.18285 0.97486 1.10617 0.93644 1.20898 0.95269 0.96166 0.93635 1.20162 0.99975 1.06598 0.94950 1.19623 0.92608 0.91825 0.84900 1.83914 1.45641 1.56653 1.19777 1.21554 0.98944 1.26238 1.00002 0.88361 1.25417 0.97782 0.97546 0.95748 1.70029 1.23235 1.41017 1.13803 0.85569 0.79229 0.78996 0.79246 1.18811 1.19871 1.19851 1.21100 0.99135 1.09333 0.96569 1.20962 0.96966 0.93727 0.93402 1.72279 1.29359 1.19723 1.01607 0.92700 0.92325 0.92426 0.91017 0.92684 0.92584 0.92554 0.91136 0.91612 0.89391 0.88584 0.82706 0.86037 0.86181 0.85998 0.91534 0.85056 0.86716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 8.95 37.15 0.33 -0.59 16 2 C -0.09 -0.61 2.92 -90.62 -0.26 -0.88 16 3 C -0.15 -0.90 9.19 37.16 0.34 -0.55 16 4 C -0.11 -0.91 4.66 -26.73 -0.12 -1.03 16 5 C -0.03 -0.26 5.60 -27.88 -0.16 -0.42 16 6 C 0.17 2.30 7.44 -156.64 -1.17 1.13 16 7 N -0.40 -5.76 12.14 31.31 0.38 -5.38 16 8 O 0.07 0.94 11.03 16.02 0.18 1.11 16 9 C 0.24 3.38 8.12 -14.22 -0.12 3.26 16 10 C -0.17 -2.21 9.58 -37.49 -0.36 -2.57 16 11 C 0.02 0.32 9.57 -37.20 -0.36 -0.04 16 12 C -0.20 -3.06 5.87 -105.02 -0.62 -3.68 16 13 C -0.04 -0.66 9.40 -39.15 -0.37 -1.03 16 14 C -0.20 -3.77 9.97 -39.47 -0.39 -4.16 16 15 C 0.17 3.68 6.66 -38.90 -0.26 3.43 16 16 O -0.16 -4.20 9.75 0.61 0.01 -4.19 16 17 C -0.39 -10.10 9.48 30.90 0.29 -9.80 16 18 H 0.10 2.31 5.18 -52.48 -0.27 2.04 16 19 C 0.04 1.06 5.49 -17.52 -0.10 0.97 16 20 N -0.85 -23.22 13.67 55.48 0.76 -22.46 16 21 Si 0.95 18.98 29.55 -169.99 -5.02 13.96 16 22 H -0.26 -5.06 7.11 56.52 0.40 -4.65 16 23 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 24 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 25 C -0.24 -4.72 9.14 -39.46 -0.36 -5.08 16 26 C -0.03 -0.52 9.78 -39.15 -0.38 -0.90 16 27 N -0.50 -7.18 11.60 -10.31 -0.12 -7.30 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.35 6.56 -51.93 -0.34 0.01 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.10 0.81 6.56 -51.93 -0.34 0.47 16 39 H 0.16 1.86 6.06 -52.49 -0.32 1.54 16 40 H 0.12 1.34 7.82 -52.48 -0.41 0.93 16 41 H 0.12 1.57 6.16 -52.49 -0.32 1.25 16 42 H 0.12 2.23 8.06 -52.49 -0.42 1.81 16 43 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 44 H 0.13 2.54 5.62 -52.49 -0.29 2.25 16 45 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 382.58 15.07 5.77 5.77 Total: -1.00 -28.78 382.58 -8.19 -36.97 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -6.09 Total: 3.48 kcal Atomic # 6 Polarization: -17.90 SS G_CDS: -4.05 Total: -21.95 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: 1.02 Total: -35.14 kcal Atomic # 8 Polarization: -3.26 SS G_CDS: 0.18 Total: -3.08 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.02 Total: 13.96 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -28.78 -8.19 -36.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264645364.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.335 kcal (2) G-P(sol) polarization free energy of solvation -28.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds