Wall clock time and date at job start Tue Mar 31 2020 15:09:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.50697 * 109.47239 * 119.99965 * 2 1 3 5 5 C 1.41261 * 126.70803 * 274.71754 * 4 2 1 6 6 C 1.36822 * 103.84811 * 179.85802 * 5 4 2 7 7 C 1.47503 * 126.94768 * 180.12621 * 6 5 4 8 8 O 1.21582 * 119.99848 * 0.29754 * 7 6 5 9 9 N 1.34781 * 120.00352 * 180.30036 * 7 6 5 10 10 C 1.46502 * 120.00126 * 179.97438 * 9 7 6 11 11 H 1.08999 * 109.46925 * 325.00207 * 10 9 7 12 12 C 1.52990 * 109.47170 * 204.99828 * 10 9 7 13 13 C 1.50700 * 109.47405 * 65.00142 * 12 10 9 14 14 H 1.08004 * 119.99717 * 359.97438 * 13 12 10 15 15 C 1.37876 * 120.00202 * 180.02562 * 13 12 10 16 16 N 1.31512 * 120.00177 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99861 * 179.97438 * 15 13 12 18 18 H 1.48510 * 109.47043 * 59.99998 * 17 15 13 19 19 H 1.48503 * 109.47257 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47359 * 299.99783 * 17 15 13 21 21 C 1.50707 * 109.47002 * 84.99719 * 10 9 7 22 22 C 1.38233 * 119.99599 * 39.72802 * 21 10 9 23 23 C 1.38240 * 119.99606 * 179.78861 * 22 21 10 24 24 C 1.38241 * 119.99582 * 0.43796 * 23 22 21 25 25 C 1.38232 * 120.00150 * 359.81537 * 24 23 22 26 26 C 1.38225 * 120.00433 * 359.97438 * 25 24 23 27 27 O 1.34650 * 106.10899 * 0.39346 * 6 5 4 28 28 N 1.20887 * 111.46829 * 359.73459 * 27 6 5 29 29 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 30 30 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 32 32 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 33 33 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 34 34 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 35 35 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 36 36 H 1.08000 * 128.07471 * 359.97438 * 5 4 2 37 37 H 0.96990 * 119.99880 * 359.97438 * 9 7 6 38 38 H 1.09002 * 109.47311 * 184.99949 * 12 10 9 39 39 H 1.08995 * 109.47390 * 305.00002 * 12 10 9 40 40 H 0.96999 * 120.00118 * 180.02562 * 16 15 13 41 41 H 1.07992 * 120.00178 * 359.97438 * 22 21 10 42 42 H 1.07995 * 120.00205 * 180.27910 * 23 22 21 43 43 H 1.08003 * 119.99687 * 179.83758 * 24 23 22 44 44 H 1.08006 * 119.99488 * 179.97438 * 25 24 23 45 45 H 1.07996 * 120.00455 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.2261 -0.1465 2.5111 6 6 2.6845 -1.1931 3.2638 7 6 3.0482 -1.1649 4.6930 8 8 2.9468 -0.1318 5.3258 9 7 3.4929 -2.2845 5.2974 10 6 3.8547 -2.2564 6.7168 11 1 4.2972 -1.2904 6.9599 12 6 4.8649 -3.3679 7.0077 13 6 6.1459 -3.0897 6.2643 14 1 6.2308 -2.2084 5.6458 15 6 7.2091 -3.9608 6.3729 16 7 7.1056 -5.0342 7.1257 17 14 8.7967 -3.6163 5.4508 18 1 9.3539 -2.3130 5.8942 19 1 9.7774 -4.6951 5.7333 20 1 8.5214 -3.5665 3.9924 21 6 2.6197 -2.4681 7.5542 22 6 1.6647 -3.3853 7.1576 23 6 0.5339 -3.5827 7.9280 24 6 0.3541 -2.8562 9.0903 25 6 1.3067 -1.9352 9.4841 26 6 2.4394 -1.7410 8.7161 27 8 2.7422 -2.2525 2.4347 28 7 2.3779 -1.9618 1.3193 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 2.0511 0.8724 2.8235 37 1 3.5735 -3.1088 4.7927 38 1 5.0667 -3.4044 8.0783 39 1 4.4564 -4.3245 6.6823 40 1 7.8537 -5.6468 7.2024 41 1 1.8033 -3.9499 6.2475 42 1 -0.2101 -4.3026 7.6205 43 1 -0.5305 -3.0085 9.6908 44 1 1.1659 -1.3674 10.3920 45 1 3.1835 -1.0212 9.0235 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269629583.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:57 Heat of formation + Delta-G solvation = 31.125264 kcal Electronic energy + Delta-G solvation = -27458.818116 eV Core-core repulsion = 23636.907516 eV Total energy + Delta-G solvation = -3821.910600 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.96194 -39.73854 -38.46659 -36.76266 -35.37834 -32.86301 -32.50656 -32.04929 -30.86990 -30.47221 -28.84330 -27.49822 -25.32803 -24.15926 -23.65420 -22.34004 -21.99634 -21.67042 -20.07401 -19.62075 -18.11518 -17.67537 -16.88804 -16.20346 -16.12606 -15.76421 -14.95984 -14.91065 -14.58531 -14.50656 -14.25713 -14.19196 -13.72069 -13.54322 -13.26314 -13.06499 -12.80308 -12.57947 -12.48419 -12.13449 -11.90752 -11.77674 -11.60612 -11.59279 -11.17616 -11.07355 -10.97149 -10.75228 -10.67105 -10.54243 -10.15789 -9.96858 -9.83846 -9.66052 -9.35889 -8.67036 -8.55061 -8.47546 -8.24479 -6.10926 -4.15037 0.92370 1.72459 1.76559 2.03616 2.78302 3.27055 3.29136 3.33844 3.36787 3.52681 3.86467 4.17866 4.38637 4.42435 4.76014 4.85852 4.89482 5.07684 5.19391 5.22887 5.23680 5.26146 5.31068 5.32784 5.39809 5.49348 5.51117 5.57433 5.68664 5.85973 5.88397 5.89090 5.93344 5.95495 6.08253 6.29338 6.37491 6.49590 6.65534 6.80526 6.81793 7.03487 7.35826 7.44329 7.52212 7.78164 7.84940 8.13566 8.21330 8.38665 8.90122 9.50567 10.99467 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.007978 B = 0.004321 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3508.994004 B = 6478.922232 C = 9157.605025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.016 4.016 3 C -0.146 4.146 4 C 0.015 3.985 5 C -0.159 4.159 6 C -0.067 4.067 7 C 0.598 3.402 8 O -0.521 6.521 9 N -0.681 5.681 10 C 0.184 3.816 11 H 0.092 0.908 12 C 0.024 3.976 13 C -0.525 4.525 14 H 0.058 0.942 15 C 0.063 3.937 16 N -0.891 5.891 17 Si 0.891 3.109 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 C -0.075 4.075 22 C -0.108 4.108 23 C -0.124 4.124 24 C -0.133 4.133 25 C -0.123 4.123 26 C -0.106 4.106 27 O 0.119 5.881 28 N -0.348 5.348 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.089 0.911 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.179 0.821 37 H 0.409 0.591 38 H 0.038 0.962 39 H 0.027 0.973 40 H 0.263 0.737 41 H 0.117 0.883 42 H 0.115 0.885 43 H 0.114 0.886 44 H 0.117 0.883 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.175 8.147 -7.688 18.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.035 4.035 3 C -0.204 4.204 4 C -0.143 4.143 5 C -0.182 4.182 6 C -0.133 4.133 7 C 0.381 3.619 8 O -0.398 6.398 9 N -0.329 5.329 10 C 0.080 3.920 11 H 0.110 0.890 12 C -0.013 4.013 13 C -0.563 4.563 14 H 0.076 0.924 15 C -0.139 4.139 16 N -0.529 5.529 17 Si 0.719 3.281 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.202 1.202 21 C -0.076 4.076 22 C -0.126 4.126 23 C -0.142 4.142 24 C -0.151 4.151 25 C -0.141 4.141 26 C -0.125 4.125 27 O 0.046 5.954 28 N -0.049 5.049 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.107 0.893 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.197 0.803 37 H 0.245 0.755 38 H 0.056 0.944 39 H 0.045 0.955 40 H 0.073 0.927 41 H 0.136 0.864 42 H 0.133 0.867 43 H 0.132 0.868 44 H 0.135 0.865 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -14.079 7.689 -8.017 17.934 hybrid contribution 0.940 0.320 -0.317 1.043 sum -13.139 8.009 -8.334 17.500 Atomic orbital electron populations 1.21833 0.93345 1.02464 1.02519 1.19524 0.96153 0.95470 0.92372 1.21859 1.01681 0.94225 1.02650 1.23568 1.02829 0.90561 0.97341 1.22723 1.02683 1.01292 0.91454 1.24501 1.06073 0.88087 0.94659 1.16576 0.78380 0.84909 0.82086 1.90831 1.54747 1.31206 1.63036 1.45959 1.62968 1.11645 1.12311 1.20402 0.91416 1.03636 0.76521 0.88983 1.19407 0.91813 0.91648 0.98470 1.21084 0.97655 1.08621 1.28949 0.92411 1.24962 0.98717 0.94979 0.95255 1.69939 1.31953 1.12400 1.38616 0.86665 0.83141 0.77938 0.80350 1.20177 1.21246 1.20181 1.20482 0.96115 0.95233 0.95757 1.20940 0.93947 0.97934 0.99805 1.21052 0.97830 0.99843 0.95491 1.21017 0.99272 0.97595 0.97239 1.21045 0.94602 0.98789 0.99625 1.21011 0.97485 0.99221 0.94782 1.85005 1.62055 1.34431 1.13877 1.73720 1.14346 1.17071 0.99743 0.91540 0.92333 0.92043 0.89310 0.92081 0.91532 0.91855 0.80324 0.75542 0.94379 0.95471 0.92735 0.86450 0.86652 0.86778 0.86520 0.86037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 9.18 37.16 0.34 -0.80 16 2 C -0.02 -0.15 3.38 -91.77 -0.31 -0.46 16 3 C -0.15 -1.12 8.81 37.16 0.33 -0.80 16 4 C 0.01 0.19 6.20 -82.17 -0.51 -0.32 16 5 C -0.16 -2.13 10.12 -38.95 -0.39 -2.52 16 6 C -0.07 -1.04 7.29 -36.32 -0.26 -1.30 16 7 C 0.60 10.57 7.77 -12.48 -0.10 10.47 16 8 O -0.52 -10.38 16.58 5.29 0.09 -10.29 16 9 N -0.68 -12.18 4.02 -55.99 -0.22 -12.40 16 10 C 0.18 3.60 2.12 -69.08 -0.15 3.46 16 11 H 0.09 1.93 7.44 -51.93 -0.39 1.55 16 12 C 0.02 0.56 4.50 -27.89 -0.13 0.43 16 13 C -0.53 -13.67 8.84 -34.44 -0.30 -13.98 16 14 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 15 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -25.29 13.29 55.43 0.74 -24.56 16 17 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 21 C -0.07 -1.34 4.92 -104.62 -0.51 -1.85 16 22 C -0.11 -1.77 9.33 -39.58 -0.37 -2.14 16 23 C -0.12 -1.80 10.05 -39.58 -0.40 -2.19 16 24 C -0.13 -1.83 10.05 -39.58 -0.40 -2.23 16 25 C -0.12 -1.77 10.05 -39.59 -0.40 -2.17 16 26 C -0.11 -1.77 9.67 -39.59 -0.38 -2.15 16 27 O 0.12 1.84 11.04 15.53 0.17 2.01 16 28 N -0.35 -5.20 12.04 33.52 0.40 -4.80 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.47 7.48 -51.93 -0.39 0.08 16 36 H 0.18 2.07 7.65 -52.49 -0.40 1.67 16 37 H 0.41 6.92 8.43 -40.82 -0.34 6.57 16 38 H 0.04 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 41 H 0.12 1.82 7.71 -52.49 -0.40 1.42 16 42 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 43 H 0.11 1.25 8.06 -52.48 -0.42 0.83 16 44 H 0.12 1.38 8.06 -52.48 -0.42 0.95 16 45 H 0.12 1.91 8.04 -52.49 -0.42 1.49 16 LS Contribution 387.64 15.07 5.84 5.84 Total: -1.00 -30.26 387.64 -8.58 -38.85 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -6.54 Total: 6.32 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: -4.04 Total: -16.94 kcal Atomic # 7 Polarization: -42.67 SS G_CDS: 0.92 Total: -41.76 kcal Atomic # 8 Polarization: -8.54 SS G_CDS: 0.26 Total: -8.28 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.26 -8.58 -38.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269629583.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.971 kcal (2) G-P(sol) polarization free energy of solvation -30.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.846 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds