Wall clock time and date at job start Tue Mar 31 2020 15:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.47356 * 2 1 4 4 C 1.53001 * 109.47257 * 239.99926 * 2 1 3 5 5 C 1.50704 * 109.47119 * 119.99811 * 2 1 3 6 6 C 1.40467 * 119.76708 * 179.97438 * 5 2 1 7 7 C 1.36607 * 118.31765 * 180.02562 * 6 5 2 8 8 C 1.41166 * 117.79966 * 359.76776 * 7 6 5 9 9 O 1.22064 * 120.34547 * 180.24141 * 8 7 6 10 10 N 1.34675 * 119.30603 * 0.47377 * 8 7 6 11 11 C 1.46498 * 119.17050 * 179.78259 * 10 8 7 12 12 C 1.50701 * 109.47235 * 274.73069 * 11 10 8 13 13 C 1.38305 * 119.92910 * 270.25475 * 12 11 10 14 14 C 1.38104 * 120.06272 * 180.25358 * 13 12 11 15 15 C 1.38874 * 119.93265 * 359.47314 * 14 13 12 16 16 O 1.35749 * 120.06890 * 180.29770 * 15 14 13 17 17 C 1.34834 * 117.00013 * 354.46142 * 16 15 14 18 18 H 1.07996 * 120.00021 * 5.05939 * 17 16 15 19 19 C 1.38654 * 119.99707 * 185.05824 * 17 16 15 20 20 N 1.31550 * 120.00182 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99577 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47369 * 59.99976 * 21 19 17 23 23 H 1.48494 * 109.47142 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47275 * 300.00018 * 21 19 17 25 25 C 1.38882 * 119.86301 * 0.27303 * 15 14 13 26 26 C 1.38094 * 119.92975 * 0.02562 * 25 15 14 27 27 N 1.28389 * 121.65658 * 359.50971 * 10 8 7 28 28 H 1.08998 * 109.46910 * 299.99818 * 1 2 3 29 29 H 1.09003 * 109.46699 * 59.99964 * 1 2 3 30 30 H 1.08996 * 109.46872 * 179.97438 * 1 2 3 31 31 H 1.08990 * 109.47238 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.46442 * 300.00107 * 3 2 1 33 33 H 1.09002 * 109.46490 * 59.99650 * 3 2 1 34 34 H 1.08998 * 109.46923 * 300.00053 * 4 2 1 35 35 H 1.08999 * 109.46797 * 60.00088 * 4 2 1 36 36 H 1.08997 * 109.46951 * 180.02562 * 4 2 1 37 37 H 1.08002 * 120.84268 * 0.04708 * 6 5 2 38 38 H 1.07994 * 121.09993 * 180.02562 * 7 6 5 39 39 H 1.09006 * 109.47116 * 154.73218 * 11 10 8 40 40 H 1.08998 * 109.47244 * 34.73373 * 11 10 8 41 41 H 1.07990 * 119.96792 * 0.02562 * 13 12 11 42 42 H 1.08000 * 120.02708 * 179.74272 * 14 13 12 43 43 H 0.97006 * 119.99724 * 179.97438 * 20 19 17 44 44 H 1.08005 * 120.03486 * 180.02562 * 25 15 14 45 45 H 1.08006 * 119.96521 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0324 -0.7104 1.2305 6 6 3.4144 -0.8364 1.4477 7 6 3.8371 -1.4863 2.5724 8 6 2.8533 -1.9881 3.4518 9 8 3.1790 -2.5726 4.4727 10 7 1.5517 -1.8192 3.1501 11 6 0.5332 -2.3453 4.0624 12 6 0.2721 -3.7945 3.7418 13 6 -0.7023 -4.1326 2.8203 14 6 -0.9475 -5.4600 2.5283 15 6 -0.2071 -6.4552 3.1529 16 8 -0.4417 -7.7605 2.8634 17 6 -1.4822 -8.0296 2.0492 18 1 -2.0347 -7.2210 1.5939 19 6 -1.8428 -9.3443 1.7965 20 7 -1.1695 -10.3292 2.3507 21 14 -3.2839 -9.7170 0.6679 22 1 -3.0162 -9.1531 -0.6795 23 1 -3.4631 -11.1874 0.5629 24 1 -4.5185 -9.1068 1.2235 25 6 0.7742 -6.1121 4.0738 26 6 1.0105 -4.7833 4.3661 27 7 1.1809 -1.2043 2.0858 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7489 -1.2492 35 1 1.6768 -0.2074 -2.1392 36 1 3.1301 -0.7216 -1.2489 37 1 4.1250 -0.4294 0.7434 38 1 4.8890 -1.6085 2.7841 39 1 -0.3886 -1.7755 3.9454 40 1 0.8861 -2.2584 5.0900 41 1 -1.2744 -3.3581 2.3314 42 1 -1.7114 -5.7236 1.8118 43 1 -1.4220 -11.2490 2.1741 44 1 1.3520 -6.8838 4.5609 45 1 1.7738 -4.5159 5.0819 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264766590.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:52 Heat of formation + Delta-G solvation = 17.530926 kcal Electronic energy + Delta-G solvation = -27623.604477 eV Core-core repulsion = 23801.104382 eV Total energy + Delta-G solvation = -3822.500095 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.04223 -39.10161 -38.41512 -36.98412 -36.48310 -34.16564 -32.41022 -31.47821 -30.21202 -29.68738 -27.60567 -27.53562 -26.42049 -25.29041 -24.54449 -23.39786 -21.97840 -20.80149 -20.13301 -18.18678 -17.92448 -17.25218 -17.01333 -16.42809 -16.20355 -15.37515 -14.70961 -14.61604 -14.47074 -14.25153 -14.21415 -13.84618 -13.61725 -13.50981 -13.40635 -12.94752 -12.78988 -12.68849 -12.45041 -12.31414 -11.95940 -11.87898 -11.76803 -11.60868 -11.40002 -11.31202 -11.17782 -10.98117 -10.95786 -10.81344 -10.66294 -10.46538 -10.24850 -9.59490 -9.38326 -8.88399 -8.33196 -8.20501 -7.29078 -6.50184 -4.09062 0.55795 1.64518 1.91518 2.21744 2.67389 3.10095 3.11861 3.14265 3.44714 3.92570 3.96503 4.33938 4.51046 4.58754 4.66222 4.73616 4.81866 5.04773 5.08574 5.19546 5.22841 5.32248 5.33469 5.41363 5.51891 5.54607 5.56524 5.63047 5.68964 5.71114 5.72378 5.78643 5.87721 5.92179 6.00079 6.06224 6.14522 6.19555 6.27503 6.39584 6.68124 6.86916 7.00728 7.21117 7.31677 7.39165 7.72612 7.79093 7.94660 8.29920 8.94821 9.63900 10.67379 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014121 B = 0.003109 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.440119 B = 9003.195909 C =10211.410195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.002 3.998 3 C -0.139 4.139 4 C -0.142 4.142 5 C 0.051 3.949 6 C -0.064 4.064 7 C -0.194 4.194 8 C 0.475 3.525 9 O -0.532 6.532 10 N -0.331 5.331 11 C 0.171 3.829 12 C -0.223 4.223 13 C -0.043 4.043 14 C -0.241 4.241 15 C 0.164 3.836 16 O -0.173 6.173 17 C -0.394 4.394 18 H 0.093 0.907 19 C 0.040 3.960 20 N -0.860 5.860 21 Si 0.942 3.058 22 H -0.269 1.269 23 H -0.277 1.277 24 H -0.269 1.269 25 C -0.199 4.199 26 C -0.043 4.043 27 N -0.205 5.205 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.145 0.855 38 H 0.158 0.842 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.109 0.891 42 H 0.128 0.872 43 H 0.272 0.728 44 H 0.118 0.882 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.259 22.949 -5.583 24.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.000 4.000 3 C -0.197 4.197 4 C -0.200 4.200 5 C -0.119 4.119 6 C -0.088 4.088 7 C -0.224 4.224 8 C 0.274 3.726 9 O -0.411 6.411 10 N -0.151 5.151 11 C 0.053 3.947 12 C -0.226 4.226 13 C -0.062 4.062 14 C -0.260 4.260 15 C 0.110 3.890 16 O -0.075 6.075 17 C -0.470 4.470 18 H 0.110 0.890 19 C -0.164 4.164 20 N -0.494 5.494 21 Si 0.766 3.234 22 H -0.194 1.194 23 H -0.202 1.202 24 H -0.194 1.194 25 C -0.219 4.219 26 C -0.062 4.062 27 N -0.028 5.028 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.163 0.837 38 H 0.176 0.824 39 H 0.116 0.884 40 H 0.119 0.881 41 H 0.127 0.873 42 H 0.146 0.854 43 H 0.082 0.918 44 H 0.136 0.864 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 4.618 21.974 -4.653 22.931 hybrid contribution 0.246 -0.287 -0.689 0.786 sum 4.863 21.686 -5.342 22.858 Atomic orbital electron populations 1.21735 0.92763 1.02945 1.01651 1.19257 0.96931 0.94156 0.89671 1.21902 1.01107 0.94282 1.02404 1.21920 1.01121 1.00923 0.95997 1.21601 0.89920 1.02898 0.97503 1.22144 0.96135 0.94092 0.96395 1.22738 1.01232 1.02492 0.95920 1.18022 0.83185 0.82909 0.88532 1.90956 1.80172 1.42993 1.26937 1.47204 1.08207 1.42696 1.16947 1.20691 0.89814 0.92459 0.91710 1.19203 1.04173 0.92791 1.06388 1.20614 0.95461 0.95402 0.94745 1.21116 1.05762 0.92440 1.06713 1.19456 0.92672 0.85241 0.91667 1.83981 1.45846 1.18836 1.58870 1.21316 1.07868 0.93267 1.24549 0.88996 1.25318 0.98815 0.94313 0.98003 1.70032 1.38691 0.99633 1.41046 0.85765 0.79978 0.77981 0.79638 1.19437 1.20199 1.19396 1.20233 1.02622 0.96095 1.02917 1.20713 0.96537 0.91559 0.97351 1.70734 1.33451 1.03571 0.95038 0.92107 0.92532 0.91764 0.92352 0.91601 0.92355 0.92000 0.91571 0.92342 0.83729 0.82431 0.88360 0.88101 0.87278 0.85427 0.91837 0.86388 0.86117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.13 7.69 37.16 0.29 -0.85 16 2 C 0.00 0.02 0.85 -155.65 -0.13 -0.12 16 3 C -0.14 -0.83 8.29 37.16 0.31 -0.52 16 4 C -0.14 -1.03 8.29 37.16 0.31 -0.72 16 5 C 0.05 0.54 5.67 -82.36 -0.47 0.08 16 6 C -0.06 -0.61 8.80 -39.33 -0.35 -0.96 16 7 C -0.19 -2.32 10.13 -39.06 -0.40 -2.71 16 8 C 0.48 7.43 7.42 -15.19 -0.11 7.32 16 9 O -0.53 -9.84 15.43 4.86 0.08 -9.76 16 10 N -0.33 -4.88 3.22 -64.51 -0.21 -5.09 16 11 C 0.17 2.51 5.63 -5.19 -0.03 2.48 16 12 C -0.22 -4.02 5.42 -104.57 -0.57 -4.58 16 13 C -0.04 -0.81 9.69 -39.61 -0.38 -1.19 16 14 C -0.24 -5.30 9.17 -39.40 -0.36 -5.66 16 15 C 0.16 4.07 6.65 -39.11 -0.26 3.81 16 16 O -0.17 -5.00 9.76 0.04 0.00 -5.00 16 17 C -0.39 -11.04 9.49 30.89 0.29 -10.75 16 18 H 0.09 2.37 5.20 -52.49 -0.27 2.10 16 19 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 20 N -0.86 -25.26 13.67 55.48 0.76 -24.50 16 21 Si 0.94 20.41 29.55 -169.99 -5.02 15.39 16 22 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 23 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 24 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 25 C -0.20 -4.47 9.99 -39.40 -0.39 -4.86 16 26 C -0.04 -0.84 9.34 -39.61 -0.37 -1.21 16 27 N -0.20 -2.67 9.53 33.73 0.32 -2.35 16 28 H 0.06 0.53 8.06 -51.93 -0.42 0.12 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.65 8.06 -51.93 -0.42 0.23 16 31 H 0.06 0.29 7.42 -51.93 -0.39 -0.09 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.36 7.42 -51.93 -0.39 -0.03 16 37 H 0.14 0.87 7.22 -52.49 -0.38 0.49 16 38 H 0.16 1.56 8.06 -52.49 -0.42 1.14 16 39 H 0.10 1.21 8.06 -51.93 -0.42 0.80 16 40 H 0.10 1.43 7.46 -51.93 -0.39 1.05 16 41 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 42 H 0.13 2.78 5.64 -52.49 -0.30 2.49 16 43 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 44 H 0.12 2.58 8.06 -52.48 -0.42 2.16 16 45 H 0.12 2.28 7.12 -52.48 -0.37 1.90 16 LS Contribution 375.35 15.07 5.66 5.66 Total: -1.00 -33.08 375.35 -7.39 -40.47 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -6.25 Total: 4.63 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: -2.72 Total: -19.44 kcal Atomic # 7 Polarization: -32.81 SS G_CDS: 0.87 Total: -31.94 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: 0.08 Total: -14.76 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.08 -7.39 -40.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264766590.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.999 kcal (2) G-P(sol) polarization free energy of solvation -33.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds