Wall clock time and date at job start Tue Mar 31 2020 14:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50704 * 109.47119 * 2 1 4 4 N 1.30166 * 126.80129 * 270.02260 * 3 2 1 5 5 O 1.20927 * 111.60287 * 179.97438 * 4 3 2 6 6 C 1.34035 * 111.56693 * 359.76134 * 5 4 3 7 7 C 1.50703 * 126.77555 * 180.28294 * 6 5 4 8 8 C 1.52995 * 109.47633 * 270.11309 * 7 6 5 9 9 C 1.35444 * 106.44772 * 0.38304 * 6 5 4 10 10 C 1.50699 * 128.01084 * 179.91023 * 9 6 5 11 11 N 1.46498 * 109.47253 * 269.68114 * 10 9 6 12 12 C 1.34783 * 119.99819 * 179.97438 * 11 10 9 13 13 O 1.21586 * 120.00186 * 359.97438 * 12 11 10 14 14 C 1.47642 * 119.99765 * 179.71985 * 12 11 10 15 15 C 1.40015 * 119.89395 * 0.02562 * 14 12 11 16 16 C 1.36321 * 120.10544 * 179.71765 * 15 14 12 17 17 C 1.40895 * 119.88932 * 0.55022 * 16 15 14 18 18 C 1.41108 * 120.10152 * 179.69677 * 17 16 15 19 19 H 1.07992 * 119.99872 * 204.66399 * 18 17 16 20 20 C 1.40225 * 120.00051 * 24.66454 * 18 17 16 21 21 N 1.30654 * 119.99982 * 17.86632 * 20 18 17 22 22 Si 1.86795 * 120.00136 * 197.86918 * 20 18 17 23 23 H 1.48493 * 109.47526 * 59.99350 * 22 20 18 24 24 H 1.48496 * 109.47534 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.46856 * 299.99762 * 22 20 18 26 26 C 1.40889 * 119.79304 * 359.72558 * 17 16 15 27 27 C 1.36323 * 119.89189 * 359.97438 * 26 17 16 28 28 H 1.09004 * 109.47203 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47752 * 300.00477 * 1 2 3 30 30 H 1.09008 * 109.47079 * 60.00317 * 1 2 3 31 31 H 1.09001 * 109.47450 * 239.99978 * 2 1 3 32 32 H 1.09008 * 109.47079 * 119.99683 * 2 1 3 33 33 H 1.09001 * 109.47356 * 30.11912 * 7 6 5 34 34 H 1.09006 * 109.46745 * 150.11216 * 7 6 5 35 35 H 1.09001 * 109.47437 * 180.02562 * 8 7 6 36 36 H 1.09001 * 109.47241 * 300.00673 * 8 7 6 37 37 H 1.09006 * 109.47131 * 60.00143 * 8 7 6 38 38 H 1.08996 * 109.47570 * 149.67173 * 10 9 6 39 39 H 1.09008 * 109.46759 * 29.68006 * 10 9 6 40 40 H 0.96998 * 119.99837 * 359.97438 * 11 10 9 41 41 H 1.07996 * 119.94843 * 359.97438 * 15 14 12 42 42 H 1.07994 * 120.05729 * 180.27717 * 16 15 14 43 43 H 0.97000 * 119.99535 * 180.02562 * 21 20 18 44 44 H 1.07996 * 120.04925 * 179.97438 * 26 17 16 45 45 H 1.07994 * 119.94393 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2918 2.1561 -1.0423 5 8 2.6804 3.2565 -0.7252 6 6 2.7252 3.3984 0.6068 7 6 3.1509 4.6264 1.3696 8 6 4.6574 4.5683 1.6301 9 6 2.3145 2.2194 1.1321 10 6 2.1824 1.8472 2.5864 11 7 3.4418 1.2661 3.0580 12 6 3.5580 0.8571 4.3371 13 8 2.6178 0.9709 5.0995 14 6 4.8252 0.2658 4.8107 15 6 5.9049 0.1314 3.9295 16 6 7.0788 -0.4087 4.3638 17 6 7.2007 -0.8426 5.6987 18 6 8.4117 -1.4082 6.1512 19 1 8.4104 -2.0840 6.9936 20 6 9.6167 -1.0928 5.5072 21 7 9.6901 -0.0391 4.7382 22 14 11.1170 -2.1792 5.7486 23 1 10.8113 -3.5559 5.2836 24 1 12.2547 -1.6330 4.9661 25 1 11.4778 -2.2119 7.1888 26 6 6.1095 -0.7106 6.5801 27 6 4.9416 -0.1636 6.1382 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 2.9173 5.5163 0.7851 34 1 2.6190 4.6662 2.3202 35 1 4.9652 5.4564 2.1822 36 1 4.8910 3.6784 2.2146 37 1 5.1893 4.5286 0.6795 38 1 1.3798 1.1191 2.7037 39 1 1.9525 2.7386 3.1701 40 1 4.1920 1.1756 2.4498 41 1 5.8090 0.4599 2.9052 42 1 7.9126 -0.5079 3.6846 43 1 10.5235 0.1788 4.2924 44 1 6.1982 -1.0422 7.6040 45 1 4.1045 -0.0624 6.8130 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270378142.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:17 Heat of formation + Delta-G solvation = 15.608767 kcal Electronic energy + Delta-G solvation = -27291.420348 eV Core-core repulsion = 23468.836902 eV Total energy + Delta-G solvation = -3822.583446 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -45.06245 -39.15501 -37.24622 -36.19264 -35.13914 -33.90319 -33.70314 -31.58521 -30.62668 -29.99942 -29.47173 -27.23133 -25.50008 -24.75767 -23.75334 -22.12778 -21.45042 -20.89262 -19.87916 -19.67706 -17.67392 -17.57639 -17.40125 -16.60035 -15.66289 -15.43776 -15.26085 -14.79783 -14.34679 -14.27413 -14.07538 -13.90451 -13.73187 -13.29384 -13.05735 -12.85479 -12.73497 -12.70086 -12.43527 -12.11916 -11.94533 -11.93672 -11.65962 -11.54731 -11.37839 -11.35049 -11.28981 -11.01779 -10.86906 -10.67209 -10.15824 -10.05568 -9.59363 -9.50182 -9.37258 -8.93248 -8.68049 -7.75564 -7.57776 -7.06798 -4.63585 1.29137 2.00260 2.19806 2.90190 2.92400 2.92993 2.96381 3.00574 3.71193 3.82543 3.88295 4.02596 4.24314 4.52217 4.66431 4.71098 4.89836 4.99752 5.05083 5.08249 5.20602 5.24017 5.47685 5.53499 5.60475 5.67605 5.68237 5.75978 5.85478 5.86291 5.89179 6.00193 6.03275 6.05222 6.13325 6.28626 6.73757 6.79502 6.83702 7.01270 7.10079 7.40066 7.61615 7.75496 7.82656 8.03850 8.15737 8.17771 8.36545 8.59851 8.71973 9.01261 9.85079 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014117 B = 0.002852 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.005201 B = 9815.478813 C =10234.287739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.050 4.050 3 C 0.039 3.961 4 N -0.367 5.367 5 O 0.096 5.904 6 C -0.007 4.007 7 C -0.044 4.044 8 C -0.152 4.152 9 C -0.215 4.215 10 C 0.205 3.795 11 N -0.738 5.738 12 C 0.573 3.427 13 O -0.575 6.575 14 C -0.285 4.285 15 C -0.062 4.062 16 C -0.178 4.178 17 C 0.129 3.871 18 C -0.442 4.442 19 H 0.085 0.915 20 C 0.075 3.925 21 N -0.771 5.771 22 Si 0.914 3.086 23 H -0.260 1.260 24 H -0.276 1.276 25 H -0.262 1.262 26 C -0.239 4.239 27 C -0.021 4.021 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.398 0.602 41 H 0.087 0.913 42 H 0.120 0.880 43 H 0.287 0.713 44 H 0.098 0.902 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.567 5.481 -9.091 13.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.088 4.088 3 C -0.120 4.120 4 N -0.073 5.073 5 O 0.033 5.967 6 C -0.071 4.071 7 C -0.082 4.082 8 C -0.210 4.210 9 C -0.220 4.220 10 C 0.081 3.919 11 N -0.392 5.392 12 C 0.368 3.632 13 O -0.457 6.457 14 C -0.289 4.289 15 C -0.081 4.081 16 C -0.197 4.197 17 C 0.126 3.874 18 C -0.470 4.470 19 H 0.103 0.897 20 C -0.147 4.147 21 N -0.394 5.394 22 Si 0.737 3.263 23 H -0.185 1.185 24 H -0.200 1.200 25 H -0.186 1.186 26 C -0.259 4.259 27 C -0.040 4.040 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.100 0.900 32 H 0.109 0.891 33 H 0.106 0.894 34 H 0.116 0.884 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.233 0.767 41 H 0.105 0.895 42 H 0.137 0.863 43 H 0.098 0.902 44 H 0.116 0.884 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -9.136 5.531 -10.035 14.655 hybrid contribution 1.114 -0.442 0.397 1.263 sum -8.022 5.089 -9.639 13.534 Atomic orbital electron populations 1.21711 0.93865 1.02413 1.02303 1.19989 0.96476 0.88118 1.04182 1.23456 1.01238 0.99089 0.88260 1.73842 1.16863 0.92734 1.23835 1.84814 1.62585 1.26871 1.22457 1.24417 1.00325 0.98684 0.83711 1.20193 0.98123 0.91344 0.98564 1.21802 0.93099 1.03555 1.02526 1.21025 1.09616 0.93886 0.97443 1.19210 0.88111 0.98800 0.85772 1.45978 1.14807 1.65764 1.12614 1.18591 0.88264 0.76131 0.80165 1.90640 1.41352 1.58433 1.55233 1.18855 0.93978 1.19539 0.96562 1.20454 0.93422 0.97979 0.96264 1.20970 0.96655 1.05758 0.96329 1.17779 0.91931 0.86756 0.90922 1.19832 0.90975 1.23073 1.13115 0.89720 1.26100 1.01275 0.94260 0.93052 1.69737 1.28644 1.19969 1.21032 0.86260 0.79202 0.80999 0.79824 1.18456 1.20034 1.18640 1.20717 0.95264 1.11173 0.98721 1.20353 0.96183 0.93908 0.93551 0.91525 0.92181 0.92591 0.90023 0.89137 0.89382 0.88377 0.91044 0.91461 0.92094 0.90727 0.90804 0.76718 0.89543 0.86255 0.90154 0.88388 0.88097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.89 37.15 0.37 -0.98 16 2 C -0.05 -0.53 6.44 -27.89 -0.18 -0.71 16 3 C 0.04 0.50 6.58 -82.10 -0.54 -0.04 16 4 N -0.37 -5.05 12.07 33.42 0.40 -4.65 16 5 O 0.10 1.23 11.20 17.19 0.19 1.42 16 6 C -0.01 -0.08 6.74 -35.30 -0.24 -0.32 16 7 C -0.04 -0.39 6.35 -27.88 -0.18 -0.56 16 8 C -0.15 -1.43 9.89 37.15 0.37 -1.07 16 9 C -0.22 -2.66 5.69 -104.42 -0.59 -3.26 16 10 C 0.21 2.78 6.00 -5.20 -0.03 2.75 16 11 N -0.74 -11.74 5.50 -62.49 -0.34 -12.09 16 12 C 0.57 11.59 7.76 -12.42 -0.10 11.50 16 13 O -0.57 -13.02 16.32 5.29 0.09 -12.93 16 14 C -0.28 -6.29 5.89 -104.73 -0.62 -6.91 16 15 C -0.06 -1.34 9.47 -39.61 -0.38 -1.71 16 16 C -0.18 -4.27 8.64 -39.27 -0.34 -4.61 16 17 C 0.13 3.23 5.58 -106.80 -0.60 2.64 16 18 C -0.44 -10.82 9.04 -37.75 -0.34 -11.17 16 19 H 0.08 1.97 7.91 -52.49 -0.42 1.56 16 20 C 0.07 1.71 5.14 -17.31 -0.09 1.62 16 21 N -0.77 -18.15 10.95 55.56 0.61 -17.54 16 22 Si 0.91 17.02 29.60 -169.99 -5.03 11.99 16 23 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 24 H -0.28 -5.00 7.11 56.52 0.40 -4.59 16 25 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 26 C -0.24 -5.67 9.73 -39.27 -0.38 -6.05 16 27 C -0.02 -0.48 9.52 -39.61 -0.38 -0.85 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.05 0.53 8.14 -51.92 -0.42 0.10 16 31 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.09 0.99 8.14 -51.92 -0.42 0.57 16 33 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.10 0.81 7.44 -51.93 -0.39 0.43 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.07 0.98 7.44 -51.92 -0.39 0.60 16 40 H 0.40 6.00 6.46 -40.82 -0.26 5.74 16 41 H 0.09 1.61 6.37 -52.49 -0.33 1.27 16 42 H 0.12 2.92 6.15 -52.49 -0.32 2.59 16 43 H 0.29 6.11 8.29 -40.82 -0.34 5.77 16 44 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 45 H 0.10 2.24 7.63 -52.49 -0.40 1.84 16 LS Contribution 382.50 15.07 5.76 5.76 Total: -1.00 -28.09 382.50 -8.85 -36.94 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -6.29 Total: 10.82 kcal Atomic # 6 Polarization: -15.49 SS G_CDS: -4.24 Total: -19.73 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: 0.67 Total: -34.27 kcal Atomic # 8 Polarization: -11.79 SS G_CDS: 0.28 Total: -11.51 kcal Atomic # 14 Polarization: 17.02 SS G_CDS: -5.03 Total: 11.99 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -28.09 -8.85 -36.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270378142.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.545 kcal (2) G-P(sol) polarization free energy of solvation -28.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds