Wall clock time and date at job start Tue Mar 31 2020 15:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47323 * 2 1 4 4 C 1.53003 * 109.47334 * 120.00358 * 2 1 3 5 5 C 1.52995 * 109.47158 * 64.99642 * 4 2 1 6 6 C 1.50705 * 109.47115 * 180.02562 * 5 4 2 7 7 N 1.30105 * 126.13928 * 270.04044 * 6 5 4 8 8 O 1.21280 * 110.59006 * 179.97438 * 7 6 5 9 9 C 1.34432 * 109.64224 * 359.97438 * 8 7 6 10 10 C 1.46384 * 126.73301 * 179.97438 * 9 8 7 11 11 C 1.34894 * 119.99677 * 0.03606 * 10 9 8 12 12 C 1.47034 * 119.99960 * 179.97438 * 11 10 9 13 13 C 1.39989 * 120.09661 * 359.71800 * 12 11 10 14 14 C 1.37630 * 119.89439 * 179.69743 * 13 12 11 15 15 C 1.39146 * 120.10465 * 0.60348 * 14 13 12 16 16 O 1.35601 * 119.90413 * 179.69540 * 15 14 13 17 17 C 1.34793 * 117.00008 * 174.41987 * 16 15 14 18 18 H 1.08005 * 120.00009 * 5.06498 * 17 16 15 19 19 C 1.38679 * 119.99984 * 185.05172 * 17 16 15 20 20 N 1.31535 * 120.00069 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00006 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47075 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46899 * 120.00601 * 21 19 17 24 24 H 1.48504 * 109.46963 * 240.00256 * 21 19 17 25 25 C 1.39155 * 120.19615 * 359.67117 * 15 14 13 26 26 C 1.37628 * 120.10268 * 0.02576 * 25 15 14 27 27 N 1.32616 * 106.53566 * 0.02562 * 9 8 7 28 28 H 1.09004 * 109.47215 * 59.99721 * 1 2 3 29 29 H 1.09001 * 109.47364 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46984 * 299.99858 * 1 2 3 31 31 H 1.09004 * 109.46984 * 240.00142 * 2 1 3 32 32 H 1.08998 * 109.47048 * 180.02562 * 3 2 1 33 33 H 1.08994 * 109.46685 * 300.00192 * 3 2 1 34 34 H 1.08999 * 109.46551 * 60.00002 * 3 2 1 35 35 H 1.09005 * 109.46736 * 304.99540 * 4 2 1 36 36 H 1.09002 * 109.47268 * 184.99597 * 4 2 1 37 37 H 1.09005 * 109.47381 * 60.00292 * 5 4 2 38 38 H 1.09007 * 109.47433 * 300.00282 * 5 4 2 39 39 H 1.07996 * 120.00141 * 180.02562 * 10 9 8 40 40 H 1.08006 * 120.00111 * 359.97438 * 11 10 9 41 41 H 1.07994 * 120.04852 * 359.97438 * 13 12 11 42 42 H 1.07999 * 119.94788 * 180.29989 * 14 13 12 43 43 H 0.96994 * 120.00377 * 179.97438 * 20 19 17 44 44 H 1.08000 * 119.95159 * 180.02562 * 25 15 14 45 45 H 1.07992 * 120.05709 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6352 -2.1955 1.1879 6 6 2.1371 -2.9058 2.4186 7 7 3.2909 -3.4928 2.5489 8 8 3.4022 -3.9734 3.6569 9 6 2.2882 -3.7303 4.3689 10 6 2.0238 -4.1417 5.7487 11 6 2.9528 -4.8393 6.4342 12 6 2.6876 -5.2521 7.8202 13 6 1.4740 -4.9172 8.4324 14 6 1.2276 -5.3112 9.7279 15 6 2.1874 -6.0304 10.4333 16 8 1.9428 -6.4111 11.7116 17 6 2.8611 -7.2025 12.3008 18 1 3.7811 -7.4379 11.7861 19 6 2.6249 -7.7143 13.5678 20 7 1.5044 -7.4278 14.1945 21 14 3.8979 -8.8105 14.3847 22 1 5.0617 -8.9782 13.4777 23 1 4.3467 -8.1861 15.6551 24 1 3.2973 -10.1382 14.6708 25 6 3.3975 -6.3605 9.8307 26 6 3.6502 -5.9762 8.5335 27 7 1.4752 -3.0456 3.5759 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6054 -0.2618 2.1370 36 1 3.1263 -0.6445 1.2951 37 1 2.0698 -2.6551 0.3001 38 1 0.5488 -2.2724 1.1420 39 1 1.0851 -3.8867 6.2178 40 1 3.8915 -5.0946 5.9649 41 1 0.7306 -4.3545 7.8874 42 1 0.2896 -5.0574 10.1994 43 1 1.3390 -7.7860 15.0805 44 1 4.1395 -6.9192 10.3817 45 1 4.5893 -6.2332 8.0665 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264645364.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:16:21 Heat of formation + Delta-G solvation = 38.880624 kcal Electronic energy + Delta-G solvation = -25254.050473 eV Core-core repulsion = 21432.476170 eV Total energy + Delta-G solvation = -3821.574303 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -46.43975 -40.82891 -38.64375 -38.31918 -36.66486 -35.70758 -34.34073 -33.12690 -31.94023 -31.31677 -29.49891 -28.01106 -27.51132 -26.00880 -25.25262 -24.09649 -23.49424 -22.42901 -20.92239 -20.74123 -19.76735 -19.04259 -18.86524 -18.23087 -17.32960 -16.50465 -16.27223 -16.09264 -16.01593 -15.62143 -15.58804 -15.04146 -14.91004 -14.68464 -14.28905 -14.18631 -13.87814 -13.65837 -13.50685 -13.45181 -13.26311 -13.05338 -12.93935 -12.80668 -12.59595 -12.55976 -12.34590 -12.20579 -12.09071 -12.03335 -11.98695 -11.56682 -11.51274 -11.39143 -11.18902 -10.91099 -10.25715 -9.86326 -8.62451 -8.51208 -6.17294 -0.64440 0.48333 0.61738 1.10117 1.37368 1.44312 1.55198 1.81988 1.85913 2.16075 2.63228 2.86226 3.01953 3.18848 3.44262 3.75197 3.88482 3.91167 3.95211 4.02977 4.12001 4.25451 4.31808 4.36418 4.47769 4.49805 4.57838 4.65414 4.73009 4.80128 4.84357 4.89787 4.95057 4.96355 5.03293 5.05644 5.09296 5.11289 5.20004 5.29693 5.31112 5.32935 5.45703 5.50633 5.57862 5.66187 5.77280 5.98807 6.12508 6.93321 7.14780 7.70625 8.70937 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.037371 B = 0.001567 C = 0.001531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.055688 B =17864.808047 C =18282.091422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.091 4.091 3 C -0.148 4.148 4 C -0.103 4.103 5 C -0.028 4.028 6 C 0.173 3.827 7 N -0.414 5.414 8 O 0.065 5.935 9 C 0.235 3.765 10 C -0.146 4.146 11 C 0.024 3.976 12 C -0.170 4.170 13 C -0.038 4.038 14 C -0.210 4.210 15 C 0.131 3.869 16 O -0.221 6.221 17 C -0.415 4.415 18 H 0.109 0.891 19 C -0.019 4.019 20 N -0.914 5.914 21 Si 1.019 2.981 22 H -0.248 1.248 23 H -0.270 1.270 24 H -0.270 1.270 25 C -0.250 4.250 26 C -0.031 4.031 27 N -0.508 5.508 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.081 0.919 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.051 0.949 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.102 0.898 38 H 0.106 0.894 39 H 0.167 0.833 40 H 0.148 0.852 41 H 0.156 0.844 42 H 0.118 0.882 43 H 0.274 0.726 44 H 0.126 0.874 45 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.460 10.707 -25.683 27.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.109 4.109 3 C -0.206 4.206 4 C -0.141 4.141 5 C -0.067 4.067 6 C -0.100 4.100 7 N -0.126 5.126 8 O 0.009 5.991 9 C 0.022 3.978 10 C -0.166 4.166 11 C 0.001 3.999 12 C -0.171 4.171 13 C -0.056 4.056 14 C -0.229 4.229 15 C 0.079 3.921 16 O -0.126 6.126 17 C -0.490 4.490 18 H 0.126 0.874 19 C -0.218 4.218 20 N -0.551 5.551 21 Si 0.838 3.162 22 H -0.171 1.171 23 H -0.195 1.195 24 H -0.195 1.195 25 C -0.269 4.269 26 C -0.049 4.049 27 N -0.242 5.242 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.099 0.901 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.120 0.880 38 H 0.125 0.875 39 H 0.184 0.816 40 H 0.166 0.834 41 H 0.173 0.827 42 H 0.137 0.863 43 H 0.083 0.917 44 H 0.143 0.857 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 2.366 10.922 -26.114 28.404 hybrid contribution 0.270 -0.630 1.236 1.413 sum 2.635 10.291 -24.878 27.052 Atomic orbital electron populations 1.21926 0.94622 1.02259 1.02086 1.21081 0.96379 0.96326 0.97122 1.21842 1.00970 0.95606 1.02157 1.21567 1.00739 0.92524 0.99311 1.20242 1.02816 0.94500 0.89136 1.26323 0.87693 0.98623 0.97353 1.74555 1.21745 1.16730 0.99590 1.85393 1.38348 1.57482 1.17884 1.26913 0.81687 0.92677 0.96557 1.20699 1.03441 1.07131 0.85314 1.22279 0.97731 0.88979 0.90882 1.18634 0.96340 1.07577 0.94550 1.21295 0.96423 0.95523 0.92347 1.20401 0.99623 1.06627 0.96234 1.20215 0.94419 0.92857 0.84625 1.83899 1.47044 1.59640 1.22040 1.21964 0.99497 1.26922 1.00662 0.87415 1.26610 0.99937 0.98998 0.96230 1.70167 1.26073 1.44316 1.14573 0.84523 0.76802 0.76735 0.78162 1.17145 1.19469 1.19469 1.21232 0.98185 1.09506 0.98004 1.21351 0.98717 0.92832 0.91966 1.72295 1.29860 1.19827 1.02231 0.91792 0.92096 0.93055 0.90092 0.92775 0.91626 0.93017 0.92311 0.92389 0.87971 0.87542 0.81590 0.83440 0.82660 0.86349 0.91657 0.85655 0.82785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 8.95 71.98 0.64 -0.84 16 2 C -0.09 -0.95 2.92 -10.79 -0.03 -0.98 16 3 C -0.15 -1.50 9.19 71.98 0.66 -0.84 16 4 C -0.10 -1.48 4.66 30.59 0.14 -1.34 16 5 C -0.03 -0.45 5.60 29.85 0.17 -0.28 16 6 C 0.17 4.09 7.44 138.56 1.03 5.12 16 7 N -0.41 -10.74 12.14 -57.90 -0.70 -11.44 16 8 O 0.06 1.62 11.03 67.41 0.74 2.36 16 9 C 0.24 5.68 8.12 86.80 0.70 6.38 16 10 C -0.15 -3.03 9.58 23.62 0.23 -2.81 16 11 C 0.02 0.48 9.57 23.81 0.23 0.71 16 12 C -0.17 -4.58 5.87 -20.12 -0.12 -4.70 16 13 C -0.04 -1.11 9.40 22.55 0.21 -0.90 16 14 C -0.21 -8.09 9.97 22.34 0.22 -7.86 16 15 C 0.13 6.02 6.66 22.71 0.15 6.17 16 16 O -0.22 -12.56 9.75 -20.73 -0.20 -12.76 16 17 C -0.41 -22.79 9.48 67.93 0.64 -22.14 16 18 H 0.11 5.35 5.18 -2.91 -0.02 5.34 16 19 C -0.02 -1.03 5.49 84.84 0.47 -0.57 16 20 N -0.91 -53.89 13.67 21.62 0.30 -53.59 16 21 Si 1.02 40.67 29.55 68.60 2.03 42.70 16 22 H -0.25 -9.05 7.11 99.48 0.71 -8.34 16 23 H -0.27 -10.41 7.11 99.48 0.71 -9.70 16 24 H -0.27 -10.41 7.11 99.48 0.71 -9.71 16 25 C -0.25 -9.76 9.14 22.35 0.20 -9.55 16 26 C -0.03 -0.90 9.78 22.55 0.22 -0.68 16 27 N -0.51 -13.10 11.60 -302.55 -3.51 -16.61 16 28 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 29 H 0.06 0.56 6.56 -2.39 -0.02 0.55 16 30 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 31 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 32 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 36 H 0.06 0.92 8.14 -2.39 -0.02 0.91 16 37 H 0.10 1.35 8.14 -2.38 -0.02 1.33 16 38 H 0.11 1.48 6.56 -2.38 -0.02 1.47 16 39 H 0.17 3.13 6.06 -2.91 -0.02 3.11 16 40 H 0.15 2.41 7.82 -2.91 -0.02 2.38 16 41 H 0.16 3.42 6.16 -2.91 -0.02 3.41 16 42 H 0.12 4.53 8.06 -2.91 -0.02 4.51 16 43 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 44 H 0.13 4.96 5.62 -2.91 -0.02 4.95 16 45 H 0.15 3.34 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -68.05 382.58 5.44 -62.62 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: 1.01 Total: 21.84 kcal Atomic # 6 Polarization: -40.89 SS G_CDS: 5.78 Total: -35.11 kcal Atomic # 7 Polarization: -77.73 SS G_CDS: -3.92 Total: -81.64 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.54 Total: -10.40 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 2.03 Total: 42.70 kcal Total: -68.05 5.44 -62.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264645364.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.497 kcal (2) G-P(sol) polarization free energy of solvation -68.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds