Wall clock time and date at job start Tue Mar 31 2020 15:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.50697 * 109.47239 * 119.99965 * 2 1 3 5 5 C 1.41261 * 126.70803 * 274.71754 * 4 2 1 6 6 C 1.36822 * 103.84811 * 179.85802 * 5 4 2 7 7 C 1.47503 * 126.94768 * 180.12621 * 6 5 4 8 8 O 1.21582 * 119.99848 * 0.29754 * 7 6 5 9 9 N 1.34781 * 120.00352 * 180.30036 * 7 6 5 10 10 C 1.46502 * 120.00126 * 179.97438 * 9 7 6 11 11 H 1.08999 * 109.46925 * 325.00207 * 10 9 7 12 12 C 1.52990 * 109.47170 * 204.99828 * 10 9 7 13 13 C 1.50700 * 109.47405 * 65.00142 * 12 10 9 14 14 H 1.08004 * 119.99717 * 359.97438 * 13 12 10 15 15 C 1.37876 * 120.00202 * 180.02562 * 13 12 10 16 16 N 1.31512 * 120.00177 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99861 * 179.97438 * 15 13 12 18 18 H 1.48510 * 109.47043 * 59.99998 * 17 15 13 19 19 H 1.48503 * 109.47257 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47359 * 299.99783 * 17 15 13 21 21 C 1.50707 * 109.47002 * 84.99719 * 10 9 7 22 22 C 1.38233 * 119.99599 * 39.72802 * 21 10 9 23 23 C 1.38240 * 119.99606 * 179.78861 * 22 21 10 24 24 C 1.38241 * 119.99582 * 0.43796 * 23 22 21 25 25 C 1.38232 * 120.00150 * 359.81537 * 24 23 22 26 26 C 1.38225 * 120.00433 * 359.97438 * 25 24 23 27 27 O 1.34650 * 106.10899 * 0.39346 * 6 5 4 28 28 N 1.20887 * 111.46829 * 359.73459 * 27 6 5 29 29 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 30 30 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 32 32 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 33 33 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 34 34 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 35 35 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 36 36 H 1.08000 * 128.07471 * 359.97438 * 5 4 2 37 37 H 0.96990 * 119.99880 * 359.97438 * 9 7 6 38 38 H 1.09002 * 109.47311 * 184.99949 * 12 10 9 39 39 H 1.08995 * 109.47390 * 305.00002 * 12 10 9 40 40 H 0.96999 * 120.00118 * 180.02562 * 16 15 13 41 41 H 1.07992 * 120.00178 * 359.97438 * 22 21 10 42 42 H 1.07995 * 120.00205 * 180.27910 * 23 22 21 43 43 H 1.08003 * 119.99687 * 179.83758 * 24 23 22 44 44 H 1.08006 * 119.99488 * 179.97438 * 25 24 23 45 45 H 1.07996 * 120.00455 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.2261 -0.1465 2.5111 6 6 2.6845 -1.1931 3.2638 7 6 3.0482 -1.1649 4.6930 8 8 2.9468 -0.1318 5.3258 9 7 3.4929 -2.2845 5.2974 10 6 3.8547 -2.2564 6.7168 11 1 4.2972 -1.2904 6.9599 12 6 4.8649 -3.3679 7.0077 13 6 6.1459 -3.0897 6.2643 14 1 6.2308 -2.2084 5.6458 15 6 7.2091 -3.9608 6.3729 16 7 7.1056 -5.0342 7.1257 17 14 8.7967 -3.6163 5.4508 18 1 9.3539 -2.3130 5.8942 19 1 9.7774 -4.6951 5.7333 20 1 8.5214 -3.5665 3.9924 21 6 2.6197 -2.4681 7.5542 22 6 1.6647 -3.3853 7.1576 23 6 0.5339 -3.5827 7.9280 24 6 0.3541 -2.8562 9.0903 25 6 1.3067 -1.9352 9.4841 26 6 2.4394 -1.7410 8.7161 27 8 2.7422 -2.2525 2.4347 28 7 2.3779 -1.9618 1.3193 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 2.0511 0.8724 2.8235 37 1 3.5735 -3.1088 4.7927 38 1 5.0667 -3.4044 8.0783 39 1 4.4564 -4.3245 6.6823 40 1 7.8537 -5.6468 7.2024 41 1 1.8033 -3.9499 6.2475 42 1 -0.2101 -4.3026 7.6205 43 1 -0.5305 -3.0085 9.6908 44 1 1.1659 -1.3674 10.3920 45 1 3.1835 -1.0212 9.0235 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269629583.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:56 Heat of formation + Delta-G solvation = 15.422209 kcal Electronic energy + Delta-G solvation = -27459.499051 eV Core-core repulsion = 23636.907516 eV Total energy + Delta-G solvation = -3822.591536 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -46.08674 -41.16170 -39.75784 -37.61613 -36.92137 -34.79858 -33.58831 -33.28313 -32.14310 -31.67408 -30.55070 -28.10493 -27.01712 -25.12178 -25.05966 -23.80841 -23.34872 -22.72395 -21.45053 -20.86158 -19.31609 -18.83191 -18.61637 -17.72969 -17.31275 -17.18172 -16.52735 -16.28765 -15.91445 -15.59014 -15.36347 -15.28332 -14.89193 -14.62583 -14.46832 -14.19303 -14.18447 -14.11511 -13.69096 -13.48562 -13.05830 -12.94473 -12.85015 -12.64926 -12.51682 -12.47808 -12.27074 -12.17319 -11.89315 -11.81876 -11.62423 -11.47614 -11.35245 -11.16596 -10.86914 -10.58835 -10.16475 -9.75449 -9.54038 -8.20795 -6.30845 -0.30955 0.49604 0.56354 0.98164 1.40320 1.40650 1.48714 1.52323 1.89777 2.20272 2.39427 2.92362 2.96519 3.13683 3.39103 3.83067 3.90206 3.96347 4.02987 4.08342 4.13303 4.21294 4.24870 4.33070 4.40541 4.48703 4.62795 4.74012 4.78133 4.78424 4.83891 4.92266 4.94341 5.06969 5.12909 5.14690 5.20878 5.30979 5.34889 5.41335 5.54133 5.61354 5.64955 5.76854 5.83623 6.14559 6.19381 6.34389 6.81497 6.89939 7.01019 7.38149 8.89693 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.007978 B = 0.004321 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3508.994004 B = 6478.922232 C = 9157.605025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.018 4.018 3 C -0.145 4.145 4 C 0.026 3.974 5 C -0.144 4.144 6 C -0.085 4.085 7 C 0.603 3.397 8 O -0.547 6.547 9 N -0.680 5.680 10 C 0.200 3.800 11 H 0.072 0.928 12 C 0.037 3.963 13 C -0.533 4.533 14 H 0.055 0.945 15 C 0.014 3.986 16 N -0.924 5.924 17 Si 0.952 3.048 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.271 1.271 21 C -0.100 4.100 22 C -0.124 4.124 23 C -0.126 4.126 24 C -0.127 4.127 25 C -0.122 4.122 26 C -0.128 4.128 27 O 0.102 5.898 28 N -0.366 5.366 29 H 0.090 0.910 30 H 0.047 0.953 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.052 0.948 34 H 0.089 0.911 35 H 0.067 0.933 36 H 0.199 0.801 37 H 0.412 0.588 38 H 0.011 0.989 39 H 0.012 0.988 40 H 0.264 0.736 41 H 0.117 0.883 42 H 0.144 0.856 43 H 0.151 0.849 44 H 0.146 0.854 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.907 9.325 -8.694 20.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.037 4.037 3 C -0.202 4.202 4 C -0.132 4.132 5 C -0.166 4.166 6 C -0.151 4.151 7 C 0.387 3.613 8 O -0.426 6.426 9 N -0.328 5.328 10 C 0.096 3.904 11 H 0.090 0.910 12 C 0.000 4.000 13 C -0.571 4.571 14 H 0.073 0.927 15 C -0.185 4.185 16 N -0.564 5.564 17 Si 0.777 3.223 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.196 1.196 21 C -0.101 4.101 22 C -0.142 4.142 23 C -0.143 4.143 24 C -0.145 4.145 25 C -0.140 4.140 26 C -0.146 4.146 27 O 0.033 5.967 28 N -0.069 5.069 29 H 0.109 0.891 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.110 0.890 33 H 0.071 0.929 34 H 0.108 0.892 35 H 0.086 0.914 36 H 0.216 0.784 37 H 0.248 0.752 38 H 0.030 0.970 39 H 0.031 0.969 40 H 0.073 0.927 41 H 0.135 0.865 42 H 0.161 0.839 43 H 0.169 0.831 44 H 0.164 0.836 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -15.810 8.859 -9.017 20.242 hybrid contribution 1.389 -0.020 -0.019 1.389 sum -14.421 8.839 -9.036 19.177 Atomic orbital electron populations 1.21831 0.92004 1.02184 1.03818 1.19765 0.97163 0.96121 0.90669 1.21877 1.01167 0.93116 1.04062 1.24179 1.01007 0.89771 0.98242 1.23058 1.00751 1.01549 0.91286 1.24169 1.07966 0.89161 0.93827 1.16697 0.77607 0.84147 0.82881 1.90804 1.55898 1.31869 1.64029 1.45856 1.63080 1.12107 1.11761 1.19919 0.91792 1.00788 0.77949 0.90965 1.19143 0.92129 0.92399 0.96346 1.21392 0.98770 1.08257 1.28699 0.92712 1.25728 1.01872 0.94827 0.96085 1.70050 1.32921 1.13345 1.40072 0.85701 0.79431 0.77861 0.79269 1.19729 1.20785 1.19566 1.20363 0.96019 0.97207 0.96510 1.21075 0.94694 0.97955 1.00476 1.21420 0.97412 1.00151 0.95359 1.21481 0.99967 0.96148 0.96889 1.21406 0.93582 0.98906 1.00100 1.21192 0.98800 0.99626 0.95012 1.84995 1.62981 1.34608 1.14134 1.73720 1.15326 1.18382 0.99488 0.89095 0.93409 0.91933 0.88956 0.92917 0.89222 0.91427 0.78422 0.75203 0.97025 0.96947 0.92683 0.86523 0.83858 0.83115 0.83603 0.86294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.18 71.98 0.66 -1.21 16 2 C -0.02 -0.29 3.38 -11.54 -0.04 -0.33 16 3 C -0.14 -1.82 8.81 71.98 0.63 -1.19 16 4 C 0.03 0.64 6.20 43.55 0.27 0.91 16 5 C -0.14 -3.73 10.12 22.68 0.23 -3.50 16 6 C -0.09 -2.67 7.29 24.38 0.18 -2.50 16 7 C 0.60 21.96 7.77 86.69 0.67 22.63 16 8 O -0.55 -22.34 16.58 -3.97 -0.07 -22.41 16 9 N -0.68 -25.54 4.02 -449.31 -1.80 -27.35 16 10 C 0.20 8.28 2.12 44.24 0.09 8.38 16 11 H 0.07 3.24 7.44 -2.39 -0.02 3.22 16 12 C 0.04 1.84 4.50 29.84 0.13 1.97 16 13 C -0.53 -28.75 8.84 25.60 0.23 -28.53 16 14 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 15 C 0.01 0.77 5.46 84.65 0.46 1.23 16 16 N -0.92 -53.87 13.29 21.45 0.28 -53.58 16 17 Si 0.95 43.61 29.54 68.60 2.03 45.64 16 18 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 19 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 20 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 21 C -0.10 -3.70 4.92 -19.86 -0.10 -3.80 16 22 C -0.12 -4.10 9.33 22.27 0.21 -3.89 16 23 C -0.13 -3.41 10.05 22.27 0.22 -3.19 16 24 C -0.13 -3.14 10.05 22.27 0.22 -2.92 16 25 C -0.12 -3.32 10.05 22.27 0.22 -3.10 16 26 C -0.13 -4.32 9.67 22.27 0.22 -4.10 16 27 O 0.10 3.22 11.04 65.75 0.73 3.94 16 28 N -0.37 -10.80 12.04 -48.87 -0.59 -11.39 16 29 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.09 0.74 8.14 -2.39 -0.02 0.73 16 35 H 0.07 0.80 7.48 -2.39 -0.02 0.79 16 36 H 0.20 4.23 7.65 -2.91 -0.02 4.21 16 37 H 0.41 14.78 8.43 -92.72 -0.78 13.99 16 38 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 41 H 0.12 3.74 7.71 -2.91 -0.02 3.72 16 42 H 0.14 3.03 8.06 -2.91 -0.02 3.00 16 43 H 0.15 2.63 8.06 -2.91 -0.02 2.60 16 44 H 0.15 3.04 8.06 -2.91 -0.02 3.01 16 45 H 0.12 3.92 8.04 -2.91 -0.02 3.89 16 Total: -1.00 -66.75 387.64 5.31 -61.43 By element: Atomic # 1 Polarization: 26.62 SS G_CDS: 0.22 Total: 26.84 kcal Atomic # 6 Polarization: -27.64 SS G_CDS: 4.52 Total: -23.12 kcal Atomic # 7 Polarization: -90.21 SS G_CDS: -2.11 Total: -92.32 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: 0.66 Total: -18.46 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -66.75 5.31 -61.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269629583.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.854 kcal (2) G-P(sol) polarization free energy of solvation -66.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds