Wall clock time and date at job start Tue Mar 31 2020 15:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.47356 * 2 1 4 4 C 1.53001 * 109.47257 * 239.99926 * 2 1 3 5 5 C 1.50704 * 109.47119 * 119.99811 * 2 1 3 6 6 C 1.40467 * 119.76708 * 179.97438 * 5 2 1 7 7 C 1.36607 * 118.31765 * 180.02562 * 6 5 2 8 8 C 1.41166 * 117.79966 * 359.76776 * 7 6 5 9 9 O 1.22064 * 120.34547 * 180.24141 * 8 7 6 10 10 N 1.34675 * 119.30603 * 0.47377 * 8 7 6 11 11 C 1.46498 * 119.17050 * 179.78259 * 10 8 7 12 12 C 1.50701 * 109.47235 * 274.73069 * 11 10 8 13 13 C 1.38305 * 119.92910 * 270.25475 * 12 11 10 14 14 C 1.38104 * 120.06272 * 180.25358 * 13 12 11 15 15 C 1.38874 * 119.93265 * 359.47314 * 14 13 12 16 16 O 1.35749 * 120.06890 * 180.29770 * 15 14 13 17 17 C 1.34834 * 117.00013 * 354.46142 * 16 15 14 18 18 H 1.07996 * 120.00021 * 5.05939 * 17 16 15 19 19 C 1.38654 * 119.99707 * 185.05824 * 17 16 15 20 20 N 1.31550 * 120.00182 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99577 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47369 * 59.99976 * 21 19 17 23 23 H 1.48494 * 109.47142 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47275 * 300.00018 * 21 19 17 25 25 C 1.38882 * 119.86301 * 0.27303 * 15 14 13 26 26 C 1.38094 * 119.92975 * 0.02562 * 25 15 14 27 27 N 1.28389 * 121.65658 * 359.50971 * 10 8 7 28 28 H 1.08998 * 109.46910 * 299.99818 * 1 2 3 29 29 H 1.09003 * 109.46699 * 59.99964 * 1 2 3 30 30 H 1.08996 * 109.46872 * 179.97438 * 1 2 3 31 31 H 1.08990 * 109.47238 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.46442 * 300.00107 * 3 2 1 33 33 H 1.09002 * 109.46490 * 59.99650 * 3 2 1 34 34 H 1.08998 * 109.46923 * 300.00053 * 4 2 1 35 35 H 1.08999 * 109.46797 * 60.00088 * 4 2 1 36 36 H 1.08997 * 109.46951 * 180.02562 * 4 2 1 37 37 H 1.08002 * 120.84268 * 0.04708 * 6 5 2 38 38 H 1.07994 * 121.09993 * 180.02562 * 7 6 5 39 39 H 1.09006 * 109.47116 * 154.73218 * 11 10 8 40 40 H 1.08998 * 109.47244 * 34.73373 * 11 10 8 41 41 H 1.07990 * 119.96792 * 0.02562 * 13 12 11 42 42 H 1.08000 * 120.02708 * 179.74272 * 14 13 12 43 43 H 0.97006 * 119.99724 * 179.97438 * 20 19 17 44 44 H 1.08005 * 120.03486 * 180.02562 * 25 15 14 45 45 H 1.08006 * 119.96521 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0324 -0.7104 1.2305 6 6 3.4144 -0.8364 1.4477 7 6 3.8371 -1.4863 2.5724 8 6 2.8533 -1.9881 3.4518 9 8 3.1790 -2.5726 4.4727 10 7 1.5517 -1.8192 3.1501 11 6 0.5332 -2.3453 4.0624 12 6 0.2721 -3.7945 3.7418 13 6 -0.7023 -4.1326 2.8203 14 6 -0.9475 -5.4600 2.5283 15 6 -0.2071 -6.4552 3.1529 16 8 -0.4417 -7.7605 2.8634 17 6 -1.4822 -8.0296 2.0492 18 1 -2.0347 -7.2210 1.5939 19 6 -1.8428 -9.3443 1.7965 20 7 -1.1695 -10.3292 2.3507 21 14 -3.2839 -9.7170 0.6679 22 1 -3.0162 -9.1531 -0.6795 23 1 -3.4631 -11.1874 0.5629 24 1 -4.5185 -9.1068 1.2235 25 6 0.7742 -6.1121 4.0738 26 6 1.0105 -4.7833 4.3661 27 7 1.1809 -1.2043 2.0858 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7489 -1.2492 35 1 1.6768 -0.2074 -2.1392 36 1 3.1301 -0.7216 -1.2489 37 1 4.1250 -0.4294 0.7434 38 1 4.8890 -1.6085 2.7841 39 1 -0.3886 -1.7755 3.9454 40 1 0.8861 -2.2584 5.0900 41 1 -1.2744 -3.3581 2.3314 42 1 -1.7114 -5.7236 1.8118 43 1 -1.4220 -11.2490 2.1741 44 1 1.3520 -6.8838 4.5609 45 1 1.7738 -4.5159 5.0819 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264766590.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:14:51 Heat of formation + Delta-G solvation = -2.146060 kcal Electronic energy + Delta-G solvation = -27624.457735 eV Core-core repulsion = 23801.104382 eV Total energy + Delta-G solvation = -3823.353353 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.07185 -40.86887 -39.42168 -38.54476 -37.62108 -35.19673 -34.33712 -32.69810 -31.92116 -31.00957 -28.34719 -28.02587 -27.89594 -26.97590 -25.58374 -24.50367 -23.70315 -22.35155 -20.96940 -19.95002 -19.16380 -18.86402 -18.17135 -17.65764 -17.22243 -16.48787 -16.36603 -16.16057 -15.89656 -15.58693 -15.19369 -15.04528 -14.92199 -14.63738 -14.53434 -14.35047 -14.24168 -13.88642 -13.65571 -13.17405 -13.08342 -13.06452 -12.87472 -12.68058 -12.59284 -12.50064 -12.42029 -12.40109 -12.16850 -11.86721 -11.79089 -11.63848 -11.26991 -11.20504 -10.86311 -10.62873 -9.90665 -9.43380 -9.09875 -8.51937 -6.21474 -0.36964 0.38570 0.49030 0.66594 1.33429 1.39311 1.49466 1.50588 2.14815 2.43668 2.75924 3.07977 3.09374 3.39787 3.54991 3.79263 3.84130 3.88139 3.91747 4.08686 4.15303 4.16596 4.30008 4.40282 4.44750 4.52518 4.66273 4.72234 4.75782 4.86055 4.89811 4.94519 5.01463 5.02343 5.08014 5.11371 5.14442 5.16878 5.18627 5.29730 5.43882 5.44571 5.52796 5.58156 5.59475 5.65206 5.95959 6.06847 6.62942 6.91664 7.29011 7.69315 8.70826 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014121 B = 0.003109 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.440119 B = 9003.195909 C =10211.410195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.002 3.998 3 C -0.136 4.136 4 C -0.142 4.142 5 C 0.061 3.939 6 C -0.044 4.044 7 C -0.209 4.209 8 C 0.457 3.543 9 O -0.577 6.577 10 N -0.340 5.340 11 C 0.173 3.827 12 C -0.196 4.196 13 C -0.035 4.035 14 C -0.244 4.244 15 C 0.129 3.871 16 O -0.227 6.227 17 C -0.419 4.419 18 H 0.105 0.895 19 C -0.021 4.021 20 N -0.919 5.919 21 Si 1.021 2.979 22 H -0.255 1.255 23 H -0.271 1.271 24 H -0.255 1.255 25 C -0.213 4.213 26 C -0.042 4.042 27 N -0.229 5.229 28 H 0.055 0.945 29 H 0.074 0.926 30 H 0.042 0.958 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.052 0.948 34 H 0.038 0.962 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.190 0.810 38 H 0.175 0.825 39 H 0.128 0.872 40 H 0.104 0.896 41 H 0.146 0.854 42 H 0.127 0.873 43 H 0.274 0.726 44 H 0.110 0.890 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.130 27.128 -8.021 28.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.000 4.000 3 C -0.194 4.194 4 C -0.200 4.200 5 C -0.109 4.109 6 C -0.067 4.067 7 C -0.239 4.239 8 C 0.258 3.742 9 O -0.459 6.459 10 N -0.158 5.158 11 C 0.054 3.946 12 C -0.198 4.198 13 C -0.054 4.054 14 C -0.263 4.263 15 C 0.078 3.922 16 O -0.133 6.133 17 C -0.494 4.494 18 H 0.123 0.877 19 C -0.219 4.219 20 N -0.557 5.557 21 Si 0.840 3.160 22 H -0.179 1.179 23 H -0.196 1.196 24 H -0.179 1.179 25 C -0.232 4.232 26 C -0.061 4.061 27 N -0.051 5.051 28 H 0.074 0.926 29 H 0.093 0.907 30 H 0.062 0.938 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.071 0.929 34 H 0.058 0.942 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.207 0.793 38 H 0.193 0.807 39 H 0.146 0.854 40 H 0.123 0.877 41 H 0.164 0.836 42 H 0.145 0.855 43 H 0.083 0.917 44 H 0.128 0.872 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.493 26.229 -7.095 27.540 hybrid contribution 0.448 -1.167 0.071 1.252 sum 4.941 25.062 -7.024 26.492 Atomic orbital electron populations 1.21737 0.93276 1.01761 1.02341 1.19434 0.96634 0.95381 0.88541 1.21905 1.02151 0.92341 1.03009 1.21945 1.02184 0.99645 0.96189 1.22378 0.90576 1.00720 0.97249 1.22585 0.96369 0.91917 0.95812 1.22902 1.01394 1.03298 0.96263 1.18648 0.84048 0.82809 0.88709 1.90925 1.80788 1.45406 1.28806 1.46960 1.07704 1.43460 1.17664 1.20679 0.91457 0.90196 0.92250 1.19651 1.01784 0.94664 1.03720 1.20946 0.95389 0.94719 0.94312 1.21256 1.05321 0.93333 1.06405 1.19900 0.94195 0.84936 0.93196 1.83955 1.47426 1.20952 1.60965 1.21857 1.08315 0.94254 1.25022 0.87750 1.26673 1.01939 0.93657 0.99646 1.70186 1.41441 1.00169 1.43892 0.84620 0.75915 0.78005 0.77508 1.17929 1.19586 1.17923 1.20394 1.02522 0.97317 1.03003 1.20880 0.96872 0.90747 0.97555 1.70805 1.34130 1.04994 0.95208 0.92625 0.90707 0.93839 0.90730 0.89938 0.92932 0.94246 0.89750 0.90714 0.79274 0.80725 0.85441 0.87745 0.83594 0.85521 0.91662 0.87192 0.85184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.87 7.69 71.98 0.55 -1.32 16 2 C 0.00 0.03 0.85 -52.92 -0.05 -0.02 16 3 C -0.14 -0.98 8.29 71.98 0.60 -0.38 16 4 C -0.14 -1.49 8.29 71.98 0.60 -0.90 16 5 C 0.06 1.10 5.67 43.31 0.25 1.35 16 6 C -0.04 -0.66 8.80 22.43 0.20 -0.46 16 7 C -0.21 -4.50 10.13 22.61 0.23 -4.27 16 8 C 0.46 13.78 7.42 84.98 0.63 14.41 16 9 O -0.58 -21.33 15.43 -5.52 -0.09 -21.42 16 10 N -0.34 -9.40 3.22 -476.14 -1.53 -10.93 16 11 C 0.17 4.73 5.63 85.63 0.48 5.22 16 12 C -0.20 -6.84 5.42 -19.83 -0.11 -6.94 16 13 C -0.04 -1.26 9.69 22.25 0.22 -1.05 16 14 C -0.24 -10.87 9.17 22.39 0.21 -10.67 16 15 C 0.13 6.72 6.65 22.58 0.15 6.87 16 16 O -0.23 -14.04 9.76 -22.77 -0.22 -14.26 16 17 C -0.42 -24.62 9.49 67.92 0.64 -23.97 16 18 H 0.11 5.57 5.20 -2.91 -0.02 5.55 16 19 C -0.02 -1.21 5.49 84.83 0.47 -0.75 16 20 N -0.92 -57.01 13.67 21.61 0.30 -56.71 16 21 Si 1.02 42.66 29.55 68.60 2.03 44.69 16 22 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 23 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 24 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 25 C -0.21 -10.04 9.99 22.39 0.22 -9.82 16 26 C -0.04 -1.67 9.34 22.25 0.21 -1.46 16 27 N -0.23 -5.41 9.53 -47.21 -0.45 -5.86 16 28 H 0.05 0.83 8.06 -2.39 -0.02 0.81 16 29 H 0.07 0.76 8.14 -2.39 -0.02 0.75 16 30 H 0.04 0.79 8.06 -2.39 -0.02 0.77 16 31 H 0.07 0.32 7.42 -2.39 -0.02 0.30 16 32 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.07 0.55 7.42 -2.39 -0.02 0.53 16 37 H 0.19 1.15 7.22 -2.91 -0.02 1.13 16 38 H 0.18 3.05 8.06 -2.91 -0.02 3.02 16 39 H 0.13 2.75 8.06 -2.38 -0.02 2.73 16 40 H 0.10 2.82 7.46 -2.39 -0.02 2.80 16 41 H 0.15 4.18 8.06 -2.92 -0.02 4.16 16 42 H 0.13 5.60 5.64 -2.91 -0.02 5.58 16 43 H 0.27 15.56 8.31 -92.70 -0.77 14.78 16 44 H 0.11 5.21 8.06 -2.91 -0.02 5.18 16 45 H 0.13 4.98 7.12 -2.91 -0.02 4.96 16 Total: -1.00 -78.81 375.35 6.52 -72.28 By element: Atomic # 1 Polarization: 25.37 SS G_CDS: 1.00 Total: 26.36 kcal Atomic # 6 Polarization: -39.65 SS G_CDS: 5.49 Total: -34.15 kcal Atomic # 7 Polarization: -71.82 SS G_CDS: -1.69 Total: -73.50 kcal Atomic # 8 Polarization: -35.37 SS G_CDS: -0.31 Total: -35.68 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -78.81 6.52 -72.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264766590.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.138 kcal (2) G-P(sol) polarization free energy of solvation -78.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds