Wall clock time and date at job start Tue Mar 31 2020 15:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47500 * 2 1 4 4 C 1.53006 * 109.47328 * 175.47880 * 3 2 1 5 5 C 1.53001 * 109.46837 * 294.42271 * 4 3 2 6 6 N 1.46498 * 109.47224 * 295.47934 * 3 2 1 7 7 C 1.34956 * 126.03528 * 274.99844 * 6 3 2 8 8 C 1.35315 * 107.74389 * 180.20506 * 7 6 3 9 9 C 1.39872 * 107.92107 * 359.63774 * 8 7 6 10 10 C 1.50700 * 125.89779 * 180.13865 * 9 8 7 11 11 S 1.81398 * 109.47205 * 270.24113 * 10 9 8 12 12 O 1.42092 * 108.57950 * 294.48460 * 11 10 9 13 13 O 1.42096 * 108.58065 * 65.51557 * 11 10 9 14 14 C 1.81400 * 101.91924 * 179.97438 * 11 10 9 15 15 C 1.53001 * 109.47298 * 179.97438 * 14 11 10 16 16 C 1.52994 * 109.47543 * 180.02562 * 15 14 11 17 17 C 1.50703 * 109.47200 * 179.97438 * 16 15 14 18 18 H 1.07995 * 119.99818 * 0.02562 * 17 16 15 19 19 C 1.37885 * 119.99629 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00357 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99567 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47365 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46882 * 119.99937 * 21 19 17 24 24 H 1.48499 * 109.47573 * 240.00031 * 21 19 17 25 25 N 1.30837 * 108.20232 * 0.36742 * 9 8 7 26 26 H 1.09000 * 109.47332 * 66.52755 * 1 2 3 27 27 H 1.09002 * 109.47466 * 186.53496 * 1 2 3 28 28 H 1.09005 * 109.46917 * 306.53508 * 1 2 3 29 29 H 1.09004 * 109.46722 * 239.99879 * 2 1 3 30 30 H 1.09000 * 109.47241 * 120.00346 * 2 1 3 31 31 H 1.09001 * 109.47438 * 55.47896 * 3 2 1 32 32 H 1.08999 * 109.47017 * 54.42206 * 4 3 2 33 33 H 1.09001 * 109.46787 * 174.42529 * 4 3 2 34 34 H 1.09007 * 109.47355 * 306.21611 * 5 4 3 35 35 H 1.09000 * 109.47210 * 66.21561 * 5 4 3 36 36 H 1.09001 * 109.47399 * 186.21028 * 5 4 3 37 37 H 1.07999 * 126.12458 * 359.94058 * 7 6 3 38 38 H 1.07999 * 126.03911 * 179.77258 * 8 7 6 39 39 H 1.08997 * 109.46737 * 30.24205 * 10 9 8 40 40 H 1.08999 * 109.46846 * 150.23819 * 10 9 8 41 41 H 1.09000 * 109.47650 * 299.99804 * 14 11 10 42 42 H 1.09007 * 109.47305 * 60.00278 * 14 11 10 43 43 H 1.09005 * 109.47144 * 300.00609 * 15 14 11 44 44 H 1.09000 * 109.46869 * 60.00248 * 15 14 11 45 45 H 1.09005 * 109.47358 * 300.00429 * 16 15 14 46 46 H 1.09000 * 109.46876 * 60.00203 * 16 15 14 47 47 H 0.96993 * 120.00304 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5659 1.4439 0.1137 5 6 3.9762 0.8826 1.4766 6 7 1.6427 2.1009 -1.2469 7 6 2.3099 2.0506 -2.4189 8 6 1.6204 2.7903 -3.3180 9 6 0.4888 3.3036 -2.6757 10 6 -0.5619 4.1820 -3.3045 11 16 -0.0916 5.9229 -3.1079 12 8 -0.1130 6.2441 -1.7239 13 8 1.0926 6.1593 -3.8568 14 6 -1.4694 6.7774 -3.9216 15 6 -1.2435 8.2891 -3.8534 16 6 -2.4059 9.0099 -4.5391 17 6 -2.1837 10.4990 -4.4714 18 1 -1.3015 10.8918 -3.9880 19 6 -3.1063 11.3596 -5.0275 20 7 -4.1804 10.8812 -5.6166 21 14 -2.8313 13.2053 -4.9429 22 1 -1.5574 13.4839 -4.2324 23 1 -2.7612 13.7588 -6.3191 24 1 -3.9562 13.8404 -4.2105 25 7 0.5028 2.8936 -1.4333 26 1 -0.3634 0.4093 -0.9426 27 1 -0.3634 -1.0210 0.1170 28 1 -0.3633 0.6118 0.8258 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6121 1.9792 0.8467 32 1 3.9897 0.8245 -0.6768 33 1 3.9366 2.4641 0.0143 34 1 3.4642 1.4337 2.2656 35 1 3.7026 -0.1710 1.5331 36 1 5.0540 0.9852 1.6023 37 1 3.2315 1.5190 -2.6046 38 1 1.8941 2.9535 -4.3499 39 1 -0.6455 3.9458 -4.3653 40 1 -1.5209 4.0073 -2.8167 41 1 -1.5259 6.4649 -4.9643 42 1 -2.4019 6.5266 -3.4160 43 1 -1.1872 8.6014 -2.8106 44 1 -0.3110 8.5403 -4.3588 45 1 -2.4626 8.6977 -5.5819 46 1 -3.3382 8.7587 -4.0334 47 1 -4.8292 11.4866 -6.0081 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269364671.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:44 Heat of formation + Delta-G solvation = -21.052261 kcal Electronic energy + Delta-G solvation = -25508.795048 eV Core-core repulsion = 21820.065812 eV Total energy + Delta-G solvation = -3688.729236 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.58581 -37.44449 -36.67783 -35.73511 -34.60605 -32.91025 -32.34721 -32.15342 -30.20378 -29.21386 -27.76509 -25.89686 -23.67633 -23.34641 -22.51269 -20.77068 -20.04564 -20.01502 -18.60581 -17.58161 -16.79041 -16.25579 -15.96855 -15.85617 -15.50574 -15.14701 -14.80173 -14.44882 -14.38630 -14.15745 -14.11827 -13.66170 -13.49705 -12.83547 -12.71653 -12.59080 -12.54108 -12.42174 -12.21251 -12.04049 -11.85254 -11.72682 -11.66922 -11.52560 -11.37178 -11.31005 -11.17008 -10.91420 -10.90422 -10.82051 -10.77565 -10.33097 -9.88882 -9.47468 -9.27208 -9.06210 -8.74637 -8.37699 -6.02579 -4.05070 0.10441 1.67975 2.12861 2.57514 3.00185 3.32060 3.39429 3.44855 3.76090 3.92351 4.13950 4.22798 4.33323 4.45832 4.46710 4.49074 4.64722 4.71547 4.82372 4.87316 5.03998 5.07878 5.17726 5.20940 5.25695 5.27260 5.34115 5.38060 5.44721 5.50937 5.51986 5.56481 5.63662 5.69566 5.80480 5.89538 5.94477 6.35615 6.35970 6.52393 6.79277 6.93185 7.46325 7.61315 7.71425 7.96078 8.36994 9.01468 9.59394 11.08726 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.029799 B = 0.002085 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.416910 B =13426.067736 C =13614.901938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.135 4.135 3 C 0.158 3.842 4 C -0.136 4.136 5 C -0.149 4.149 6 N -0.358 5.358 7 C 0.054 3.946 8 C -0.257 4.257 9 C 0.071 3.929 10 C -0.537 4.537 11 S 2.410 3.590 12 O -0.932 6.932 13 O -0.935 6.935 14 C -0.592 4.592 15 C -0.105 4.105 16 C 0.029 3.971 17 C -0.524 4.524 18 H 0.059 0.941 19 C 0.056 3.944 20 N -0.896 5.896 21 Si 0.894 3.106 22 H -0.271 1.271 23 H -0.284 1.284 24 H -0.284 1.284 25 N -0.268 5.268 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.105 0.895 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.175 0.825 38 H 0.155 0.845 39 H 0.148 0.852 40 H 0.144 0.856 41 H 0.130 0.870 42 H 0.129 0.871 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.021 0.979 46 H 0.021 0.979 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.294 -26.696 9.412 31.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.173 4.173 3 C 0.056 3.944 4 C -0.175 4.175 5 C -0.207 4.207 6 N -0.141 5.141 7 C -0.092 4.092 8 C -0.286 4.286 9 C -0.095 4.095 10 C -0.664 4.664 11 S 2.592 3.408 12 O -0.929 6.929 13 O -0.932 6.932 14 C -0.724 4.724 15 C -0.144 4.144 16 C -0.009 4.009 17 C -0.562 4.562 18 H 0.077 0.923 19 C -0.145 4.145 20 N -0.535 5.535 21 Si 0.722 3.278 22 H -0.196 1.196 23 H -0.210 1.210 24 H -0.210 1.210 25 N -0.091 5.091 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.103 0.897 31 H 0.123 0.877 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.192 0.808 38 H 0.172 0.828 39 H 0.166 0.834 40 H 0.163 0.837 41 H 0.148 0.852 42 H 0.148 0.852 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.040 0.960 46 H 0.039 0.961 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 13.348 -26.398 10.997 31.559 hybrid contribution -0.336 0.504 -1.313 1.446 sum 13.012 -25.894 9.684 30.555 Atomic orbital electron populations 1.21749 0.94670 1.01621 1.02913 1.22029 0.97457 0.94621 1.03237 1.21542 0.95379 0.93338 0.84117 1.21934 0.92923 1.03104 0.99544 1.21769 1.01997 1.01242 0.95711 1.48788 1.17960 1.38202 1.09152 1.22462 0.99302 1.01398 0.85995 1.21466 0.97922 1.07083 1.02156 1.20953 0.96098 1.00304 0.92148 1.28923 1.05679 1.22500 1.09306 1.08604 0.78528 0.77115 0.76599 1.93570 1.87012 1.81355 1.30979 1.93555 1.43350 1.83022 1.73243 1.30330 1.17663 1.10893 1.13470 1.21520 1.03124 0.87081 1.02665 1.19095 0.91714 0.94490 0.95628 1.21303 1.06947 0.91347 1.36622 0.92285 1.25026 0.95131 0.99104 0.95214 1.69963 1.10860 1.34845 1.37813 0.86498 0.78266 0.85296 0.77748 1.19595 1.20975 1.20972 1.77397 1.04027 1.10503 1.17177 0.92340 0.92548 0.92207 0.91314 0.89653 0.87662 0.90801 0.90499 0.92024 0.92020 0.91707 0.80793 0.82765 0.83355 0.83743 0.85201 0.85240 0.91419 0.91388 0.96048 0.96069 0.92988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.72 37.16 0.36 -0.81 16 2 C -0.14 -0.81 5.48 -26.74 -0.15 -0.96 16 3 C 0.16 1.20 2.79 -67.93 -0.19 1.01 16 4 C -0.14 -0.74 4.91 -26.73 -0.13 -0.87 16 5 C -0.15 -0.59 9.53 37.16 0.35 -0.23 16 6 N -0.36 -3.89 3.09 -54.86 -0.17 -4.06 16 7 C 0.05 0.53 10.61 -17.22 -0.18 0.34 16 8 C -0.26 -3.00 10.74 -40.01 -0.43 -3.43 16 9 C 0.07 0.96 6.48 -82.40 -0.53 0.43 16 10 C -0.54 -6.10 6.37 36.01 0.23 -5.87 16 11 S 2.41 36.79 4.70 -107.50 -0.51 36.29 16 12 O -0.93 -17.66 18.10 -57.83 -1.05 -18.70 16 13 O -0.93 -16.80 18.10 -57.83 -1.05 -17.85 16 14 C -0.59 -9.06 5.81 37.16 0.22 -8.85 16 15 C -0.10 -2.18 5.16 -26.73 -0.14 -2.32 16 16 C 0.03 0.74 4.97 -27.88 -0.14 0.61 16 17 C -0.52 -14.96 9.11 -34.44 -0.31 -15.27 16 18 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.90 -26.77 13.29 55.43 0.74 -26.03 16 21 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 22 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 25 N -0.27 -3.78 12.27 33.67 0.41 -3.37 16 26 H 0.06 0.58 7.62 -51.93 -0.40 0.19 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.09 0.35 6.52 -51.93 -0.34 0.01 16 31 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 0.31 7.45 -51.93 -0.39 -0.08 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 35 H 0.06 0.19 6.79 -51.93 -0.35 -0.17 16 36 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 37 H 0.17 1.01 7.42 -52.49 -0.39 0.62 16 38 H 0.15 1.51 8.06 -52.49 -0.42 1.09 16 39 H 0.15 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.14 1.35 8.14 -51.92 -0.42 0.92 16 41 H 0.13 1.66 8.14 -51.92 -0.42 1.24 16 42 H 0.13 1.70 8.14 -51.92 -0.42 1.28 16 43 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 44 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 45 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 47 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 399.55 15.07 6.02 6.02 Total: -1.00 -38.19 399.55 -9.93 -48.11 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -8.17 Total: -2.53 kcal Atomic # 6 Polarization: -33.55 SS G_CDS: -1.14 Total: -34.69 kcal Atomic # 7 Polarization: -34.44 SS G_CDS: 0.98 Total: -33.46 kcal Atomic # 8 Polarization: -34.46 SS G_CDS: -2.09 Total: -36.55 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: 36.79 SS G_CDS: -0.51 Total: 36.29 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -38.19 -9.93 -48.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269364671.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.063 kcal (2) G-P(sol) polarization free energy of solvation -38.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds