Wall clock time and date at job start Tue Mar 31 2020 15:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 109.47500 * 2 1 4 4 C 1.53006 * 109.47328 * 175.47880 * 3 2 1 5 5 C 1.53001 * 109.46837 * 294.42271 * 4 3 2 6 6 N 1.46498 * 109.47224 * 295.47934 * 3 2 1 7 7 C 1.34956 * 126.03528 * 274.99844 * 6 3 2 8 8 C 1.35315 * 107.74389 * 180.20506 * 7 6 3 9 9 C 1.39872 * 107.92107 * 359.63774 * 8 7 6 10 10 C 1.50700 * 125.89779 * 180.13865 * 9 8 7 11 11 S 1.81398 * 109.47205 * 270.24113 * 10 9 8 12 12 O 1.42092 * 108.57950 * 294.48460 * 11 10 9 13 13 O 1.42096 * 108.58065 * 65.51557 * 11 10 9 14 14 C 1.81400 * 101.91924 * 179.97438 * 11 10 9 15 15 C 1.53001 * 109.47298 * 179.97438 * 14 11 10 16 16 C 1.52994 * 109.47543 * 180.02562 * 15 14 11 17 17 C 1.50703 * 109.47200 * 179.97438 * 16 15 14 18 18 H 1.07995 * 119.99818 * 0.02562 * 17 16 15 19 19 C 1.37885 * 119.99629 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00357 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99567 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47365 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46882 * 119.99937 * 21 19 17 24 24 H 1.48499 * 109.47573 * 240.00031 * 21 19 17 25 25 N 1.30837 * 108.20232 * 0.36742 * 9 8 7 26 26 H 1.09000 * 109.47332 * 66.52755 * 1 2 3 27 27 H 1.09002 * 109.47466 * 186.53496 * 1 2 3 28 28 H 1.09005 * 109.46917 * 306.53508 * 1 2 3 29 29 H 1.09004 * 109.46722 * 239.99879 * 2 1 3 30 30 H 1.09000 * 109.47241 * 120.00346 * 2 1 3 31 31 H 1.09001 * 109.47438 * 55.47896 * 3 2 1 32 32 H 1.08999 * 109.47017 * 54.42206 * 4 3 2 33 33 H 1.09001 * 109.46787 * 174.42529 * 4 3 2 34 34 H 1.09007 * 109.47355 * 306.21611 * 5 4 3 35 35 H 1.09000 * 109.47210 * 66.21561 * 5 4 3 36 36 H 1.09001 * 109.47399 * 186.21028 * 5 4 3 37 37 H 1.07999 * 126.12458 * 359.94058 * 7 6 3 38 38 H 1.07999 * 126.03911 * 179.77258 * 8 7 6 39 39 H 1.08997 * 109.46737 * 30.24205 * 10 9 8 40 40 H 1.08999 * 109.46846 * 150.23819 * 10 9 8 41 41 H 1.09000 * 109.47650 * 299.99804 * 14 11 10 42 42 H 1.09007 * 109.47305 * 60.00278 * 14 11 10 43 43 H 1.09005 * 109.47144 * 300.00609 * 15 14 11 44 44 H 1.09000 * 109.46869 * 60.00248 * 15 14 11 45 45 H 1.09005 * 109.47358 * 300.00429 * 16 15 14 46 46 H 1.09000 * 109.46876 * 60.00203 * 16 15 14 47 47 H 0.96993 * 120.00304 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5659 1.4439 0.1137 5 6 3.9762 0.8826 1.4766 6 7 1.6427 2.1009 -1.2469 7 6 2.3099 2.0506 -2.4189 8 6 1.6204 2.7903 -3.3180 9 6 0.4888 3.3036 -2.6757 10 6 -0.5619 4.1820 -3.3045 11 16 -0.0916 5.9229 -3.1079 12 8 -0.1130 6.2441 -1.7239 13 8 1.0926 6.1593 -3.8568 14 6 -1.4694 6.7774 -3.9216 15 6 -1.2435 8.2891 -3.8534 16 6 -2.4059 9.0099 -4.5391 17 6 -2.1837 10.4990 -4.4714 18 1 -1.3015 10.8918 -3.9880 19 6 -3.1063 11.3596 -5.0275 20 7 -4.1804 10.8812 -5.6166 21 14 -2.8313 13.2053 -4.9429 22 1 -1.5574 13.4839 -4.2324 23 1 -2.7612 13.7588 -6.3191 24 1 -3.9562 13.8404 -4.2105 25 7 0.5028 2.8936 -1.4333 26 1 -0.3634 0.4093 -0.9426 27 1 -0.3634 -1.0210 0.1170 28 1 -0.3633 0.6118 0.8258 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6121 1.9792 0.8467 32 1 3.9897 0.8245 -0.6768 33 1 3.9366 2.4641 0.0143 34 1 3.4642 1.4337 2.2656 35 1 3.7026 -0.1710 1.5331 36 1 5.0540 0.9852 1.6023 37 1 3.2315 1.5190 -2.6046 38 1 1.8941 2.9535 -4.3499 39 1 -0.6455 3.9458 -4.3653 40 1 -1.5209 4.0073 -2.8167 41 1 -1.5259 6.4649 -4.9643 42 1 -2.4019 6.5266 -3.4160 43 1 -1.1872 8.6014 -2.8106 44 1 -0.3110 8.5403 -4.3588 45 1 -2.4626 8.6977 -5.5819 46 1 -3.3382 8.7587 -4.0334 47 1 -4.8292 11.4866 -6.0081 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269364671.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:42 Heat of formation + Delta-G solvation = -47.030663 kcal Electronic energy + Delta-G solvation = -25509.921556 eV Core-core repulsion = 21820.065812 eV Total energy + Delta-G solvation = -3689.855744 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 328.161 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -42.38831 -38.02415 -38.00361 -37.06935 -36.42439 -34.15246 -33.70858 -32.82099 -31.01690 -30.11202 -29.51400 -26.57576 -25.54963 -23.81442 -23.20082 -22.41546 -21.09484 -20.69189 -19.82479 -18.62385 -18.27501 -17.69577 -17.22218 -16.84071 -16.57929 -16.41443 -15.83392 -15.61805 -15.47817 -14.91720 -14.85766 -14.49578 -14.44222 -14.27222 -14.02239 -13.49286 -13.40852 -13.36147 -13.12248 -13.07787 -13.03768 -12.98025 -12.89656 -12.75976 -12.58151 -12.56455 -12.28939 -12.09112 -11.94748 -11.86540 -11.72348 -11.65057 -11.58633 -11.34016 -10.98963 -10.57163 -10.23360 -9.57193 -8.22461 -6.32974 -1.09673 0.87270 1.39468 1.39958 1.41492 1.53576 1.68959 1.86845 2.39933 2.66169 3.05282 3.10812 3.27179 3.49387 3.73297 3.74913 3.81133 3.93980 3.95668 4.06154 4.22643 4.28808 4.36801 4.40620 4.45231 4.55166 4.60817 4.69487 4.72693 4.73235 4.87498 4.95564 4.97876 5.00269 5.04648 5.07853 5.09000 5.16419 5.29645 5.35915 5.46727 5.53673 5.65269 5.80593 6.09831 6.21240 6.60397 6.82328 7.35907 8.89127 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.029799 B = 0.002085 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.416910 B =13426.067736 C =13614.901938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C 0.148 3.852 4 C -0.130 4.130 5 C -0.147 4.147 6 N -0.357 5.357 7 C 0.062 3.938 8 C -0.279 4.279 9 C 0.043 3.957 10 C -0.512 4.512 11 S 2.417 3.583 12 O -0.979 6.979 13 O -0.969 6.969 14 C -0.592 4.592 15 C -0.107 4.107 16 C 0.030 3.970 17 C -0.552 4.552 18 H 0.057 0.943 19 C 0.002 3.998 20 N -0.928 5.928 21 Si 0.963 3.037 22 H -0.266 1.266 23 H -0.275 1.275 24 H -0.276 1.276 25 N -0.309 5.309 26 H 0.032 0.968 27 H 0.069 0.931 28 H 0.049 0.951 29 H 0.077 0.923 30 H 0.110 0.890 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.215 0.785 38 H 0.169 0.831 39 H 0.190 0.810 40 H 0.167 0.833 41 H 0.159 0.841 42 H 0.152 0.848 43 H 0.059 0.941 44 H 0.064 0.936 45 H 0.008 0.992 46 H 0.005 0.995 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.459 -28.708 9.311 33.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C 0.048 3.952 4 C -0.169 4.169 5 C -0.205 4.205 6 N -0.139 5.139 7 C -0.084 4.084 8 C -0.309 4.309 9 C -0.122 4.122 10 C -0.643 4.643 11 S 2.604 3.396 12 O -0.976 6.976 13 O -0.966 6.966 14 C -0.723 4.723 15 C -0.145 4.145 16 C -0.008 4.008 17 C -0.591 4.591 18 H 0.075 0.925 19 C -0.196 4.196 20 N -0.568 5.568 21 Si 0.788 3.212 22 H -0.190 1.190 23 H -0.200 1.200 24 H -0.202 1.202 25 N -0.134 5.134 26 H 0.051 0.949 27 H 0.088 0.912 28 H 0.068 0.932 29 H 0.096 0.904 30 H 0.128 0.872 31 H 0.109 0.891 32 H 0.112 0.888 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.232 0.768 38 H 0.187 0.813 39 H 0.207 0.793 40 H 0.185 0.815 41 H 0.177 0.823 42 H 0.170 0.830 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.027 0.973 46 H 0.023 0.977 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 14.520 -28.354 10.910 33.672 hybrid contribution -0.677 0.985 -1.238 1.721 sum 13.843 -27.368 9.672 32.159 Atomic orbital electron populations 1.21736 0.96136 1.01985 1.01058 1.22013 0.96019 0.93593 1.04841 1.21860 0.96892 0.93875 0.82583 1.21925 0.91032 1.02730 1.01186 1.21776 1.02339 1.01921 0.94481 1.49108 1.17065 1.37389 1.10385 1.23108 0.99885 1.00364 0.85005 1.21832 0.97881 1.07828 1.03374 1.21316 0.97310 1.01127 0.92465 1.28685 1.06207 1.17133 1.12297 1.08068 0.77726 0.78794 0.75060 1.93509 1.87447 1.83335 1.33326 1.93504 1.45008 1.84644 1.73407 1.30250 1.19053 1.07006 1.15943 1.21312 1.00981 0.90790 1.01451 1.18994 0.92859 0.93898 0.95096 1.21765 1.07113 0.93325 1.36852 0.92507 1.25928 0.94801 1.04158 0.94700 1.70064 1.11641 1.36673 1.38427 0.85426 0.78433 0.79237 0.78140 1.19029 1.20035 1.20159 1.77312 1.06162 1.12035 1.17892 0.94883 0.91186 0.93208 0.90394 0.87175 0.89149 0.88835 0.92103 0.92678 0.90515 0.91030 0.76829 0.81326 0.79280 0.81496 0.82304 0.83000 0.92231 0.91759 0.97339 0.97663 0.92597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.72 71.98 0.70 -1.49 16 2 C -0.13 -1.25 5.48 30.59 0.17 -1.08 16 3 C 0.15 2.07 2.79 44.99 0.13 2.20 16 4 C -0.13 -1.15 4.91 30.60 0.15 -1.00 16 5 C -0.15 -0.83 9.53 71.98 0.69 -0.15 16 6 N -0.36 -7.37 3.09 -327.49 -1.01 -8.38 16 7 C 0.06 1.09 10.61 83.54 0.89 1.97 16 8 C -0.28 -6.06 10.74 21.99 0.24 -5.82 16 9 C 0.04 1.12 6.48 43.10 0.28 1.40 16 10 C -0.51 -10.68 6.37 71.24 0.45 -10.22 16 11 S 2.42 73.34 4.70 -56.49 -0.27 73.08 16 12 O -0.98 -38.17 18.10 -127.37 -2.30 -40.48 16 13 O -0.97 -34.99 18.10 -127.37 -2.30 -37.29 16 14 C -0.59 -17.72 5.81 71.98 0.42 -17.30 16 15 C -0.11 -4.53 5.16 30.59 0.16 -4.37 16 16 C 0.03 1.56 4.97 29.85 0.15 1.71 16 17 C -0.55 -32.21 9.11 25.60 0.23 -31.98 16 18 H 0.06 3.24 7.74 -2.91 -0.02 3.21 16 19 C 0.00 0.14 5.46 84.66 0.46 0.60 16 20 N -0.93 -56.09 13.29 21.45 0.28 -55.80 16 21 Si 0.96 45.03 29.54 68.60 2.03 47.05 16 22 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 23 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 24 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 25 N -0.31 -8.67 12.27 -47.38 -0.58 -9.25 16 26 H 0.03 0.64 7.62 -2.39 -0.02 0.62 16 27 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.05 0.79 8.14 -2.38 -0.02 0.78 16 29 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.11 0.56 6.52 -2.39 -0.02 0.54 16 31 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.09 0.46 7.45 -2.39 -0.02 0.44 16 33 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.05 0.39 8.14 -2.38 -0.02 0.37 16 35 H 0.08 0.21 6.79 -2.39 -0.02 0.20 16 36 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 37 H 0.22 1.71 7.42 -2.91 -0.02 1.68 16 38 H 0.17 2.97 8.06 -2.91 -0.02 2.94 16 39 H 0.19 2.32 8.14 -2.39 -0.02 2.30 16 40 H 0.17 2.75 8.14 -2.39 -0.02 2.73 16 41 H 0.16 3.78 8.14 -2.39 -0.02 3.76 16 42 H 0.15 3.83 8.14 -2.39 -0.02 3.81 16 43 H 0.06 2.57 8.14 -2.38 -0.02 2.55 16 44 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 45 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 46 H 0.00 0.27 8.14 -2.39 -0.02 0.25 16 47 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -85.88 399.55 1.87 -84.01 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: 0.92 Total: 12.60 kcal Atomic # 6 Polarization: -70.64 SS G_CDS: 5.10 Total: -65.54 kcal Atomic # 7 Polarization: -72.13 SS G_CDS: -1.31 Total: -73.43 kcal Atomic # 8 Polarization: -73.16 SS G_CDS: -4.61 Total: -77.77 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Atomic # 16 Polarization: 73.34 SS G_CDS: -0.27 Total: 73.08 kcal Total: -85.88 1.87 -84.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269364671.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.980 kcal (2) G-P(sol) polarization free energy of solvation -85.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds