Wall clock time and date at job start Tue Mar 31 2020 15:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 5 5 C 1.41263 * 126.69925 * 274.71229 * 4 2 1 6 6 C 1.36827 * 103.84343 * 179.85714 * 5 4 2 7 7 C 1.47514 * 126.94528 * 180.12689 * 6 5 4 8 8 O 1.21575 * 119.99762 * 0.30043 * 7 6 5 9 9 N 1.34773 * 119.99829 * 180.29790 * 7 6 5 10 10 C 1.46502 * 119.99840 * 180.02562 * 9 7 6 11 11 H 1.08997 * 109.47114 * 34.99799 * 10 9 7 12 12 C 1.53000 * 109.47138 * 155.00368 * 10 9 7 13 13 C 1.50704 * 109.46811 * 294.99344 * 12 10 9 14 14 H 1.08005 * 119.99896 * 0.02562 * 13 12 10 15 15 C 1.37880 * 119.99975 * 179.97438 * 13 12 10 16 16 N 1.31512 * 119.99696 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99898 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47174 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47157 * 120.00573 * 17 15 13 20 20 H 1.48505 * 109.46721 * 240.00478 * 17 15 13 21 21 C 1.50701 * 109.46751 * 274.99920 * 10 9 7 22 22 C 1.38237 * 120.00116 * 319.72170 * 21 10 9 23 23 C 1.38237 * 119.99803 * 179.80724 * 22 21 10 24 24 C 1.38236 * 120.00153 * 0.40848 * 23 22 21 25 25 C 1.38240 * 120.00030 * 359.84705 * 24 23 22 26 26 C 1.38233 * 119.99888 * 140.00089 * 21 10 9 27 27 O 1.34646 * 106.11136 * 0.39687 * 6 5 4 28 28 N 1.20891 * 111.46562 * 359.72972 * 27 6 5 29 29 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 33 33 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 35 35 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 36 36 H 1.07989 * 128.08085 * 359.97438 * 5 4 2 37 37 H 0.97002 * 120.00308 * 0.02562 * 9 7 6 38 38 H 1.08996 * 109.47516 * 54.99547 * 12 10 9 39 39 H 1.09006 * 109.47055 * 174.99892 * 12 10 9 40 40 H 0.97007 * 119.99421 * 179.97438 * 16 15 13 41 41 H 1.07991 * 119.99966 * 0.02562 * 22 21 10 42 42 H 1.07996 * 120.00092 * 180.23585 * 23 22 21 43 43 H 1.07999 * 120.00136 * 179.83450 * 24 23 22 44 44 H 1.07999 * 120.00062 * 179.97438 * 25 24 23 45 45 H 1.08006 * 120.00097 * 359.97438 * 26 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 6 2.2261 -0.1465 2.5110 6 6 2.6844 -1.1931 3.2638 7 6 3.0481 -1.1649 4.6932 8 8 2.9467 -0.1317 5.3259 9 7 3.4928 -2.2844 5.2975 10 6 3.8535 -2.2566 6.7172 11 1 3.1882 -1.5754 7.2478 12 6 3.7187 -3.6626 7.3053 13 6 2.2726 -4.0854 7.2697 14 1 1.5246 -3.4182 6.8674 15 6 1.9046 -5.3244 7.7498 16 7 2.8155 -6.1370 8.2392 17 14 0.1123 -5.8488 7.7050 18 1 -0.7068 -4.7617 7.1114 19 1 -0.0235 -7.0774 6.8821 20 1 -0.3576 -6.1239 9.0866 21 6 5.2771 -1.7848 6.8645 22 6 6.2441 -2.2175 5.9764 23 6 7.5492 -1.7816 6.1092 24 6 7.8890 -0.9197 7.1351 25 6 6.9231 -0.4911 8.0264 26 6 5.6172 -0.9239 7.8912 27 8 2.7421 -2.2526 2.4349 28 7 2.3777 -1.9619 1.3194 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6768 1.9562 0.8900 36 1 2.0512 0.8723 2.8235 37 1 3.5740 -3.1087 4.7926 38 1 4.3159 -4.3606 6.7188 39 1 4.0712 -3.6602 8.3368 40 1 2.5566 -7.0086 8.5773 41 1 5.9792 -2.8933 5.1768 42 1 8.3039 -2.1167 5.4131 43 1 8.9092 -0.5813 7.2405 44 1 7.1887 0.1819 8.8281 45 1 4.8626 -0.5891 8.5875 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269629582.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:54 Heat of formation + Delta-G solvation = 30.995667 kcal Electronic energy + Delta-G solvation = -27456.816238 eV Core-core repulsion = 23634.900018 eV Total energy + Delta-G solvation = -3821.916220 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -44.96130 -39.73785 -38.46747 -36.76099 -35.37861 -32.86447 -32.50474 -32.04988 -30.87083 -30.47285 -28.84193 -27.49251 -25.32969 -24.15699 -23.65382 -22.34405 -21.99535 -21.67017 -20.07456 -19.62093 -18.10888 -17.68320 -16.88948 -16.20594 -16.12226 -15.75902 -14.98686 -14.89555 -14.58321 -14.49991 -14.23742 -14.20458 -13.72075 -13.53671 -13.26493 -13.06547 -12.80654 -12.57800 -12.47644 -12.14282 -11.90483 -11.77902 -11.60768 -11.58703 -11.17331 -11.07583 -10.97814 -10.77689 -10.63343 -10.54619 -10.15709 -9.97003 -9.84405 -9.66011 -9.33259 -8.66987 -8.55081 -8.48429 -8.24534 -6.11477 -4.15300 0.92433 1.72394 1.76534 2.03672 2.78319 3.25897 3.27487 3.34718 3.38895 3.52755 3.86468 4.17841 4.38480 4.42524 4.76499 4.85563 4.90018 5.07643 5.19854 5.22933 5.23664 5.25879 5.31517 5.33083 5.39833 5.49312 5.52043 5.57308 5.68889 5.85919 5.88572 5.89301 5.94125 5.95922 6.08193 6.29355 6.37474 6.49501 6.65582 6.80496 6.81754 7.03417 7.35801 7.44422 7.52025 7.78169 7.84871 8.13566 8.21084 8.38720 8.90398 9.50424 10.98984 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.007892 B = 0.004375 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3546.953827 B = 6398.607336 C = 9187.650015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.016 4.016 3 C -0.146 4.146 4 C 0.015 3.985 5 C -0.159 4.159 6 C -0.067 4.067 7 C 0.598 3.402 8 O -0.521 6.521 9 N -0.681 5.681 10 C 0.184 3.816 11 H 0.092 0.908 12 C 0.023 3.977 13 C -0.523 4.523 14 H 0.059 0.941 15 C 0.062 3.938 16 N -0.890 5.890 17 Si 0.891 3.109 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.283 1.283 21 C -0.075 4.075 22 C -0.108 4.108 23 C -0.124 4.124 24 C -0.133 4.133 25 C -0.123 4.123 26 C -0.106 4.106 27 O 0.118 5.882 28 N -0.348 5.348 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.088 0.912 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.179 0.821 37 H 0.409 0.591 38 H 0.027 0.973 39 H 0.038 0.962 40 H 0.262 0.738 41 H 0.118 0.882 42 H 0.115 0.885 43 H 0.114 0.886 44 H 0.117 0.883 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.279 12.653 -12.225 17.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.035 4.035 3 C -0.204 4.204 4 C -0.143 4.143 5 C -0.182 4.182 6 C -0.133 4.133 7 C 0.381 3.619 8 O -0.398 6.398 9 N -0.329 5.329 10 C 0.080 3.920 11 H 0.110 0.890 12 C -0.014 4.014 13 C -0.561 4.561 14 H 0.077 0.923 15 C -0.140 4.140 16 N -0.529 5.529 17 Si 0.719 3.281 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.076 4.076 22 C -0.126 4.126 23 C -0.142 4.142 24 C -0.151 4.151 25 C -0.141 4.141 26 C -0.125 4.125 27 O 0.046 5.954 28 N -0.049 5.049 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.107 0.893 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.197 0.803 37 H 0.245 0.755 38 H 0.045 0.955 39 H 0.056 0.944 40 H 0.071 0.929 41 H 0.136 0.864 42 H 0.133 0.867 43 H 0.132 0.868 44 H 0.135 0.865 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.264 12.176 -12.531 17.774 hybrid contribution -0.985 -0.198 0.199 1.025 sum 2.279 11.978 -12.332 17.342 Atomic orbital electron populations 1.21839 0.93298 1.02580 1.02545 1.19521 0.96219 0.95413 0.92332 1.21855 1.01548 0.94276 1.02685 1.23571 1.02849 0.90517 0.97360 1.22724 1.02649 1.01353 0.91440 1.24505 1.06252 0.87915 0.94639 1.16573 0.78290 0.84917 0.82162 1.90830 1.54845 1.31240 1.62904 1.45957 1.63247 1.11305 1.12372 1.20400 0.89810 1.02175 0.79583 0.88985 1.19423 0.97918 0.87107 0.96968 1.21162 0.92716 1.00963 1.41309 0.92299 1.24968 0.97379 0.96589 0.95038 1.69964 1.32979 1.08992 1.40947 0.86551 0.85203 0.78615 0.77777 1.19724 1.20946 1.20945 1.20480 0.96557 0.95587 0.94978 1.20941 0.92719 0.99623 0.99320 1.21051 0.96247 0.98449 0.98483 1.21018 0.98927 0.99117 0.96054 1.21050 0.93308 1.00437 0.99278 1.21016 0.96395 0.97076 0.98012 1.85005 1.62091 1.34380 1.13898 1.73717 1.14451 1.16920 0.99800 0.91538 0.91992 0.92259 0.89337 0.92164 0.91526 0.91849 0.80329 0.75543 0.95458 0.94372 0.92858 0.86441 0.86651 0.86778 0.86518 0.86038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.18 37.16 0.34 -0.87 16 2 C -0.02 -0.14 3.38 -91.77 -0.31 -0.46 16 3 C -0.15 -1.08 8.80 37.15 0.33 -0.76 16 4 C 0.02 0.19 6.20 -82.17 -0.51 -0.32 16 5 C -0.16 -2.13 10.12 -38.94 -0.39 -2.52 16 6 C -0.07 -1.04 7.29 -36.31 -0.26 -1.30 16 7 C 0.60 10.57 7.77 -12.48 -0.10 10.48 16 8 O -0.52 -10.39 16.58 5.30 0.09 -10.30 16 9 N -0.68 -12.17 4.04 -55.99 -0.23 -12.40 16 10 C 0.18 3.60 2.11 -69.08 -0.15 3.46 16 11 H 0.09 1.93 7.44 -51.93 -0.39 1.54 16 12 C 0.02 0.54 4.49 -27.88 -0.13 0.41 16 13 C -0.52 -13.62 8.84 -34.44 -0.30 -13.92 16 14 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -25.26 13.29 55.43 0.74 -24.52 16 17 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 18 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 C -0.07 -1.34 4.91 -104.62 -0.51 -1.85 16 22 C -0.11 -1.77 9.32 -39.58 -0.37 -2.14 16 23 C -0.12 -1.80 10.05 -39.58 -0.40 -2.20 16 24 C -0.13 -1.83 10.05 -39.58 -0.40 -2.23 16 25 C -0.12 -1.77 10.05 -39.58 -0.40 -2.17 16 26 C -0.11 -1.77 9.67 -39.58 -0.38 -2.15 16 27 O 0.12 1.83 11.04 15.54 0.17 2.01 16 28 N -0.35 -5.19 12.04 33.52 0.40 -4.79 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.46 7.48 -51.93 -0.39 0.07 16 36 H 0.18 2.07 7.65 -52.49 -0.40 1.67 16 37 H 0.41 6.90 8.43 -40.82 -0.34 6.56 16 38 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 41 H 0.12 1.82 7.73 -52.49 -0.41 1.42 16 42 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 43 H 0.11 1.25 8.06 -52.49 -0.42 0.83 16 44 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 45 H 0.12 1.91 8.04 -52.48 -0.42 1.49 16 LS Contribution 387.67 15.07 5.84 5.84 Total: -1.00 -30.31 387.67 -8.59 -38.89 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -6.54 Total: 6.26 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: -4.04 Total: -16.94 kcal Atomic # 7 Polarization: -42.62 SS G_CDS: 0.91 Total: -41.71 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: 0.26 Total: -8.29 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.31 -8.59 -38.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269629582.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.889 kcal (2) G-P(sol) polarization free energy of solvation -30.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds