Wall clock time and date at job start Tue Mar 31 2020 15:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47185 * 2 1 4 4 C 1.53008 * 109.46496 * 119.99719 * 2 1 3 5 5 C 1.52998 * 109.47362 * 239.99287 * 2 1 3 6 6 H 1.08997 * 109.47030 * 180.02562 * 5 2 1 7 7 C 1.47197 * 109.47540 * 300.00648 * 5 2 1 8 8 N 3.43551 * 83.99528 * 201.44323 * 2 1 3 9 9 N 1.46506 * 109.46864 * 60.00416 * 5 2 1 10 10 C 1.34769 * 120.00061 * 154.99885 * 9 5 2 11 11 O 1.21727 * 119.99995 * 359.97438 * 10 9 5 12 12 C 1.46259 * 120.00014 * 179.97438 * 10 9 5 13 13 C 1.35021 * 119.99785 * 179.97438 * 12 10 9 14 14 C 1.46965 * 119.99953 * 180.02562 * 13 12 10 15 15 C 1.40023 * 120.09897 * 359.72949 * 14 13 12 16 16 C 1.37597 * 119.89748 * 179.69672 * 15 14 13 17 17 C 1.39180 * 120.10123 * 0.60574 * 16 15 14 18 18 O 1.35565 * 119.90124 * 179.69814 * 17 16 15 19 19 C 1.34782 * 117.00126 * 174.41551 * 18 17 16 20 20 H 1.07995 * 119.99749 * 5.05924 * 19 18 17 21 21 C 1.38720 * 119.99848 * 185.05110 * 19 18 17 22 22 N 1.31506 * 120.00097 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99808 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47151 * 90.00279 * 23 21 19 25 25 H 1.48497 * 109.46943 * 210.00134 * 23 21 19 26 26 H 1.48498 * 109.47116 * 330.00081 * 23 21 19 27 27 C 1.39178 * 120.19951 * 359.66601 * 17 16 15 28 28 C 1.37593 * 120.10275 * 0.03378 * 27 17 16 29 29 H 1.09000 * 109.46783 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46571 * 60.00352 * 1 2 3 31 31 H 1.09001 * 109.47170 * 300.00221 * 1 2 3 32 32 H 1.09001 * 109.47247 * 59.99826 * 3 2 1 33 33 H 1.08997 * 109.47086 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.47069 * 299.99895 * 3 2 1 35 35 H 1.09000 * 109.47433 * 60.00046 * 4 2 1 36 36 H 1.09006 * 109.46778 * 179.97438 * 4 2 1 37 37 H 1.08996 * 109.47027 * 300.00046 * 4 2 1 38 38 H 0.97002 * 119.99668 * 334.99684 * 9 5 2 39 39 H 1.07991 * 120.00010 * 0.02562 * 12 10 9 40 40 H 1.08000 * 120.00465 * 0.02562 * 13 12 10 41 41 H 1.08010 * 120.05211 * 359.97438 * 15 14 13 42 42 H 1.08005 * 119.95202 * 180.27410 * 16 15 14 43 43 H 0.97004 * 119.99754 * 180.02562 * 22 21 19 44 44 H 1.07999 * 119.94624 * 180.02562 * 27 17 16 45 45 H 1.07998 * 120.05142 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 1.2494 5 6 2.0401 -0.7214 -1.2491 6 1 3.1301 -0.7217 -1.2488 7 6 1.5494 -2.1091 -1.2491 8 7 1.1707 -3.1802 -1.2491 9 7 1.5518 -0.0308 -2.4454 10 6 2.2287 -0.1336 -3.6063 11 8 3.2459 -0.7999 -3.6607 12 6 1.7409 0.5553 -4.8006 13 6 2.4193 0.4527 -5.9635 14 6 1.9295 1.1454 -7.1636 15 6 0.7565 1.9078 -7.1047 16 6 0.3051 2.5597 -8.2292 17 6 1.0056 2.4520 -9.4270 18 8 0.5539 3.0911 -10.5339 19 6 1.3362 3.0429 -11.6304 20 1 2.2353 2.4448 -11.6263 21 6 0.9862 3.7615 -12.7642 22 7 -0.1086 4.4901 -12.7690 23 14 2.0701 3.6942 -14.2842 24 1 1.6282 2.5779 -15.1581 25 1 1.9624 4.9761 -15.0260 26 1 3.4811 3.4751 -13.8766 27 6 2.1690 1.6907 -9.4916 28 6 2.6312 1.0403 -8.3707 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6766 -1.7489 1.2494 36 1 3.1300 -0.7217 1.2492 37 1 1.6765 -0.2074 2.1393 38 1 0.7414 0.5004 -2.4019 39 1 0.8386 1.1468 -4.7522 40 1 3.3219 -0.1384 -6.0119 41 1 0.2093 1.9877 -6.1769 42 1 -0.5972 3.1516 -8.1837 43 1 -0.3534 4.9923 -13.5620 44 1 2.7096 1.6103 -10.4231 45 1 3.5342 0.4502 -8.4217 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267450151.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:55 Heat of formation + Delta-G solvation = -25.845494 kcal Electronic energy + Delta-G solvation = -25911.896705 eV Core-core repulsion = 22087.515668 eV Total energy + Delta-G solvation = -3824.381038 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.31178 -40.79633 -39.23909 -38.42240 -36.92851 -34.74993 -34.68097 -33.96808 -31.94778 -30.09796 -28.65481 -28.19804 -27.96874 -27.39070 -24.54311 -23.67175 -22.22682 -21.08296 -20.52394 -19.83126 -19.03211 -18.64654 -18.27645 -17.27411 -16.52038 -16.45646 -16.02317 -15.77960 -15.65382 -15.56909 -15.37068 -14.92958 -14.78479 -14.70353 -14.57981 -14.10943 -14.07216 -13.83717 -13.59718 -13.35578 -13.27893 -13.14526 -13.01072 -12.81799 -12.70397 -12.56547 -12.51199 -12.19941 -12.12547 -11.90356 -11.75549 -11.64503 -11.20217 -11.10486 -11.06667 -10.61755 -10.44087 -9.87150 -8.67205 -8.51650 -6.17596 -0.24839 0.60742 1.11419 1.35646 1.36276 1.46064 1.53175 1.63986 2.15656 2.27966 2.36755 2.84812 2.92326 3.19636 3.44108 3.53872 3.75930 3.83044 3.96854 4.02308 4.10557 4.28097 4.35728 4.37473 4.46105 4.51722 4.67984 4.76650 4.85980 4.92448 4.96640 5.03913 5.04890 5.07832 5.12526 5.20439 5.23059 5.28458 5.35406 5.38067 5.41312 5.52633 5.59926 5.65729 5.82968 5.98312 6.12654 6.40127 6.47606 6.92885 7.16997 7.70257 8.70294 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.030249 B = 0.001813 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.414324 B =15441.478225 C =15800.290610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.058 4.058 3 C -0.140 4.140 4 C -0.147 4.147 5 C 0.250 3.750 6 H 0.131 0.869 7 C 0.218 3.782 8 N -0.472 5.472 9 N -0.703 5.703 10 C 0.557 3.443 11 O -0.583 6.583 12 C -0.246 4.246 13 C 0.019 3.981 14 C -0.171 4.171 15 C -0.035 4.035 16 C -0.208 4.208 17 C 0.129 3.871 18 O -0.220 6.220 19 C -0.416 4.416 20 H 0.105 0.895 21 C -0.019 4.019 22 N -0.913 5.913 23 Si 1.018 2.982 24 H -0.264 1.264 25 H -0.271 1.271 26 H -0.252 1.252 27 C -0.251 4.251 28 C -0.041 4.041 29 H 0.038 0.962 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.039 0.961 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.423 0.577 39 H 0.157 0.843 40 H 0.125 0.875 41 H 0.164 0.836 42 H 0.123 0.877 43 H 0.275 0.725 44 H 0.123 0.877 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.820 -3.929 26.250 26.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.059 4.059 3 C -0.197 4.197 4 C -0.205 4.205 5 C 0.141 3.859 6 H 0.149 0.851 7 C -0.101 4.101 8 N -0.149 5.149 9 N -0.358 5.358 10 C 0.349 3.651 11 O -0.464 6.464 12 C -0.266 4.266 13 C -0.001 4.001 14 C -0.172 4.172 15 C -0.053 4.053 16 C -0.227 4.227 17 C 0.077 3.923 18 O -0.125 6.125 19 C -0.492 4.492 20 H 0.122 0.878 21 C -0.217 4.217 22 N -0.550 5.550 23 Si 0.837 3.163 24 H -0.189 1.189 25 H -0.195 1.195 26 H -0.176 1.176 27 C -0.270 4.270 28 C -0.059 4.059 29 H 0.058 0.942 30 H 0.091 0.909 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.058 0.942 36 H 0.089 0.911 37 H 0.104 0.896 38 H 0.264 0.736 39 H 0.175 0.825 40 H 0.143 0.857 41 H 0.181 0.819 42 H 0.141 0.859 43 H 0.084 0.916 44 H 0.141 0.859 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.620 -5.711 26.025 26.889 hybrid contribution -0.013 0.388 -1.223 1.283 sum 3.607 -5.323 24.802 25.622 Atomic orbital electron populations 1.22035 0.93077 1.01697 1.04181 1.20798 0.97003 0.96949 0.91200 1.21885 1.01831 0.92258 1.03743 1.21950 1.02241 0.99456 0.96860 1.18738 1.00955 0.78841 0.87379 0.85126 1.30241 0.92267 0.95609 0.91974 1.81194 1.10560 1.14068 1.09073 1.45740 1.30413 1.51625 1.08006 1.18618 0.82683 0.79655 0.84163 1.90820 1.26744 1.43122 1.85728 1.22706 1.04771 1.07360 0.91807 1.22190 0.96371 0.91019 0.90475 1.18778 0.98847 1.05786 0.93789 1.21315 0.94161 0.92420 0.97400 1.20445 1.03372 1.07791 0.91058 1.20217 0.93057 0.91091 0.87919 1.83882 1.45420 1.65036 1.18143 1.21883 1.07022 1.30819 0.89460 0.87755 1.26595 0.98536 0.94568 1.02046 1.70145 1.24954 1.28862 1.31037 0.84595 0.77862 0.78524 0.75343 1.18880 1.19546 1.17602 1.21198 0.99745 1.05281 1.00757 1.21321 0.98336 0.95258 0.90951 0.94245 0.90896 0.89682 0.90121 0.91811 0.91333 0.94184 0.91061 0.89605 0.73630 0.82524 0.85714 0.81856 0.85887 0.91610 0.85932 0.83904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 8.05 71.98 0.58 -0.37 16 2 C -0.06 -0.39 0.59 -52.18 -0.03 -0.42 16 3 C -0.14 -0.56 8.32 71.98 0.60 0.03 16 4 C -0.15 -1.00 8.22 71.98 0.59 -0.41 16 5 C 0.25 3.22 1.72 43.18 0.07 3.29 16 6 H 0.13 1.77 7.58 -2.39 -0.02 1.76 16 7 C 0.22 4.40 12.38 89.44 1.11 5.51 16 8 N -0.47 -12.43 18.54 20.00 0.37 -12.06 16 9 N -0.70 -8.99 4.27 -455.61 -1.94 -10.93 16 10 C 0.56 11.37 7.68 86.33 0.66 12.03 16 11 O -0.58 -16.62 15.89 -4.43 -0.07 -16.69 16 12 C -0.25 -4.73 9.41 23.62 0.22 -4.51 16 13 C 0.02 0.46 9.45 23.82 0.23 0.69 16 14 C -0.17 -4.99 5.87 -20.13 -0.12 -5.11 16 15 C -0.04 -1.03 9.40 22.55 0.21 -0.82 16 16 C -0.21 -7.96 9.97 22.34 0.22 -7.73 16 17 C 0.13 6.03 6.66 22.72 0.15 6.18 16 18 O -0.22 -12.57 9.74 -20.22 -0.20 -12.76 16 19 C -0.42 -23.20 9.48 67.94 0.64 -22.55 16 20 H 0.11 5.32 5.18 -2.91 -0.02 5.31 16 21 C -0.02 -1.02 5.49 84.86 0.47 -0.55 16 22 N -0.91 -53.95 13.67 21.62 0.30 -53.65 16 23 Si 1.02 41.22 29.55 68.60 2.03 43.24 16 24 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 25 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 26 H -0.25 -9.50 7.11 99.48 0.71 -8.79 16 27 C -0.25 -10.30 9.14 22.34 0.20 -10.09 16 28 C -0.04 -1.33 9.78 22.55 0.22 -1.11 16 29 H 0.04 0.41 7.23 -2.39 -0.02 0.40 16 30 H 0.07 0.28 6.51 -2.39 -0.02 0.26 16 31 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.08 0.15 8.14 -2.39 -0.02 0.13 16 33 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 34 H 0.07 0.25 7.45 -2.39 -0.02 0.24 16 35 H 0.04 0.42 7.23 -2.39 -0.02 0.41 16 36 H 0.07 0.41 8.14 -2.38 -0.02 0.39 16 37 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 38 H 0.42 2.84 6.63 -92.71 -0.61 2.22 16 39 H 0.16 2.06 6.06 -2.92 -0.02 2.04 16 40 H 0.13 3.09 7.52 -2.91 -0.02 3.07 16 41 H 0.16 3.22 6.16 -2.91 -0.02 3.20 16 42 H 0.12 4.57 8.06 -2.91 -0.02 4.55 16 43 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 44 H 0.12 5.13 5.62 -2.91 -0.02 5.12 16 45 H 0.14 3.80 8.06 -2.91 -0.02 3.78 16 Total: -1.00 -76.07 382.90 6.93 -69.14 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: 0.42 Total: 19.65 kcal Atomic # 6 Polarization: -31.97 SS G_CDS: 6.03 Total: -25.94 kcal Atomic # 7 Polarization: -75.36 SS G_CDS: -1.28 Total: -76.64 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -0.27 Total: -29.45 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.24 kcal Total: -76.07 6.93 -69.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267450151.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.291 kcal (2) G-P(sol) polarization free energy of solvation -76.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds