Wall clock time and date at job start Tue Mar 31 2020 15:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 5 5 C 1.41263 * 126.69925 * 274.71229 * 4 2 1 6 6 C 1.36827 * 103.84343 * 179.85714 * 5 4 2 7 7 C 1.47514 * 126.94528 * 180.12689 * 6 5 4 8 8 O 1.21575 * 119.99762 * 0.30043 * 7 6 5 9 9 N 1.34773 * 119.99829 * 180.29790 * 7 6 5 10 10 C 1.46502 * 119.99840 * 180.02562 * 9 7 6 11 11 H 1.08997 * 109.47114 * 34.99799 * 10 9 7 12 12 C 1.53000 * 109.47138 * 155.00368 * 10 9 7 13 13 C 1.50704 * 109.46811 * 294.99344 * 12 10 9 14 14 H 1.08005 * 119.99896 * 0.02562 * 13 12 10 15 15 C 1.37880 * 119.99975 * 179.97438 * 13 12 10 16 16 N 1.31512 * 119.99696 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99898 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47174 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47157 * 120.00573 * 17 15 13 20 20 H 1.48505 * 109.46721 * 240.00478 * 17 15 13 21 21 C 1.50701 * 109.46751 * 274.99920 * 10 9 7 22 22 C 1.38237 * 120.00116 * 319.72170 * 21 10 9 23 23 C 1.38237 * 119.99803 * 179.80724 * 22 21 10 24 24 C 1.38236 * 120.00153 * 0.40848 * 23 22 21 25 25 C 1.38240 * 120.00030 * 359.84705 * 24 23 22 26 26 C 1.38233 * 119.99888 * 140.00089 * 21 10 9 27 27 O 1.34646 * 106.11136 * 0.39687 * 6 5 4 28 28 N 1.20891 * 111.46562 * 359.72972 * 27 6 5 29 29 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 33 33 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 35 35 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 36 36 H 1.07989 * 128.08085 * 359.97438 * 5 4 2 37 37 H 0.97002 * 120.00308 * 0.02562 * 9 7 6 38 38 H 1.08996 * 109.47516 * 54.99547 * 12 10 9 39 39 H 1.09006 * 109.47055 * 174.99892 * 12 10 9 40 40 H 0.97007 * 119.99421 * 179.97438 * 16 15 13 41 41 H 1.07991 * 119.99966 * 0.02562 * 22 21 10 42 42 H 1.07996 * 120.00092 * 180.23585 * 23 22 21 43 43 H 1.07999 * 120.00136 * 179.83450 * 24 23 22 44 44 H 1.07999 * 120.00062 * 179.97438 * 25 24 23 45 45 H 1.08006 * 120.00097 * 359.97438 * 26 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 6 2.2261 -0.1465 2.5110 6 6 2.6844 -1.1931 3.2638 7 6 3.0481 -1.1649 4.6932 8 8 2.9467 -0.1317 5.3259 9 7 3.4928 -2.2844 5.2975 10 6 3.8535 -2.2566 6.7172 11 1 3.1882 -1.5754 7.2478 12 6 3.7187 -3.6626 7.3053 13 6 2.2726 -4.0854 7.2697 14 1 1.5246 -3.4182 6.8674 15 6 1.9046 -5.3244 7.7498 16 7 2.8155 -6.1370 8.2392 17 14 0.1123 -5.8488 7.7050 18 1 -0.7068 -4.7617 7.1114 19 1 -0.0235 -7.0774 6.8821 20 1 -0.3576 -6.1239 9.0866 21 6 5.2771 -1.7848 6.8645 22 6 6.2441 -2.2175 5.9764 23 6 7.5492 -1.7816 6.1092 24 6 7.8890 -0.9197 7.1351 25 6 6.9231 -0.4911 8.0264 26 6 5.6172 -0.9239 7.8912 27 8 2.7421 -2.2526 2.4349 28 7 2.3777 -1.9619 1.3194 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6768 1.9562 0.8900 36 1 2.0512 0.8723 2.8235 37 1 3.5740 -3.1087 4.7926 38 1 4.3159 -4.3606 6.7188 39 1 4.0712 -3.6602 8.3368 40 1 2.5566 -7.0086 8.5773 41 1 5.9792 -2.8933 5.1768 42 1 8.3039 -2.1167 5.4131 43 1 8.9092 -0.5813 7.2405 44 1 7.1887 0.1819 8.8281 45 1 4.8626 -0.5891 8.5875 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269629582.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:53 Heat of formation + Delta-G solvation = 15.244911 kcal Electronic energy + Delta-G solvation = -27457.499242 eV Core-core repulsion = 23634.900018 eV Total energy + Delta-G solvation = -3822.599224 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -46.08560 -41.16127 -39.75874 -37.61625 -36.92175 -34.79974 -33.58807 -33.28412 -32.14355 -31.67416 -30.54894 -28.10776 -27.01878 -25.12159 -25.05948 -23.81220 -23.34703 -22.72382 -21.45090 -20.86237 -19.30858 -18.84792 -18.61258 -17.73093 -17.31522 -17.17318 -16.52627 -16.29115 -15.92059 -15.58691 -15.35306 -15.28736 -14.89372 -14.62554 -14.48983 -14.18830 -14.17310 -14.12479 -13.69669 -13.48458 -13.06303 -12.94930 -12.85098 -12.64481 -12.51633 -12.49575 -12.27015 -12.16261 -11.89396 -11.82025 -11.63029 -11.47514 -11.32576 -11.16706 -10.86876 -10.59811 -10.16382 -9.75391 -9.54087 -8.21242 -6.30982 -0.30893 0.49581 0.56366 0.98158 1.37615 1.40334 1.51119 1.52366 1.89798 2.20372 2.39170 2.92418 2.96520 3.13418 3.39258 3.83135 3.90271 3.96326 4.02991 4.08274 4.13149 4.21372 4.24542 4.33085 4.40536 4.48831 4.62880 4.73967 4.78032 4.78149 4.83526 4.91846 4.94779 5.06990 5.12770 5.14735 5.20899 5.30316 5.35463 5.41587 5.54118 5.61394 5.64961 5.76967 5.83604 6.14484 6.19392 6.34436 6.81764 6.90010 7.01041 7.38097 8.89626 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.007892 B = 0.004375 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3546.953827 B = 6398.607336 C = 9187.650015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.017 4.017 3 C -0.143 4.143 4 C 0.026 3.974 5 C -0.145 4.145 6 C -0.085 4.085 7 C 0.603 3.397 8 O -0.547 6.547 9 N -0.680 5.680 10 C 0.200 3.800 11 H 0.072 0.928 12 C 0.037 3.963 13 C -0.531 4.531 14 H 0.054 0.946 15 C 0.013 3.987 16 N -0.924 5.924 17 Si 0.953 3.047 18 H -0.270 1.270 19 H -0.278 1.278 20 H -0.279 1.279 21 C -0.100 4.100 22 C -0.123 4.123 23 C -0.126 4.126 24 C -0.127 4.127 25 C -0.122 4.122 26 C -0.128 4.128 27 O 0.102 5.898 28 N -0.365 5.365 29 H 0.091 0.909 30 H 0.060 0.940 31 H 0.044 0.956 32 H 0.094 0.906 33 H 0.055 0.945 34 H 0.089 0.911 35 H 0.065 0.935 36 H 0.199 0.801 37 H 0.412 0.588 38 H 0.013 0.987 39 H 0.012 0.988 40 H 0.264 0.736 41 H 0.117 0.883 42 H 0.144 0.856 43 H 0.151 0.849 44 H 0.146 0.854 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.616 14.322 -13.755 20.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.036 4.036 3 C -0.201 4.201 4 C -0.132 4.132 5 C -0.167 4.167 6 C -0.151 4.151 7 C 0.387 3.613 8 O -0.426 6.426 9 N -0.328 5.328 10 C 0.096 3.904 11 H 0.090 0.910 12 C -0.001 4.001 13 C -0.569 4.569 14 H 0.073 0.927 15 C -0.186 4.186 16 N -0.564 5.564 17 Si 0.778 3.222 18 H -0.194 1.194 19 H -0.204 1.204 20 H -0.205 1.205 21 C -0.101 4.101 22 C -0.142 4.142 23 C -0.144 4.144 24 C -0.145 4.145 25 C -0.140 4.140 26 C -0.146 4.146 27 O 0.033 5.967 28 N -0.069 5.069 29 H 0.110 0.890 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.112 0.888 33 H 0.074 0.926 34 H 0.107 0.893 35 H 0.084 0.916 36 H 0.216 0.784 37 H 0.248 0.752 38 H 0.031 0.969 39 H 0.030 0.970 40 H 0.073 0.927 41 H 0.135 0.865 42 H 0.161 0.839 43 H 0.169 0.831 44 H 0.164 0.836 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.608 13.837 -14.054 20.050 hybrid contribution -1.044 -0.658 0.624 1.383 sum 2.564 13.179 -13.430 18.990 Atomic orbital electron populations 1.21845 0.92367 1.02064 1.03782 1.19761 0.96883 0.96280 0.90719 1.21868 1.01312 0.92928 1.03998 1.24182 1.01036 0.89730 0.98263 1.23059 1.00712 1.01613 0.91276 1.24172 1.08159 0.88991 0.93805 1.16698 0.77464 0.84199 0.82978 1.90802 1.55970 1.31925 1.63921 1.45856 1.63423 1.11795 1.11727 1.19918 0.91271 0.99130 0.80129 0.90983 1.19158 0.96233 0.89249 0.95445 1.21445 0.93864 1.00917 1.40665 0.92744 1.25728 1.01255 0.96753 0.94819 1.70068 1.34872 1.09431 1.42012 0.85582 0.80496 0.78227 0.77856 1.19432 1.20364 1.20502 1.20360 0.95558 0.97483 0.96705 1.21075 0.93675 1.00139 0.99285 1.21418 0.95770 0.98007 0.99158 1.21483 1.00455 0.97751 0.94792 1.21411 0.92272 1.00247 1.00080 1.21196 0.97868 0.97638 0.97932 1.84995 1.63005 1.34549 1.14150 1.73717 1.15421 1.18213 0.99544 0.88999 0.92108 0.93649 0.88770 0.92564 0.89252 0.91575 0.78438 0.75189 0.96909 0.97003 0.92704 0.86514 0.83856 0.83114 0.83601 0.86292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.18 71.98 0.66 -1.39 16 2 C -0.02 -0.28 3.38 -11.54 -0.04 -0.32 16 3 C -0.14 -1.72 8.80 71.98 0.63 -1.09 16 4 C 0.03 0.64 6.20 43.56 0.27 0.91 16 5 C -0.14 -3.73 10.12 22.68 0.23 -3.50 16 6 C -0.09 -2.68 7.29 24.39 0.18 -2.50 16 7 C 0.60 21.99 7.77 86.69 0.67 22.66 16 8 O -0.55 -22.39 16.58 -3.95 -0.07 -22.45 16 9 N -0.68 -25.55 4.04 -449.31 -1.81 -27.36 16 10 C 0.20 8.28 2.11 44.24 0.09 8.37 16 11 H 0.07 3.23 7.44 -2.39 -0.02 3.21 16 12 C 0.04 1.80 4.49 29.85 0.13 1.94 16 13 C -0.53 -28.62 8.84 25.60 0.23 -28.39 16 14 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 15 C 0.01 0.74 5.46 84.66 0.46 1.20 16 16 N -0.92 -53.76 13.29 21.45 0.28 -53.47 16 17 Si 0.95 43.68 29.54 68.60 2.03 45.70 16 18 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 19 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 20 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 21 C -0.10 -3.70 4.91 -19.87 -0.10 -3.80 16 22 C -0.12 -4.09 9.32 22.27 0.21 -3.88 16 23 C -0.13 -3.41 10.05 22.27 0.22 -3.19 16 24 C -0.13 -3.14 10.05 22.27 0.22 -2.91 16 25 C -0.12 -3.32 10.05 22.27 0.22 -3.10 16 26 C -0.13 -4.32 9.67 22.27 0.22 -4.10 16 27 O 0.10 3.22 11.04 65.78 0.73 3.94 16 28 N -0.37 -10.78 12.04 -48.87 -0.59 -11.37 16 29 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.04 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.07 0.77 7.48 -2.39 -0.02 0.75 16 36 H 0.20 4.24 7.65 -2.92 -0.02 4.22 16 37 H 0.41 14.76 8.43 -92.71 -0.78 13.98 16 38 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.01 0.63 8.14 -2.38 -0.02 0.62 16 40 H 0.26 14.52 8.31 -92.70 -0.77 13.75 16 41 H 0.12 3.74 7.73 -2.92 -0.02 3.72 16 42 H 0.14 3.03 8.06 -2.91 -0.02 3.00 16 43 H 0.15 2.63 8.06 -2.91 -0.02 2.60 16 44 H 0.15 3.04 8.06 -2.91 -0.02 3.01 16 45 H 0.12 3.92 8.04 -2.91 -0.02 3.89 16 Total: -1.00 -66.82 387.67 5.31 -61.51 By element: Atomic # 1 Polarization: 26.38 SS G_CDS: 0.22 Total: 26.60 kcal Atomic # 6 Polarization: -27.62 SS G_CDS: 4.52 Total: -23.10 kcal Atomic # 7 Polarization: -90.08 SS G_CDS: -2.12 Total: -92.20 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: 0.66 Total: -18.51 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Total: -66.82 5.31 -61.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269629582.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.759 kcal (2) G-P(sol) polarization free energy of solvation -66.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds