Wall clock time and date at job start Tue Mar 31 2020 15:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47185 * 2 1 4 4 C 1.53008 * 109.46496 * 119.99719 * 2 1 3 5 5 C 1.52998 * 109.47362 * 239.99287 * 2 1 3 6 6 H 1.08997 * 109.47030 * 180.02562 * 5 2 1 7 7 C 1.47197 * 109.47540 * 300.00648 * 5 2 1 8 8 N 3.43551 * 83.99528 * 201.44323 * 2 1 3 9 9 N 1.46506 * 109.46864 * 60.00416 * 5 2 1 10 10 C 1.34769 * 120.00061 * 154.99885 * 9 5 2 11 11 O 1.21727 * 119.99995 * 359.97438 * 10 9 5 12 12 C 1.46259 * 120.00014 * 179.97438 * 10 9 5 13 13 C 1.35021 * 119.99785 * 179.97438 * 12 10 9 14 14 C 1.46965 * 119.99953 * 180.02562 * 13 12 10 15 15 C 1.40023 * 120.09897 * 359.72949 * 14 13 12 16 16 C 1.37597 * 119.89748 * 179.69672 * 15 14 13 17 17 C 1.39180 * 120.10123 * 0.60574 * 16 15 14 18 18 O 1.35565 * 119.90124 * 179.69814 * 17 16 15 19 19 C 1.34782 * 117.00126 * 174.41551 * 18 17 16 20 20 H 1.07995 * 119.99749 * 5.05924 * 19 18 17 21 21 C 1.38720 * 119.99848 * 185.05110 * 19 18 17 22 22 N 1.31506 * 120.00097 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99808 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47151 * 90.00279 * 23 21 19 25 25 H 1.48497 * 109.46943 * 210.00134 * 23 21 19 26 26 H 1.48498 * 109.47116 * 330.00081 * 23 21 19 27 27 C 1.39178 * 120.19951 * 359.66601 * 17 16 15 28 28 C 1.37593 * 120.10275 * 0.03378 * 27 17 16 29 29 H 1.09000 * 109.46783 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46571 * 60.00352 * 1 2 3 31 31 H 1.09001 * 109.47170 * 300.00221 * 1 2 3 32 32 H 1.09001 * 109.47247 * 59.99826 * 3 2 1 33 33 H 1.08997 * 109.47086 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.47069 * 299.99895 * 3 2 1 35 35 H 1.09000 * 109.47433 * 60.00046 * 4 2 1 36 36 H 1.09006 * 109.46778 * 179.97438 * 4 2 1 37 37 H 1.08996 * 109.47027 * 300.00046 * 4 2 1 38 38 H 0.97002 * 119.99668 * 334.99684 * 9 5 2 39 39 H 1.07991 * 120.00010 * 0.02562 * 12 10 9 40 40 H 1.08000 * 120.00465 * 0.02562 * 13 12 10 41 41 H 1.08010 * 120.05211 * 359.97438 * 15 14 13 42 42 H 1.08005 * 119.95202 * 180.27410 * 16 15 14 43 43 H 0.97004 * 119.99754 * 180.02562 * 22 21 19 44 44 H 1.07999 * 119.94624 * 180.02562 * 27 17 16 45 45 H 1.07998 * 120.05142 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 1.2494 5 6 2.0401 -0.7214 -1.2491 6 1 3.1301 -0.7217 -1.2488 7 6 1.5494 -2.1091 -1.2491 8 7 1.1707 -3.1802 -1.2491 9 7 1.5518 -0.0308 -2.4454 10 6 2.2287 -0.1336 -3.6063 11 8 3.2459 -0.7999 -3.6607 12 6 1.7409 0.5553 -4.8006 13 6 2.4193 0.4527 -5.9635 14 6 1.9295 1.1454 -7.1636 15 6 0.7565 1.9078 -7.1047 16 6 0.3051 2.5597 -8.2292 17 6 1.0056 2.4520 -9.4270 18 8 0.5539 3.0911 -10.5339 19 6 1.3362 3.0429 -11.6304 20 1 2.2353 2.4448 -11.6263 21 6 0.9862 3.7615 -12.7642 22 7 -0.1086 4.4901 -12.7690 23 14 2.0701 3.6942 -14.2842 24 1 1.6282 2.5779 -15.1581 25 1 1.9624 4.9761 -15.0260 26 1 3.4811 3.4751 -13.8766 27 6 2.1690 1.6907 -9.4916 28 6 2.6312 1.0403 -8.3707 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6766 -1.7489 1.2494 36 1 3.1300 -0.7217 1.2492 37 1 1.6765 -0.2074 2.1393 38 1 0.7414 0.5004 -2.4019 39 1 0.8386 1.1468 -4.7522 40 1 3.3219 -0.1384 -6.0119 41 1 0.2093 1.9877 -6.1769 42 1 -0.5972 3.1516 -8.1837 43 1 -0.3534 4.9923 -13.5620 44 1 2.7096 1.6103 -10.4231 45 1 3.5342 0.4502 -8.4217 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267450151.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:56 Heat of formation + Delta-G solvation = -6.679322 kcal Electronic energy + Delta-G solvation = -25911.065598 eV Core-core repulsion = 22087.515668 eV Total energy + Delta-G solvation = -3823.549930 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.44201 -39.23837 -38.35538 -36.91017 -36.05730 -33.87666 -33.26311 -32.33441 -30.46896 -28.91723 -27.99275 -27.82042 -27.21140 -25.67084 -23.27342 -22.20386 -21.01947 -20.32437 -19.47751 -18.40108 -17.92419 -17.26781 -17.09780 -16.49861 -15.44148 -14.88263 -14.85685 -14.64937 -14.50669 -14.32013 -14.21417 -14.03983 -13.86481 -13.55203 -13.25479 -13.07709 -13.00972 -12.68087 -12.63112 -12.61897 -12.37155 -12.14556 -11.98161 -11.81308 -11.76392 -11.44859 -11.36121 -11.19080 -11.15420 -11.10175 -10.72076 -10.56666 -9.98298 -9.70144 -9.58483 -9.52711 -8.90083 -8.41948 -7.16326 -6.68531 -4.23144 0.98002 2.10369 2.21517 2.46879 2.50034 3.01639 3.02685 3.07738 3.22554 3.35586 3.70899 3.79627 4.08158 4.24847 4.43454 4.47283 4.77880 4.82042 4.89189 5.00302 5.06307 5.16615 5.19242 5.22563 5.28133 5.39563 5.41678 5.48139 5.49591 5.56070 5.62511 5.67154 5.77216 5.83042 5.97194 6.04400 6.07458 6.38664 6.42755 6.55876 6.74982 6.87880 7.08988 7.19020 7.22966 7.27011 7.32438 7.60161 7.76784 8.12931 8.76181 9.42685 10.47899 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.030249 B = 0.001813 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.414324 B =15441.478225 C =15800.290610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.069 4.069 3 C -0.141 4.141 4 C -0.146 4.146 5 C 0.252 3.748 6 H 0.129 0.871 7 C 0.200 3.800 8 N -0.422 5.422 9 N -0.724 5.724 10 C 0.560 3.440 11 O -0.550 6.550 12 C -0.288 4.288 13 C 0.046 3.954 14 C -0.202 4.202 15 C -0.041 4.041 16 C -0.200 4.200 17 C 0.167 3.833 18 O -0.161 6.161 19 C -0.393 4.393 20 H 0.098 0.902 21 C 0.042 3.958 22 N -0.851 5.851 23 Si 0.945 3.055 24 H -0.271 1.271 25 H -0.275 1.275 26 H -0.265 1.265 27 C -0.243 4.243 28 C -0.033 4.033 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.407 0.593 39 H 0.126 0.874 40 H 0.123 0.877 41 H 0.119 0.881 42 H 0.121 0.879 43 H 0.275 0.725 44 H 0.131 0.869 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.908 -3.507 22.681 23.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.070 4.070 3 C -0.199 4.199 4 C -0.204 4.204 5 C 0.143 3.857 6 H 0.147 0.853 7 C -0.120 4.120 8 N -0.098 5.098 9 N -0.378 5.378 10 C 0.353 3.647 11 O -0.429 6.429 12 C -0.309 4.309 13 C 0.026 3.974 14 C -0.203 4.203 15 C -0.059 4.059 16 C -0.219 4.219 17 C 0.111 3.889 18 O -0.062 6.062 19 C -0.468 4.468 20 H 0.115 0.885 21 C -0.165 4.165 22 N -0.483 5.483 23 Si 0.769 3.231 24 H -0.196 1.196 25 H -0.200 1.200 26 H -0.189 1.189 27 C -0.262 4.262 28 C -0.051 4.051 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.244 0.756 39 H 0.144 0.856 40 H 0.141 0.859 41 H 0.136 0.864 42 H 0.139 0.861 43 H 0.085 0.915 44 H 0.149 0.851 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 2.711 -5.263 22.366 23.136 hybrid contribution 0.192 0.533 -0.831 1.006 sum 2.904 -4.729 21.535 22.239 Atomic orbital electron populations 1.21994 0.93501 1.02508 1.02794 1.20813 0.96782 0.96583 0.92858 1.21870 1.01787 0.93372 1.02827 1.21919 1.01814 1.00315 0.96338 1.18378 1.00784 0.80112 0.86457 0.85324 1.29696 0.93570 0.95314 0.93469 1.81174 1.08814 1.12449 1.07412 1.45909 1.30475 1.52568 1.08852 1.18547 0.82936 0.80003 0.83257 1.90808 1.25165 1.41817 1.85125 1.22322 1.05393 1.10367 0.92797 1.22313 0.95100 0.89270 0.90676 1.18443 1.00068 1.08284 0.93525 1.20878 0.94235 0.93937 0.96887 1.20156 1.03346 1.07372 0.91051 1.19622 0.91444 0.90303 0.87557 1.83900 1.43737 1.61643 1.16879 1.21488 1.06408 1.30162 0.88784 0.88488 1.25406 0.97096 0.95048 0.98926 1.70012 1.22267 1.26118 1.29916 0.85640 0.79446 0.78386 0.79631 1.19618 1.20019 1.18916 1.21102 1.00225 1.05036 0.99829 1.20993 0.97183 0.95423 0.91547 0.92382 0.91994 0.91230 0.91582 0.91785 0.91639 0.92460 0.91613 0.91228 0.75565 0.85643 0.85866 0.86365 0.86103 0.91548 0.85102 0.86785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 8.05 37.16 0.30 -0.43 16 2 C -0.07 -0.35 0.59 -154.50 -0.09 -0.44 16 3 C -0.14 -0.59 8.32 37.16 0.31 -0.28 16 4 C -0.15 -0.69 8.22 37.16 0.31 -0.39 16 5 C 0.25 2.01 1.72 -70.72 -0.12 1.89 16 6 H 0.13 1.07 7.58 -51.93 -0.39 0.67 16 7 C 0.20 2.20 12.38 -20.76 -0.26 1.94 16 8 N -0.42 -5.76 18.54 42.15 0.78 -4.98 16 9 N -0.72 -6.19 4.27 -58.00 -0.25 -6.44 16 10 C 0.56 6.92 7.68 -13.04 -0.10 6.82 16 11 O -0.55 -8.72 15.89 5.16 0.08 -8.64 16 12 C -0.29 -3.54 9.41 -37.50 -0.35 -3.90 16 13 C 0.05 0.66 9.45 -37.19 -0.35 0.31 16 14 C -0.20 -3.29 5.87 -105.03 -0.62 -3.91 16 15 C -0.04 -0.67 9.40 -39.15 -0.37 -1.04 16 16 C -0.20 -3.87 9.97 -39.47 -0.39 -4.26 16 17 C 0.17 3.76 6.66 -38.88 -0.26 3.50 16 18 O -0.16 -4.29 9.74 0.75 0.01 -4.29 16 19 C -0.39 -10.28 9.48 30.91 0.29 -9.99 16 20 H 0.10 2.33 5.18 -52.49 -0.27 2.06 16 21 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 22 N -0.85 -23.50 13.67 55.48 0.76 -22.74 16 23 Si 0.95 19.26 29.55 -169.99 -5.02 14.24 16 24 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 25 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 26 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 27 C -0.24 -4.90 9.14 -39.47 -0.36 -5.26 16 28 C -0.03 -0.57 9.78 -39.15 -0.38 -0.95 16 29 H 0.06 0.37 7.23 -51.93 -0.38 0.00 16 30 H 0.06 0.25 6.51 -51.93 -0.34 -0.08 16 31 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 33 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 34 H 0.06 0.28 7.45 -51.93 -0.39 -0.10 16 35 H 0.06 0.35 7.23 -51.93 -0.38 -0.03 16 36 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 37 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.41 2.45 6.63 -40.82 -0.27 2.18 16 39 H 0.13 1.28 6.06 -52.49 -0.32 0.96 16 40 H 0.12 1.75 7.52 -52.49 -0.39 1.35 16 41 H 0.12 1.52 6.16 -52.48 -0.32 1.20 16 42 H 0.12 2.23 8.06 -52.48 -0.42 1.80 16 43 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 44 H 0.13 2.62 5.62 -52.49 -0.29 2.33 16 45 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 382.90 15.07 5.77 5.77 Total: -1.00 -31.79 382.90 -6.25 -38.04 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -5.84 Total: 4.44 kcal Atomic # 6 Polarization: -12.87 SS G_CDS: -2.55 Total: -15.41 kcal Atomic # 7 Polarization: -35.45 SS G_CDS: 1.29 Total: -34.16 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.09 Total: -12.92 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.02 Total: 14.24 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.79 -6.25 -38.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267450151.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.363 kcal (2) G-P(sol) polarization free energy of solvation -31.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds